Experiment set8IT049 for Phaeobacter inhibens DSM 17395

Compare to:

L-Histidine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
PGA1_c07110 +3.1 24.0 putative sodium/alanine symporter compare
PGA1_c27900 +2.1 9.1 ligand-binding UTRA domain-containing protein compare
PGA1_c07120 +2.0 8.9 putative universal stress protein compare
PGA1_c33870 +1.7 12.4 putative HTH-type transcriptional regulator GntR compare
PGA1_c07130 +1.7 10.2 putative leucine-responsive regulatory protein compare
PGA1_c06280 +1.6 4.0 cytochrome c oxidase assembly protein CtaG compare
PGA1_c01940 +1.5 7.0 crcB-like protein compare
PGA1_c03930 +1.4 6.1 Predicted permeases compare
PGA1_c36370 +1.4 9.9 HTH-type transcriptional regulator, GntR family conserved
PGA1_c03920 +1.4 4.9 Putative transmembrane protein (Alph_Pro_TM). compare
PGA1_c29840 +1.2 8.7 putative integral membrane protein compare
PGA1_c09900 +1.1 7.9 malate synthase GlcB compare
PGA1_c11390 +1.1 5.0 putative ATP-dependent RNA helicase RhlE compare
PGA1_65p00350 +1.0 7.3 hemolysin-like protein compare
PGA1_c27910 +1.0 6.1 N-acetylglucosamine kinase (EC 2.7.1.59) (from data) compare
PGA1_c18160 +1.0 3.5 trigger factor Tig compare
PGA1_c05490 +1.0 5.2 ureidoglycolate hydrolase AllA compare
PGA1_c16830 +1.0 5.0 xanthine phosphoribosyltransferase Gpt compare
PGA1_c23700 +1.0 3.3 protein HflC compare
PGA1_c26300 +0.9 3.8 ABC transporter, ATP-binding protein compare
PGA1_c05180 +0.9 2.3 Predicted small integral membrane protein compare
PGA1_c30470 +0.9 4.9 mandelate racemase / muconate lactonizing enzyme compare
PGA1_c30410 +0.9 1.2 HTH-type transcriptional regulator, AsnC family compare
PGA1_c14130 +0.8 4.2 transglycolase-like protein compare
PGA1_262p00420 +0.8 5.3 Transcriptional regulator/sugar kinase compare
PGA1_c32930 +0.8 2.0 ribosome-binding factor A compare
PGA1_c08890 +0.8 4.2 putative capsule polysaccharide export outer membrane protein compare
PGA1_c05200 +0.8 6.0 putative ABC transporter, inner membrane component compare
PGA1_c08990 +0.8 2.9 hypothetical protein compare
PGA1_c14490 +0.8 2.6 Uncharacterized conserved small protein compare
PGA1_c15100 +0.8 3.2 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ compare
PGA1_c05190 +0.8 5.3 ABC transporter, inner membrane component compare
PGA1_c24050 +0.8 2.1 hypothetical protein compare
PGA1_262p00960 +0.8 7.9 Prephenate dehydratase. compare
PGA1_78p00270 +0.8 2.3 lipoyl synthase LipA compare
PGA1_c14760 +0.8 1.5 bifunctional enzyme IspDF compare
PGA1_c11620 +0.7 2.9 Uncharacterized conserved protein compare
PGA1_c11190 +0.7 2.6 hypothetical protein compare
PGA1_c19100 +0.7 1.8 hypothetical protein compare
PGA1_c18580 +0.7 2.7 hypothetical protein compare
PGA1_c23710 +0.7 3.2 putative protein HflK compare
PGA1_c04900 +0.7 2.8 peptidyl-tRNA hydrolase Pth compare
PGA1_c18850 +0.7 3.4 Antibiotic biosynthesis monooxygenase. compare
PGA1_262p00390 +0.7 4.3 aldose 1-epimerase compare
PGA1_c08950 +0.7 1.7 hypothetical protein compare
PGA1_c02000 +0.7 5.0 glutamate/glutamine/aspartate/asparagine transport system permease protein BztC compare
PGA1_c05460 +0.7 5.1 transcriptional regulator, LysR family compare
PGA1_c03390 +0.7 4.8 acetoacetyl-CoA reductase PhaB compare
PGA1_78p00560 +0.7 2.2 Uncharacterized conserved protein compare
PGA1_c05220 +0.7 4.5 putative sn-glycerol-3-phosphate import ATP-binding protein UgpC compare
PGA1_c17350 +0.7 3.9 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) compare
PGA1_c15410 +0.6 1.5 hypothetical protein compare
PGA1_c10590 +0.6 1.6 putative ATP-dependent RNA helicase RhlE compare
PGA1_c27240 +0.6 1.9 hypothetical protein compare
PGA1_c01990 +0.6 4.6 glutamate/glutamine/aspartate/asparagine transport system permease protein BztB compare
PGA1_c31230 +0.6 1.1 hypothetical protein compare
PGA1_c04050 +0.6 3.7 phenylacetic acid degradation protein PaaD compare
PGA1_c16420 +0.6 1.4 putative phospholipase / carboxylesterase compare
PGA1_c13220 +0.6 4.1 putative transcriptional regulator, lacI family compare
PGA1_262p00490 +0.6 2.1 hypothetical protein compare
PGA1_c04110 +0.6 4.2 putative fatty acid oxidation complex subunit alpha compare
PGA1_78p00140 +0.6 1.5 Sugar phosphate isomerases/epimerases compare
PGA1_c23590 +0.6 2.6 hypothetical protein compare
PGA1_c08490 +0.6 1.6 Uncharacterized protein conserved in bacteria compare
PGA1_c07470 +0.6 4.6 putative oligoendopeptidase compare
PGA1_c17030 +0.6 1.3 peptidoglycan binding domain-containing protein compare
PGA1_c05210 +0.5 4.1 sn-glycerol-3-phosphate import ATP-binding protein UgbC compare
PGA1_c04950 +0.5 1.0 GTP-dependent nucleic acid-binding protein EngD compare
PGA1_c06630 +0.5 1.9 hypothetical protein compare
PGA1_c34120 +0.5 1.3 HTH-type transcriptional regulator PetP compare
PGA1_c05170 +0.5 2.8 penicillinase repressor blaI/mecI-like protein compare
PGA1_c24310 +0.5 3.0 putative capsular polysaccharide transport system, ATP-binding protein compare
PGA1_c16180 +0.5 2.1 TRAP transporter solute receptor, TAXI family compare
PGA1_c33200 +0.5 3.0 putative serine-protein kinase (anti-sigma-B factor) compare
PGA1_c07710 +0.5 1.4 putative sulfopyruvate decarboxylase subunit alpha compare
PGA1_c01160 +0.5 4.3 sensor protein ChvG compare
PGA1_65p00450 +0.5 1.9 UDP-glucose 6-dehydrogenase Ugd compare
PGA1_c24320 +0.5 3.8 putative capsule polysaccharide export inner-membrane protein compare
PGA1_c35510 +0.5 0.9 hypothetical protein compare
PGA1_c03400 +0.5 3.9 acetyl-CoA:acetyl-CoA C-acetyltransferase / acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase (EC 2.3.1.9; EC 2.3.1.16) (from data) compare
PGA1_c11610 +0.5 2.8 Uncharacterized protein conserved in bacteria compare
PGA1_c11440 +0.5 1.3 hypothetical protein compare
PGA1_c18340 +0.5 1.9 putative baseplate assembly protein W compare
PGA1_78p00030 +0.5 1.0 putative multicopper oxidase compare
PGA1_c15060 +0.5 2.4 carbohydrate kinase, PfkB family compare
PGA1_c02850 +0.5 0.4 peptidase S49-like protein compare
PGA1_c15310 +0.5 2.2 multidrug transporter EmrE compare
PGA1_c34150 +0.5 0.8 exodeoxyribonuclease VII, small subunit compare
PGA1_c11470 +0.5 1.8 acetyltransferase domain-containing protein compare
PGA1_c21870 +0.5 2.0 transcriptional regulator compare
PGA1_c18900 +0.5 0.9 Uncharacterized conserved protein compare
PGA1_c17870 +0.5 1.3 hypothetical protein compare
PGA1_c03640 +0.5 3.2 Predicted ATPase compare
PGA1_c07860 +0.5 3.8 alpha-glucosides-binding periplasmic protein AglE compare
PGA1_c12920 +0.5 1.5 nitrilotriacetate monooxygenase component B-like protein compare
PGA1_c34510 +0.5 3.6 hypothetical protein compare
PGA1_65p00110 +0.5 1.7 putative amino-acid ABC transporter, periplasmic solute-binding protein compare
PGA1_262p00950 +0.5 2.0 thioesterase superfamily protein TdaD compare
PGA1_c14720 +0.5 1.2 Oligoketide cyclase/lipid transport protein compare
PGA1_c10260 +0.5 3.0 putative pyridoxal-phosphate-dependent aminotransferase compare
PGA1_c06960 +0.5 1.4 Uncharacterized protein conserved in bacteria compare
PGA1_c31910 +0.5 2.8 YGGT family. compare
PGA1_c02010 +0.5 2.9 glutamate/glutamine/aspartate/asparagine transport ATP-binding protein BztD compare
PGA1_c07880 +0.4 3.5 alpha-glucoside transport system permease protein AglG compare
PGA1_c01060 +0.4 1.8 ribonuclease 3 compare
PGA1_c03810 +0.4 3.6 Uncharacterized conserved protein compare
PGA1_c12220 +0.4 1.8 monovalent cation/proton antiporter subunit G compare
PGA1_c34420 +0.4 3.5 putrescine-binding periplasmic protein PotF compare
PGA1_c11480 +0.4 1.8 Uncharacterized conserved protein compare
PGA1_c14140 +0.4 1.1 hypothetical protein compare
PGA1_c05450 +0.4 3.5 Predicted membrane protein compare
PGA1_c06240 +0.4 2.8 protein TldD compare
PGA1_c14530 +0.4 1.3 transcriptional regulator, TetR family compare
PGA1_c13450 +0.4 1.2 ribonuclease E compare
PGA1_c03820 +0.4 3.8 purine nucleoside phosphorylase deoD-type compare
PGA1_c34860 +0.4 3.1 33 kDa chaperonin (heat shock protein 33) compare
PGA1_c35660 +0.4 2.1 hypothetical protein compare
PGA1_c04080 +0.4 3.0 phenylacetic acid degradation protein PaaA compare
PGA1_c04040 +0.4 3.7 phenylacetic acid degradation NADH oxidoreductase PaaE compare
PGA1_c11460 +0.4 2.0 hypothetical protein compare
PGA1_c13490 +0.4 2.9 putative cytochrome P450 compare
PGA1_c10210 +0.4 1.9 hypothetical protein compare
PGA1_c33550 +0.4 2.8 putative fatty acid desaturase compare
PGA1_c20930 +0.4 3.6 poly(3-hydroxyalkanoate) polymerase PhaC compare
PGA1_c20590 +0.4 2.1 hypothetical protein compare
PGA1_c07870 +0.4 3.1 alpha-glucoside transport system permease protein AglF compare
PGA1_c30230 +0.4 3.4 2',3'-cyclic-nucleotide 2'-phosphodiesterase CpdB compare
PGA1_c05480 +0.4 3.1 OHCU decarboxylase domain-containing protein compare
PGA1_c16390 +0.4 1.5 ornithine cyclodeaminase ArcB compare
PGA1_c22830 +0.4 1.8 putative type IV secretion system protein VirB2 compare
PGA1_c14360 +0.4 2.5 cell cycle response regulator compare
PGA1_c28390 +0.4 2.3 hypothetical protein compare
PGA1_c35420 +0.4 2.6 adenosylhomocysteinase AhcY compare
PGA1_c35260 +0.4 1.4 ATP-dependent protease HslV compare
PGA1_c22240 +0.4 1.2 hypothetical protein compare
PGA1_c07900 +0.4 2.9 alpha-glucoside transport ATP-binding protein AglK compare
PGA1_c12330 +0.4 2.6 hypothetical protein compare
PGA1_c24830 +0.4 1.2 Protein of unknown function (DUF1150). compare
PGA1_c19910 +0.4 0.9 Protein of unknown function (DUF1499). compare
PGA1_c08590 +0.4 2.8 heme NO binding domain-containing protein compare
PGA1_65p00060 +0.4 1.7 putative regulatory protein, LuxR family compare
PGA1_78p00250 +0.4 1.0 putative HTH-type transcriptional regulator compare
PGA1_c03830 +0.4 3.3 putative regulatory protein, H-NS histone family compare
PGA1_c06390 +0.4 2.5 putative sulfate transporter compare
PGA1_c35930 +0.4 2.3 hypothetical protein compare
PGA1_262p01040 +0.4 1.9 periplasmic dipeptide transport protein precursor (dipeptide-binding protein) (DBP) compare
PGA1_c17680 +0.4 0.4 hypothetical protein compare
PGA1_c29120 +0.4 0.6 hypothetical protein compare
PGA1_c30360 +0.4 2.6 protein RpsU compare
PGA1_c12070 +0.4 1.5 hypothetical protein compare
PGA1_c15930 +0.4 1.7 hypothetical protein compare
PGA1_c35740 +0.4 1.8 hypothetical protein compare
PGA1_c16360 +0.4 1.1 putative transriptional regulator, AsnC family compare
PGA1_c05980 +0.4 1.3 Uncharacterized protein conserved in bacteria compare
PGA1_c02530 +0.4 2.3 HTH-type transcriptional regulator compare
PGA1_c35290 +0.4 2.2 Conserved hypothetical protein (Lin0512_fam). compare
PGA1_c11960 +0.4 1.4 uracil phosphoribosyltransferase Upp compare
PGA1_c01670 +0.4 1.4 hypothetical protein compare
PGA1_c16170 +0.4 2.4 TRAP transporter, 4TM/12TM fusion protein compare
PGA1_c29020 +0.4 1.5 hypothetical protein compare
PGA1_c27450 +0.4 1.8 Demethylmenaquinone methyltransferase compare
PGA1_c15240 +0.4 2.8 two-component system histidine kinase / response regulator compare
PGA1_c16820 +0.4 1.4 putative threonine efflux protein compare
PGA1_262p01050 +0.4 2.3 Hemolysin-type calcium-binding repeat (2 copies). compare
PGA1_c08900 +0.3 2.2 putative capsule polysaccharide export protein KpsS compare
PGA1_c28600 +0.3 1.1 tRNA-Met compare
PGA1_c22110 +0.3 2.2 putative glutathione-binding protein GsiB compare
PGA1_c13530 +0.3 2.0 hypothetical protein compare
PGA1_c03180 +0.3 1.5 hypothetical protein compare
PGA1_c08410 +0.3 2.0 hypothetical protein compare
PGA1_c17420 +0.3 1.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA compare
PGA1_78p00340 +0.3 0.9 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
PGA1_c14920 +0.3 2.3 transcription-repair-coupling factor Mfd compare
PGA1_c13480 +0.3 1.8 hypothetical protein compare
PGA1_c29850 +0.3 0.5 tRNA-Pro compare
PGA1_c16160 +0.3 1.8 universal stress protein F compare
PGA1_c00800 +0.3 1.7 hypothetical protein compare
PGA1_c12080 +0.3 2.7 putative acyl-CoA dehydrogenase compare
PGA1_c09750 +0.3 1.8 Uncharacterized protein conserved in bacteria compare
PGA1_c04060 +0.3 2.2 phenylacetic acid degradation protein PaaC compare
PGA1_c10060 +0.3 1.1 putative transcriptional regulator, MerR family compare
PGA1_c02130 +0.3 0.9 conserved hypothetical protein YidD compare
PGA1_c14350 +0.3 2.6 Protein of unknown function (DUF1153). compare
PGA1_c26590 +0.3 2.4 peptidyl-dipeptidase Dcp compare
PGA1_c04800 +0.3 2.1 tRNA (guanine-N(7)-)-methyltransferase TrmB compare
PGA1_c10310 +0.3 1.8 hypothetical protein compare
PGA1_c13110 +0.3 1.4 putative nitrilotriacetate monooxygenase component B compare
PGA1_c03840 +0.3 2.8 methylmalonyl-CoA mutase large subunit compare
PGA1_c05510 +0.3 2.2 glyceraldehyde-3-phosphate dehydrogenase 1 compare
PGA1_c02100 +0.3 2.3 diguanylate cyclase (GGDEF) domain-containing protein compare
PGA1_c19650 +0.3 1.6 Protein of unknown function (DUF2474). compare
PGA1_c15920 +0.3 1.9 putative branched-chain amino acid transport ATP-binding protein compare
PGA1_c32940 +0.3 2.1 Predicted periplasmic protein compare
PGA1_c05660 +0.3 1.8 Predicted ATPase compare
PGA1_c08880 +0.3 2.3 capsule polysaccharide export protein KpsC compare
PGA1_c13610 +0.3 0.6 ABC-type transport system, involved in lipoprotein release, permease component compare
PGA1_78p00400 +0.3 0.9 tonB dependent receptor compare
PGA1_c24180 +0.3 1.7 LAO/AO transport system kinase ArgK compare
PGA1_c20600 +0.3 1.5 Protein of unknown function (DUF1826). compare
PGA1_c34380 +0.3 2.3 putative spermidine/putrescine transport system extracellular solute-binding protein compare


Specific Phenotypes

For 19 genes in this experiment

For nitrogen source L-Histidine in Phaeobacter inhibens DSM 17395

For nitrogen source L-Histidine across organisms