Experiment set8IT048 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x

200 most important genes:

  gene name fitness t score description  
BWI76_RS00805 -9.6 -6.6 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS20355 -9.3 -6.4 colicin V production protein compare
BWI76_RS04675 -9.1 -6.3 3-isopropylmalate dehydrogenase compare
BWI76_RS11965 -9.0 -6.2 orotidine-5'-phosphate decarboxylase compare
BWI76_RS21265 -8.5 -13.0 phosphoribosylformylglycinamidine synthase compare
BWI76_RS18925 -8.4 -5.8 histidinol dehydrogenase compare
BWI76_RS23920 -8.3 -5.7 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS04160 -8.2 -8.0 phosphoserine phosphatase compare
BWI76_RS21475 -8.0 -7.8 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS00980 -8.0 -9.5 PLP-dependent threonine dehydratase compare
BWI76_RS04465 -7.9 -5.5 carbamoyl-phosphate synthase small subunit compare
BWI76_RS27385 -7.9 -5.5 orotate phosphoribosyltransferase compare
BWI76_RS25115 -7.8 -9.3 argininosuccinate synthase compare
BWI76_RS00850 -7.8 -10.9 acetylglutamate kinase compare
BWI76_RS04470 -7.5 -9.0 carbamoyl phosphate synthase large subunit compare
BWI76_RS05835 -7.5 -5.2 gamma-glutamyl-phosphate reductase compare
BWI76_RS01615 -7.4 -10.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS11855 -7.4 -8.0 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS04685 -7.2 -11.0 putative leucine operon leader peptide compare
BWI76_RS18955 -7.2 -6.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS07065 -7.1 -8.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS04250 -7.1 -7.8 homoserine kinase compare
BWI76_RS18935 -7.0 -8.1 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS18950 -7.0 -5.5 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS02995 -6.9 -9.5 aspartate carbamoyltransferase compare
BWI76_RS00785 -6.9 -6.7 cystathionine gamma-synthase compare
BWI76_RS20350 -6.7 -6.2 amidophosphoribosyltransferase compare
BWI76_RS01655 -6.7 -10.7 homoserine O-succinyltransferase compare
BWI76_RS04255 -6.7 -11.1 threonine synthase compare
BWI76_RS04670 -6.6 -8.6 3-isopropylmalate dehydratase large subunit compare
BWI76_RS09645 -6.6 -2.8 thioredoxin-disulfide reductase compare
BWI76_RS26085 -6.5 -4.5 3-dehydroquinate synthase compare
BWI76_RS20895 -6.5 -5.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS07070 -6.5 -6.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS18940 -6.5 -7.7 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS10990 -6.5 -3.9 dihydroorotase compare
BWI76_RS05840 -6.5 -7.7 glutamate 5-kinase compare
BWI76_RS04665 -6.5 -17.7 3-isopropylmalate dehydratase small subunit compare
BWI76_RS11860 -6.5 -8.4 anthranilate synthase component I compare
BWI76_RS00985 -6.4 -9.4 transcriptional regulator IlvY compare
BWI76_RS22690 -6.4 -4.4 adenylyl-sulfate kinase compare
BWI76_RS09755 -6.2 -9.5 phosphoserine transaminase compare
BWI76_RS00990 -6.2 -10.4 ketol-acid reductoisomerase compare
BWI76_RS11850 -6.2 -7.8 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS04245 -6.1 -15.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS00845 -6.1 -9.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS00835 -6.0 -15.2 phosphoenolpyruvate carboxylase compare
BWI76_RS09910 -6.0 -17.7 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS11840 -6.0 -3.0 tryptophan synthase subunit alpha compare
BWI76_RS04680 -6.0 -14.1 2-isopropylmalate synthase compare
BWI76_RS00855 -5.9 -8.1 argininosuccinate lyase compare
BWI76_RS25645 -5.9 -8.2 shikimate dehydrogenase compare
BWI76_RS22760 -5.8 -11.0 sulfite reductase subunit beta compare
BWI76_RS03010 -5.8 -8.9 ornithine carbamoyltransferase compare
BWI76_RS22755 -5.8 -9.6 phosphoadenosine phosphosulfate reductase compare
BWI76_RS18920 -5.8 -4.3 ATP phosphoribosyltransferase compare
BWI76_RS18930 -5.7 -5.6 histidinol-phosphate transaminase compare
BWI76_RS04645 -5.7 -5.2 3-dehydroquinase compare
BWI76_RS00965 -5.7 -2.4 acetolactate synthase 2 small subunit compare
BWI76_RS24285 -5.7 -8.1 cystathionine beta-lyase compare
BWI76_RS23220 -5.6 -7.9 amino-acid N-acetyltransferase compare
BWI76_RS20965 -5.6 -4.2 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS22765 -5.4 -15.5 sulfite reductase subunit alpha compare
BWI76_RS23365 -5.2 -5.5 LysR family transcriptional regulator compare
BWI76_RS27390 -5.2 -4.3 ribonuclease PH compare
BWI76_RS08385 -5.2 -6.0 citrate (Si)-synthase compare
BWI76_RS11845 -5.2 -2.1 tryptophan synthase subunit beta compare
BWI76_RS09760 -5.1 -4.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS00975 -5.1 -7.3 dihydroxy-acid dehydratase compare
BWI76_RS01610 -4.9 -4.6 phosphoribosylamine--glycine ligase compare
BWI76_RS23360 -4.9 -5.8 diaminopimelate decarboxylase compare
BWI76_RS00400 -4.8 -3.3 glutamine synthetase compare
BWI76_RS01200 -4.6 -4.3 diaminopimelate epimerase compare
BWI76_RS01800 -4.5 -4.9 glucose-6-phosphate isomerase compare
BWI76_RS04240 -4.5 -3.2 thr operon leader peptide compare
BWI76_RS23240 -4.1 -2.9 exonuclease V subunit gamma compare
BWI76_RS02735 -4.1 -5.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS26570 -4.1 -5.4 anion permease compare
BWI76_RS05015 -4.0 -4.1 transcriptional regulator compare
BWI76_RS20435 -4.0 -2.4 chorismate synthase compare
BWI76_RS13920 -4.0 -5.8 magnesium-translocating P-type ATPase compare
BWI76_RS26055 -3.8 -9.5 siroheme synthase compare
BWI76_RS20650 -3.7 -2.6 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS26000 -3.6 -11.7 aspartate aminotransferase family protein compare
BWI76_RS15115 -3.4 -6.2 MFS transporter compare
BWI76_RS21465 -3.3 -3.5 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS09660 -3.3 -2.2 DNA translocase FtsK compare
BWI76_RS04510 -3.0 -3.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS00960 -2.9 -4.8 acetolactate synthase 2 catalytic subunit compare
BWI76_RS17110 -2.8 -2.6 vitamin B12 ABC transporter permease BtuC compare
BWI76_RS09655 -2.8 -4.0 leucine-responsive regulatory protein compare
BWI76_RS27430 -2.7 -2.2 (p)ppGpp synthetase compare
BWI76_RS01210 -2.7 -2.8 tyrosine recombinase XerC compare
BWI76_RS06530 -2.4 -5.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS23265 -2.3 -3.3 hypothetical protein compare
BWI76_RS01350 -2.3 -1.9 NAD(P)H-flavin reductase compare
BWI76_RS25320 -2.3 -8.3 glutamate synthase compare
BWI76_RS25065 -2.2 -3.2 polyribonucleotide nucleotidyltransferase compare
BWI76_RS20640 -2.2 -6.3 cysteine synthase A compare
BWI76_RS17975 -2.1 -5.2 tail-specific protease compare
BWI76_RS00180 -2.1 -1.8 F0F1 ATP synthase subunit epsilon compare
BWI76_RS23480 -2.1 -9.9 EAL domain-containing protein compare
BWI76_RS23230 -2.1 -3.6 exodeoxyribonuclease V subunit beta compare
BWI76_RS15225 -2.1 -1.8 DeoR family transcriptional regulator compare
BWI76_RS00390 -2.0 -4.5 two-component system sensor histidine kinase NtrB compare
BWI76_RS06525 -2.0 -6.3 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS04100 -2.0 -4.8 peptide chain release factor 3 compare
BWI76_RS19840 -2.0 -1.7 hypothetical protein compare
BWI76_RS02530 -1.9 -3.0 tRNA dimethylallyltransferase compare
BWI76_RS13915 -1.8 -3.8 magnesium transport protein MgtC compare
BWI76_RS05200 -1.8 -2.6 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS25315 -1.8 -11.2 glutamate synthase large subunit compare
BWI76_RS20720 -1.8 -2.0 hypothetical protein compare
BWI76_RS01275 -1.7 -6.5 LysR family transcriptional regulator compare
BWI76_RS20970 -1.7 -2.0 phosphoribosylglycinamide formyltransferase compare
BWI76_RS02580 -1.7 -2.6 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS10035 -1.7 -2.4 hypothetical protein compare
BWI76_RS16000 -1.7 -1.7 multidrug transporter subunit MdtI compare
BWI76_RS22935 -1.6 -2.1 L-fucose mutarotase compare
BWI76_RS02410 -1.6 -2.5 EF-P beta-lysylation protein EpmB compare
BWI76_RS00385 -1.5 -8.7 nitrogen assimilation regulatory protein compare
BWI76_RS22695 -1.5 -4.0 sulfate adenylyltransferase compare
BWI76_RS20440 -1.5 -1.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS24025 -1.5 -6.8 agmatinase compare
BWI76_RS05165 -1.4 -6.9 cobalamin-binding protein compare
BWI76_RS23915 -1.4 -2.9 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS15850 -1.4 -0.9 DUF1317 domain-containing protein compare
BWI76_RS22805 -1.4 -6.8 GTP diphosphokinase compare
BWI76_RS16895 -1.4 -1.8 3-(3-hydroxy-phenyl)propionate transporter MhpT compare
BWI76_RS00345 -1.4 -2.8 protein disulfide oxidoreductase DsbA compare
BWI76_RS11130 -1.3 -4.2 PTS glucose transporter subunit IIBC compare
BWI76_RS21480 -1.3 -2.4 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS22700 -1.3 -3.6 sulfate adenylyltransferase subunit 2 compare
BWI76_RS15110 -1.3 -6.7 putative excinuclease ABC subunit A compare
BWI76_RS15840 -1.3 -2.1 prophage protein compare
BWI76_RS21370 -1.3 -1.4 ATP-dependent RNA helicase SrmB compare
BWI76_RS19690 -1.3 -3.2 LysR family transcriptional regulator compare
BWI76_RS09970 -1.3 -2.2 porin OmpA compare
BWI76_RS09870 -1.3 -6.6 aromatic amino acid aminotransferase compare
BWI76_RS13595 -1.2 -2.7 transcriptional regulator compare
BWI76_RS01685 -1.2 -8.1 methionine synthase compare
BWI76_RS22705 -1.2 -5.6 siroheme synthase compare
BWI76_RS11635 -1.2 -1.5 ABC transporter compare
BWI76_RS27440 -1.2 -3.8 DNA helicase RecG compare
BWI76_RS06765 -1.2 -2.2 transcriptional regulator compare
BWI76_RS07725 -1.1 -1.3 iron-enterobactin transporter permease compare
BWI76_RS25425 -1.1 -1.1 arginine repressor compare
BWI76_RS25070 -1.1 -1.8 hypothetical protein compare
BWI76_RS21165 -1.1 -1.8 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS20490 -1.1 -2.0 hypothetical protein compare
BWI76_RS05450 -1.1 -1.3 ribonuclease HI compare
BWI76_RS13435 -1.1 -1.6 hypothetical protein compare
BWI76_RS21580 -1.1 -1.6 SsrA-binding protein compare
BWI76_RS09190 -1.1 -2.6 hypothetical protein compare
BWI76_RS00380 -1.1 -5.7 oxygen-independent coproporphyrinogen III oxidase compare
BWI76_RS00970 -1.1 -2.1 branched chain amino acid aminotransferase compare
BWI76_RS09650 -1.1 -4.1 hypothetical protein compare
BWI76_RS17095 -1.1 -5.0 vitamin B12 ABC transporter ATP-binding protein BtuD compare
BWI76_RS05120 -1.0 -5.8 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS02985 -1.0 -3.4 reactive intermediate/imine deaminase compare
BWI76_RS09530 -1.0 -1.1 hypothetical protein compare
BWI76_RS12470 -1.0 -1.5 thiosulfate sulfurtransferase PspE compare
BWI76_RS11040 -1.0 -2.5 ribonuclease E compare
BWI76_RS07640 -1.0 -1.6 short chain dehydrogenase compare
BWI76_RS11335 -1.0 -1.2 tautomerase compare
BWI76_RS11515 -1.0 -1.4 peptide-methionine (R)-S-oxide reductase compare
BWI76_RS21310 -1.0 -1.0 DNA repair protein RecO compare
BWI76_RS06185 -0.9 -4.5 shikimate kinase II compare
BWI76_RS16635 -0.9 -3.9 carbonate dehydratase compare
BWI76_RS24465 -0.9 -5.7 adenylate cyclase compare
BWI76_RS19025 -0.9 -5.4 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
BWI76_RS15680 -0.9 -2.5 hypothetical protein compare
BWI76_RS06535 -0.9 -2.7 endopeptidase La compare
BWI76_RS08825 -0.9 -2.1 cyclic pyranopterin monophosphate synthase MoaC compare
BWI76_RS11700 -0.9 -1.2 hypothetical protein compare
BWI76_RS26175 -0.9 -2.9 DeoR/GlpR family transcriptional regulator compare
BWI76_RS20995 -0.9 -3.1 RNA degradosome polyphosphate kinase compare
BWI76_RS10700 -0.9 -1.7 XRE family transcriptional regulator compare
BWI76_RS25960 -0.9 -3.6 NUDIX hydrolase compare
BWI76_RS06770 -0.9 -5.3 Hha toxicity attenuator compare
BWI76_RS16485 -0.9 -1.1 ribonuclease T compare
BWI76_RS16920 -0.9 -1.5 3-(2,3-dihydroxyphenyl)propionate dioxygenase compare
BWI76_RS16355 -0.8 -2.2 electron transport complex subunit A compare
BWI76_RS21000 -0.8 -4.5 exopolyphosphatase compare
BWI76_RS20900 -0.8 -1.4 outer membrane protein assembly factor BamC compare
BWI76_RS13775 -0.8 -1.5 putative FMN-dependent luciferase-like monooxygenase compare
BWI76_RS17050 -0.8 -4.8 FAD-binding oxidoreductase compare
BWI76_RS17805 -0.8 -1.0 membrane protein compare
BWI76_RS12090 -0.8 -2.1 HNH endonuclease compare
BWI76_RS15050 -0.8 -2.4 sugar transporter compare
BWI76_RS19845 -0.8 -2.3 phosphatase compare
BWI76_RS15830 -0.8 -1.4 hypothetical protein compare
BWI76_RS09610 -0.7 -2.7 ATP-dependent Clp protease adaptor ClpS compare
BWI76_RS11430 -0.7 -0.9 lipoprotein compare
BWI76_RS14505 -0.7 -1.8 salicylate synthase Irp9 compare
BWI76_RS14925 -0.7 -1.9 ABC transporter substrate-binding protein compare
BWI76_RS13820 -0.7 -1.1 hypothetical protein compare
BWI76_RS18885 -0.7 -0.8 nitrogen fixation regulatory protein compare
BWI76_RS26620 -0.7 -1.0 Fe-S biogenesis protein NfuA compare
BWI76_RS21140 -0.7 -1.2 molecular chaperone HscA compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms