Experiment set8IT047 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x

200 most important genes:

  gene name fitness t score description  
BWI76_RS09645 -6.9 -2.5 thioredoxin-disulfide reductase compare
BWI76_RS26085 -6.3 -3.9 3-dehydroquinate synthase compare
BWI76_RS09760 -4.6 -5.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS15115 -4.5 -6.2 MFS transporter compare
BWI76_RS00400 -4.4 -2.7 glutamine synthetase compare
BWI76_RS01210 -4.3 -3.1 tyrosine recombinase XerC compare
BWI76_RS00180 -4.1 -2.1 F0F1 ATP synthase subunit epsilon compare
BWI76_RS11840 -3.6 -6.4 tryptophan synthase subunit alpha compare
BWI76_RS25960 -3.5 -4.1 NUDIX hydrolase compare
BWI76_RS15225 -3.3 -6.8 DeoR family transcriptional regulator compare
BWI76_RS21475 -3.3 -5.5 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS01350 -3.3 -1.7 NAD(P)H-flavin reductase compare
BWI76_RS02815 -3.2 -3.1 fructose-bisphosphatase class I compare
BWI76_RS00965 -3.2 -1.6 acetolactate synthase 2 small subunit compare
BWI76_RS04465 -3.2 -3.5 carbamoyl-phosphate synthase small subunit compare
BWI76_RS24285 -3.2 -6.0 cystathionine beta-lyase compare
BWI76_RS10990 -3.1 -3.6 dihydroorotase compare
BWI76_RS18950 -3.1 -4.3 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS20150 -3.0 -2.0 NADH:ubiquinone oxidoreductase subunit J compare
BWI76_RS09755 -2.9 -10.2 phosphoserine transaminase compare
BWI76_RS04705 -2.9 -6.7 DNA-binding transcriptional regulator FruR compare
BWI76_RS18940 -2.8 -3.7 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS04525 -2.8 -2.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS04250 -2.8 -7.6 homoserine kinase compare
BWI76_RS04255 -2.8 -7.0 threonine synthase compare
BWI76_RS18935 -2.7 -6.2 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS04680 -2.7 -10.6 2-isopropylmalate synthase compare
BWI76_RS04670 -2.7 -7.6 3-isopropylmalate dehydratase large subunit compare
BWI76_RS20965 -2.7 -3.8 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS16235 -2.7 -6.0 membrane protein compare
BWI76_RS20895 -2.7 -4.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS01615 -2.7 -7.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS01200 -2.7 -2.6 diaminopimelate epimerase compare
BWI76_RS11965 -2.7 -6.2 orotidine-5'-phosphate decarboxylase compare
BWI76_RS13920 -2.6 -7.2 magnesium-translocating P-type ATPase compare
BWI76_RS23240 -2.6 -3.5 exonuclease V subunit gamma compare
BWI76_RS01185 -2.6 -3.1 adenylate cyclase compare
BWI76_RS18920 -2.5 -2.2 ATP phosphoribosyltransferase compare
BWI76_RS08385 -2.5 -4.0 citrate (Si)-synthase compare
BWI76_RS04685 -2.5 -6.6 putative leucine operon leader peptide compare
BWI76_RS19605 -2.5 -5.0 CidB/LrgB family autolysis modulator compare
BWI76_RS00855 -2.5 -5.6 argininosuccinate lyase compare
BWI76_RS00980 -2.5 -7.6 PLP-dependent threonine dehydratase compare
BWI76_RS20355 -2.4 -4.4 colicin V production protein compare
BWI76_RS04470 -2.4 -8.3 carbamoyl phosphate synthase large subunit compare
BWI76_RS07070 -2.4 -5.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS00990 -2.4 -7.5 ketol-acid reductoisomerase compare
BWI76_RS21265 -2.4 -10.8 phosphoribosylformylglycinamidine synthase compare
BWI76_RS02995 -2.4 -6.7 aspartate carbamoyltransferase compare
BWI76_RS04160 -2.4 -5.4 phosphoserine phosphatase compare
BWI76_RS04665 -2.4 -13.7 3-isopropylmalate dehydratase small subunit compare
BWI76_RS23230 -2.4 -3.6 exodeoxyribonuclease V subunit beta compare
BWI76_RS18930 -2.4 -4.5 histidinol-phosphate transaminase compare
BWI76_RS01655 -2.4 -9.0 homoserine O-succinyltransferase compare
BWI76_RS04510 -2.4 -1.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS20350 -2.4 -4.8 amidophosphoribosyltransferase compare
BWI76_RS01610 -2.3 -6.3 phosphoribosylamine--glycine ligase compare
BWI76_RS01660 -2.3 -5.4 malate synthase A compare
BWI76_RS01665 -2.3 -7.2 Isocitrate lyase (EC 4.1.3.1) (from data) compare
BWI76_RS03010 -2.3 -6.2 ornithine carbamoyltransferase compare
BWI76_RS23365 -2.3 -6.2 LysR family transcriptional regulator compare
BWI76_RS00805 -2.2 -3.2 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS02095 -2.2 -10.1 acetyl-coenzyme A synthetase compare
BWI76_RS20650 -2.2 -3.0 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS04645 -2.2 -4.4 3-dehydroquinase compare
BWI76_RS21990 -2.2 -7.2 ATPase AAA compare
BWI76_RS08395 -2.2 -2.6 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS26075 -2.1 -4.0 DNA adenine methylase compare
BWI76_RS00845 -2.1 -7.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS00975 -2.1 -7.7 dihydroxy-acid dehydratase compare
BWI76_RS04675 -2.1 -5.7 3-isopropylmalate dehydrogenase compare
BWI76_RS25115 -2.1 -6.8 argininosuccinate synthase compare
BWI76_RS18925 -2.1 -5.6 histidinol dehydrogenase compare
BWI76_RS00785 -2.0 -4.1 cystathionine gamma-synthase compare
BWI76_RS20435 -2.0 -1.3 chorismate synthase compare
BWI76_RS11850 -2.0 -7.7 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS16090 -2.0 -2.0 two-component system response regulator DcuR compare
BWI76_RS21465 -2.0 -4.1 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS05840 -2.0 -3.1 glutamate 5-kinase compare
BWI76_RS23220 -2.0 -6.1 amino-acid N-acetyltransferase compare
BWI76_RS05015 -2.0 -1.6 transcriptional regulator compare
BWI76_RS20180 -2.0 -4.4 NADH-quinone oxidoreductase subunit C/D compare
BWI76_RS07065 -2.0 -6.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS20190 -2.0 -4.3 NADH-quinone oxidoreductase subunit A compare
BWI76_RS23360 -1.9 -2.4 diaminopimelate decarboxylase compare
BWI76_RS20155 -1.9 -2.0 NADH-quinone oxidoreductase subunit I compare
BWI76_RS08405 -1.9 -3.2 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS25420 -1.9 -3.5 malate dehydrogenase compare
BWI76_RS19600 -1.9 -8.1 hypothetical protein compare
BWI76_RS21985 -1.9 -8.1 acetaldehyde dehydrogenase (EC 1.2.1.3) (from data) compare
BWI76_RS23920 -1.9 -3.6 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS13800 -1.9 -5.6 zinc-dependent alcohol dehydrogenase compare
BWI76_RS00380 -1.9 -6.5 oxygen-independent coproporphyrinogen III oxidase compare
BWI76_RS09660 -1.9 -2.0 DNA translocase FtsK compare
BWI76_RS20140 -1.9 -7.0 NADH-quinone oxidoreductase subunit L compare
BWI76_RS17980 -1.9 -3.4 RNA chaperone ProQ compare
BWI76_RS04245 -1.9 -8.6 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS15835 -1.9 -1.5 hypothetical protein compare
BWI76_RS01670 -1.9 -7.1 bifunctional isocitrate dehydrogenase kinase/phosphatase compare
BWI76_RS11845 -1.8 -3.9 tryptophan synthase subunit beta compare
BWI76_RS05680 -1.8 -2.9 LacI family transcriptional regulator compare
BWI76_RS26065 -1.8 -2.4 phosphoglycolate phosphatase compare
BWI76_RS27385 -1.8 -4.1 orotate phosphoribosyltransferase compare
BWI76_RS01540 -1.8 -2.0 thiamine biosynthesis protein ThiS compare
BWI76_RS25335 -1.8 -3.5 stringent starvation protein A compare
BWI76_RS22690 -1.8 -2.4 adenylyl-sulfate kinase compare
BWI76_RS20165 -1.8 -3.2 NADH-quinone oxidoreductase subunit G compare
BWI76_RS20145 -1.8 -1.9 NADH-quinone oxidoreductase subunit K compare
BWI76_RS06485 -1.8 -3.1 cytochrome o ubiquinol oxidase subunit III compare
BWI76_RS11860 -1.7 -5.7 anthranilate synthase component I compare
BWI76_RS09635 -1.7 -2.2 amino acid ABC transporter ATP-binding protein compare
BWI76_RS09910 -1.7 -10.6 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS24075 -1.7 -4.8 glutathione synthase compare
BWI76_RS05835 -1.7 -2.4 gamma-glutamyl-phosphate reductase compare
BWI76_RS20135 -1.7 -5.5 NADH-quinone oxidoreductase subunit M compare
BWI76_RS12420 -1.7 -1.5 peptide ABC transporter substrate-binding protein SapA compare
BWI76_RS27820 -1.7 -1.3 ilvB operon leader peptide IvbL compare
BWI76_RS00025 -1.7 -1.0 hypothetical protein compare
BWI76_RS20130 -1.6 -5.8 NADH-quinone oxidoreductase subunit N compare
BWI76_RS14415 -1.6 -2.4 transcriptional regulator, TetR family protein compare
BWI76_RS20160 -1.6 -2.4 NADH-quinone oxidoreductase subunit H compare
BWI76_RS06540 -1.6 -2.4 DNA-binding protein HU-beta compare
BWI76_RS18955 -1.6 -4.2 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS00985 -1.6 -2.8 transcriptional regulator IlvY compare
BWI76_RS02410 -1.5 -1.7 EF-P beta-lysylation protein EpmB compare
BWI76_RS27815 -1.5 -7.2 acetolactate synthase catalytic subunit compare
BWI76_RS15840 -1.5 -2.5 prophage protein compare
BWI76_RS00850 -1.5 -5.4 acetylglutamate kinase compare
BWI76_RS07185 -1.5 -2.3 hypothetical protein compare
BWI76_RS07675 -1.5 -4.0 DeoR family transcriptional regulator compare
BWI76_RS00600 -1.4 -5.0 LacI family transcriptional regulator compare
BWI76_RS09655 -1.4 -5.7 leucine-responsive regulatory protein compare
BWI76_RS25070 -1.4 -1.6 hypothetical protein compare
BWI76_RS15850 -1.4 -0.8 DUF1317 domain-containing protein compare
BWI76_RS11855 -1.4 -3.2 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS04240 -1.4 -1.9 thr operon leader peptide compare
BWI76_RS02735 -1.4 -3.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS15215 -1.4 -1.4 N-acetyltransferase compare
BWI76_RS13595 -1.4 -3.5 transcriptional regulator compare
BWI76_RS27390 -1.4 -3.1 ribonuclease PH compare
BWI76_RS16485 -1.4 -2.1 ribonuclease T compare
BWI76_RS24740 -1.4 -4.2 GntR family transcriptional regulator compare
BWI76_RS11255 -1.4 -1.3 putrescine/spermidine ABC transporter ATP-binding protein compare
BWI76_RS18110 -1.4 -4.6 transcriptional regulator HexR compare
BWI76_RS09640 -1.4 -2.5 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS17720 -1.3 -1.0 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS06185 -1.3 -7.2 shikimate kinase II compare
BWI76_RS17975 -1.3 -3.1 tail-specific protease compare
BWI76_RS27810 -1.3 -6.8 acetolactate synthase isozyme 1 small subunit compare
BWI76_RS03105 -1.3 -1.1 myo-inosose-2 dehydratase compare
BWI76_RS19375 -1.3 -2.2 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS13915 -1.3 -3.5 magnesium transport protein MgtC compare
BWI76_RS27425 -1.2 -1.3 DNA-directed RNA polymerase subunit omega compare
BWI76_RS21310 -1.2 -1.0 DNA repair protein RecO compare
BWI76_RS23265 -1.2 -2.3 hypothetical protein compare
BWI76_RS06765 -1.2 -2.2 transcriptional regulator compare
BWI76_RS19935 -1.2 -1.6 hypothetical protein compare
BWI76_RS15830 -1.2 -1.8 hypothetical protein compare
BWI76_RS27395 -1.2 -3.3 hypothetical protein compare
BWI76_RS15810 -1.2 -3.3 hypothetical protein compare
BWI76_RS22755 -1.1 -3.6 phosphoadenosine phosphosulfate reductase compare
BWI76_RS09650 -1.1 -4.2 hypothetical protein compare
BWI76_RS03415 -1.1 -2.9 LacI family transcriptional regulator compare
BWI76_RS01885 -1.1 -1.0 CsbD family protein compare
BWI76_RS25480 -1.1 -2.4 ribonuclease E/G compare
BWI76_RS25425 -1.1 -1.1 arginine repressor compare
BWI76_RS17945 -1.1 -1.8 hypothetical protein compare
BWI76_RS00140 -1.1 -1.1 phosphate transport system regulator PhoU compare
BWI76_RS22760 -1.1 -4.1 sulfite reductase subunit beta compare
BWI76_RS26190 -1.1 -4.3 glycerol-3-phosphate dehydrogenase compare
BWI76_RS19750 -1.1 -2.6 elongation factor P-like protein YeiP compare
BWI76_RS01385 -1.1 -1.5 potassium transporter compare
BWI76_RS19330 -1.1 -1.0 HAD family hydrolase compare
BWI76_RS01275 -1.1 -3.3 LysR family transcriptional regulator compare
BWI76_RS15110 -1.0 -6.1 putative excinuclease ABC subunit A compare
BWI76_RS05470 -1.0 -6.7 acyl-CoA dehydrogenase compare
BWI76_RS06495 -1.0 -3.7 cytochrome ubiquinol oxidase subunit II compare
BWI76_RS06395 -1.0 -2.3 tRNA 4-thiouridine(8) synthase ThiI compare
BWI76_RS19380 -1.0 -1.8 hydroxyethylthiazole kinase compare
BWI76_RS08110 -1.0 -1.7 glutamate/aspartate ABC transporter substrate-binding protein compare
BWI76_RS03880 -1.0 -2.2 homoprotocatechuate degradation operon regulator, HpaR compare
BWI76_RS27075 -1.0 -4.7 IclR family transcriptional regulator compare
BWI76_RS19840 -1.0 -1.0 hypothetical protein compare
BWI76_RS20730 -1.0 -1.5 hypothetical protein compare
BWI76_RS12170 -1.0 -1.4 hypothetical protein compare
BWI76_RS07450 -1.0 -1.5 transcriptional regulator compare
BWI76_RS13560 -1.0 -1.0 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS21480 -1.0 -3.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS19845 -0.9 -2.7 phosphatase compare
BWI76_RS20640 -0.9 -3.0 cysteine synthase A compare
BWI76_RS01530 -0.9 -2.8 2-iminoacetate synthase ThiH compare
BWI76_RS20720 -0.9 -0.9 hypothetical protein compare
BWI76_RS20750 -0.9 -0.9 carboxysome structural protein EutK compare
BWI76_RS13095 -0.9 -1.7 phenylacetate-CoA oxygenase subunit PaaB compare
BWI76_RS07765 -0.9 -1.7 thioesterase compare
BWI76_RS06200 -0.9 -1.8 hypothetical protein compare
BWI76_RS18575 -0.9 -1.4 transcriptional regulator compare
BWI76_RS01545 -0.9 -3.4 thiamine biosynthesis protein ThiS compare
BWI76_RS01555 -0.9 -3.9 phosphomethylpyrimidine synthase ThiC compare
BWI76_RS09335 -0.9 -1.1 baseplate assembly protein W compare


Specific Phenotypes

For 20 genes in this experiment

For supernatant Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms