Experiment set8IT046 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x

200 most important genes:

  gene name fitness t score description  
BWI76_RS18930 -9.4 -5.2 histidinol-phosphate transaminase compare
BWI76_RS20965 -9.1 -4.9 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS00850 -8.9 -8.7 acetylglutamate kinase compare
BWI76_RS00805 -8.7 -5.5 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS07065 -8.7 -6.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS18955 -8.6 -5.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS04250 -8.5 -5.9 homoserine kinase compare
BWI76_RS20355 -8.5 -4.8 colicin V production protein compare
BWI76_RS04670 -8.5 -5.9 3-isopropylmalate dehydratase large subunit compare
BWI76_RS23220 -8.5 -5.8 amino-acid N-acetyltransferase compare
BWI76_RS11965 -8.3 -5.4 orotidine-5'-phosphate decarboxylase compare
BWI76_RS04675 -8.3 -5.8 3-isopropylmalate dehydrogenase compare
BWI76_RS00990 -8.3 -5.7 ketol-acid reductoisomerase compare
BWI76_RS18950 -8.2 -5.1 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS21265 -7.8 -10.8 phosphoribosylformylglycinamidine synthase compare
BWI76_RS25115 -7.8 -7.6 argininosuccinate synthase compare
BWI76_RS20350 -7.8 -6.0 amidophosphoribosyltransferase compare
BWI76_RS00855 -7.7 -5.3 argininosuccinate lyase compare
BWI76_RS01610 -7.6 -8.6 phosphoribosylamine--glycine ligase compare
BWI76_RS00980 -7.5 -7.3 PLP-dependent threonine dehydratase compare
BWI76_RS20895 -7.4 -5.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS00985 -7.4 -5.1 transcriptional regulator IlvY compare
BWI76_RS09755 -7.4 -5.1 phosphoserine transaminase compare
BWI76_RS24285 -7.4 -7.2 cystathionine beta-lyase compare
BWI76_RS18940 -7.3 -5.0 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS21475 -7.2 -5.1 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS04465 -7.2 -5.0 carbamoyl-phosphate synthase small subunit compare
BWI76_RS13920 -7.2 -5.0 magnesium-translocating P-type ATPase compare
BWI76_RS01615 -7.2 -7.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS01655 -7.0 -7.7 homoserine O-succinyltransferase compare
BWI76_RS18920 -6.8 -4.3 ATP phosphoribosyltransferase compare
BWI76_RS07070 -6.8 -4.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS05835 -6.7 -4.3 gamma-glutamyl-phosphate reductase compare
BWI76_RS18925 -6.6 -6.0 histidinol dehydrogenase compare
BWI76_RS23920 -6.5 -5.9 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS27385 -6.5 -6.3 orotate phosphoribosyltransferase compare
BWI76_RS04685 -6.5 -8.9 putative leucine operon leader peptide compare
BWI76_RS11860 -6.4 -7.7 anthranilate synthase component I compare
BWI76_RS04470 -6.3 -8.7 carbamoyl phosphate synthase large subunit compare
BWI76_RS04665 -6.3 -18.7 3-isopropylmalate dehydratase small subunit compare
BWI76_RS08385 -6.3 -3.1 citrate (Si)-synthase compare
BWI76_RS04245 -6.3 -12.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS00785 -6.2 -6.1 cystathionine gamma-synthase compare
BWI76_RS02995 -6.2 -7.4 aspartate carbamoyltransferase compare
BWI76_RS04160 -6.2 -6.5 phosphoserine phosphatase compare
BWI76_RS23360 -6.2 -3.8 diaminopimelate decarboxylase compare
BWI76_RS00975 -6.2 -10.3 dihydroxy-acid dehydratase compare
BWI76_RS09645 -6.1 -2.0 thioredoxin-disulfide reductase compare
BWI76_RS09910 -6.1 -15.8 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS11850 -6.0 -5.6 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS00835 -5.9 -13.3 phosphoenolpyruvate carboxylase compare
BWI76_RS10990 -5.8 -2.9 dihydroorotase compare
BWI76_RS26085 -5.7 -3.2 3-dehydroquinate synthase compare
BWI76_RS00845 -5.7 -9.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS04255 -5.6 -8.2 threonine synthase compare
BWI76_RS22765 -5.6 -11.1 sulfite reductase subunit alpha compare
BWI76_RS02735 -5.5 -5.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS27390 -5.4 -3.8 ribonuclease PH compare
BWI76_RS11840 -5.3 -2.3 tryptophan synthase subunit alpha compare
BWI76_RS11855 -5.2 -5.4 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS01800 -5.2 -4.5 glucose-6-phosphate isomerase compare
BWI76_RS22755 -5.2 -6.5 phosphoadenosine phosphosulfate reductase compare
BWI76_RS04510 -5.2 -2.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS26000 -5.1 -8.5 aspartate aminotransferase family protein compare
BWI76_RS04645 -5.1 -5.3 3-dehydroquinase compare
BWI76_RS00965 -5.0 -1.6 acetolactate synthase 2 small subunit compare
BWI76_RS23365 -5.0 -4.5 LysR family transcriptional regulator compare
BWI76_RS18755 -5.0 -1.6 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS03010 -4.9 -5.7 ornithine carbamoyltransferase compare
BWI76_RS22760 -4.9 -7.3 sulfite reductase subunit beta compare
BWI76_RS04305 -4.8 -1.6 molecular chaperone DnaJ compare
BWI76_RS01200 -4.8 -3.3 diaminopimelate epimerase compare
BWI76_RS04680 -4.7 -10.6 2-isopropylmalate synthase compare
BWI76_RS21465 -4.5 -4.4 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS26055 -4.4 -7.8 siroheme synthase compare
BWI76_RS18935 -4.4 -6.8 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS25645 -4.4 -6.5 shikimate dehydrogenase compare
BWI76_RS06680 -4.4 -1.4 hypothetical protein compare
BWI76_RS05840 -4.2 -3.9 glutamate 5-kinase compare
BWI76_RS11845 -4.0 -2.2 tryptophan synthase subunit beta compare
BWI76_RS00400 -3.9 -2.2 glutamine synthetase compare
BWI76_RS05200 -3.9 -2.7 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS17720 -3.9 -1.3 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS00180 -3.9 -1.8 F0F1 ATP synthase subunit epsilon compare
BWI76_RS22690 -3.8 -4.2 adenylyl-sulfate kinase compare
BWI76_RS06525 -3.8 -5.3 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS18065 -3.7 -1.7 DNA polymerase III subunit theta compare
BWI76_RS15115 -3.6 -3.5 MFS transporter compare
BWI76_RS20435 -3.6 -1.6 chorismate synthase compare
BWI76_RS23240 -3.5 -2.4 exonuclease V subunit gamma compare
BWI76_RS15225 -3.3 -2.6 DeoR family transcriptional regulator compare
BWI76_RS09255 -3.2 -2.8 hypothetical protein compare
BWI76_RS05015 -3.1 -2.5 transcriptional regulator compare
BWI76_RS20650 -3.1 -2.1 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS01210 -3.0 -2.0 tyrosine recombinase XerC compare
BWI76_RS01545 -3.0 -4.4 thiamine biosynthesis protein ThiS compare
BWI76_RS23230 -2.9 -2.0 exodeoxyribonuclease V subunit beta compare
BWI76_RS02530 -2.9 -2.5 tRNA dimethylallyltransferase compare
BWI76_RS00960 -2.8 -3.3 acetolactate synthase 2 catalytic subunit compare
BWI76_RS26570 -2.8 -3.1 anion permease compare
BWI76_RS04240 -2.7 -1.0 thr operon leader peptide compare
BWI76_RS00440 -2.6 -1.5 CopG family transcriptional regulator compare
BWI76_RS09660 -2.6 -1.8 DNA translocase FtsK compare
BWI76_RS20380 -2.6 -1.2 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS20640 -2.4 -5.6 cysteine synthase A compare
BWI76_RS25600 -2.4 -1.1 tRNA-Thr compare
BWI76_RS21285 -2.4 -1.5 HAD family hydrolase compare
BWI76_RS23265 -2.4 -2.9 hypothetical protein compare
BWI76_RS26045 -2.3 -1.6 nitrite reductase small subunit compare
BWI76_RS23015 -2.2 -1.4 cobalt transporter ATP-binding subunit compare
BWI76_RS24885 -2.2 -1.6 PTS galactitol transporter subunit IIB compare
BWI76_RS19935 -2.2 -1.4 hypothetical protein compare
BWI76_RS13600 -2.2 -3.1 hypothetical protein compare
BWI76_RS20440 -2.2 -1.4 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS11170 -2.1 -1.2 hypothetical protein compare
BWI76_RS21140 -2.1 -2.6 molecular chaperone HscA compare
BWI76_RS09760 -2.1 -1.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS25335 -2.1 -3.0 stringent starvation protein A compare
BWI76_RS01275 -2.0 -4.6 LysR family transcriptional regulator compare
BWI76_RS13915 -2.0 -4.3 magnesium transport protein MgtC compare
BWI76_RS01885 -2.0 -1.1 CsbD family protein compare
BWI76_RS18885 -2.0 -2.1 nitrogen fixation regulatory protein compare
BWI76_RS21505 -2.0 -1.1 hypothetical protein compare
BWI76_RS17965 -1.9 -3.7 MFS transporter compare
BWI76_RS22695 -1.9 -3.1 sulfate adenylyltransferase compare
BWI76_RS03850 -1.9 -4.6 2-oxo-hepta-3-ene-1,7-dioic acid hydratase compare
BWI76_RS24920 -1.9 -2.6 YraN family protein compare
BWI76_RS25280 -1.9 -1.7 RNase adaptor protein RapZ compare
BWI76_RS09655 -1.8 -3.3 leucine-responsive regulatory protein compare
BWI76_RS01630 -1.8 -1.2 16S ribosomal RNA compare
BWI76_RS23480 -1.8 -7.9 EAL domain-containing protein compare
BWI76_RS10945 -1.8 -1.8 SecY/SecA suppressor protein compare
BWI76_RS24900 -1.8 -1.3 DeoR family transcriptional regulator compare
BWI76_RS24720 -1.8 -1.8 hypothetical protein compare
BWI76_RS13250 -1.8 -1.0 cytochrome b561 compare
BWI76_RS01185 -1.8 -2.3 adenylate cyclase compare
BWI76_RS14435 -1.8 -1.3 glutamine ABC transporter ATP-binding protein compare
BWI76_RS22475 -1.7 -1.8 heme ABC transporter ATP-binding protein compare
BWI76_RS07730 -1.7 -1.1 iron-enterobactin transporter membrane protein compare
BWI76_RS15215 -1.7 -1.0 N-acetyltransferase compare
BWI76_RS15110 -1.7 -7.8 putative excinuclease ABC subunit A compare
BWI76_RS19575 -1.7 -2.3 maleylacetoacetate isomerase compare
BWI76_RS14980 -1.7 -1.4 hypothetical protein compare
BWI76_RS06800 -1.6 -1.1 DUF2496 domain-containing protein compare
BWI76_RS19840 -1.6 -0.9 hypothetical protein compare
BWI76_RS20155 -1.6 -1.2 NADH-quinone oxidoreductase subunit I compare
BWI76_RS03295 -1.6 -1.6 transposase compare
BWI76_RS06395 -1.6 -3.1 tRNA 4-thiouridine(8) synthase ThiI compare
BWI76_RS01870 -1.6 -1.3 diacylglycerol kinase compare
BWI76_RS16485 -1.6 -1.4 ribonuclease T compare
BWI76_RS24025 -1.6 -3.7 agmatinase compare
BWI76_RS08985 -1.6 -1.9 threonine/homoserine exporter RhtA compare
BWI76_RS15620 -1.6 -1.2 hypothetical protein compare
BWI76_RS02410 -1.5 -1.8 EF-P beta-lysylation protein EpmB compare
BWI76_RS22645 -1.5 -3.6 RNA polymerase sigma factor RpoS compare
BWI76_RS11130 -1.5 -5.2 PTS glucose transporter subunit IIBC compare
BWI76_RS11820 -1.5 -1.0 short-chain dehydrogenase/reductase SDR compare
BWI76_RS00390 -1.5 -2.8 two-component system sensor histidine kinase NtrB compare
BWI76_RS06530 -1.5 -4.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS27865 -1.5 -2.0 hypothetical protein compare
BWI76_RS21570 -1.5 -1.7 RnfH family protein compare
BWI76_RS25320 -1.5 -3.9 glutamate synthase compare
BWI76_RS22205 -1.5 -1.7 cation ABC transporter ATP-binding protein compare
BWI76_RS00380 -1.5 -4.9 oxygen-independent coproporphyrinogen III oxidase compare
BWI76_RS01540 -1.5 -1.4 thiamine biosynthesis protein ThiS compare
BWI76_RS16910 -1.5 -1.7 2-keto-4-pentenoate hydratase compare
BWI76_RS25315 -1.5 -6.1 glutamate synthase large subunit compare
BWI76_RS22700 -1.5 -2.0 sulfate adenylyltransferase subunit 2 compare
BWI76_RS10435 -1.4 -1.9 suppressor for copper-sensitivity C compare
BWI76_RS15830 -1.4 -2.0 hypothetical protein compare
BWI76_RS00355 -1.4 -2.1 DNA polymerase I compare
BWI76_RS21810 -1.4 -1.1 universal stress protein compare
BWI76_RS01530 -1.4 -3.4 2-iminoacetate synthase ThiH compare
BWI76_RS18455 -1.4 -1.0 tRNA-Ser compare
BWI76_RS22300 -1.4 -1.4 hydrogenase 3 maturation endopeptidase HyCI compare
BWI76_RS15680 -1.4 -2.4 hypothetical protein compare
BWI76_RS17975 -1.4 -2.6 tail-specific protease compare
BWI76_RS27175 -1.4 -2.9 hypothetical protein compare
BWI76_RS19275 -1.4 -3.7 DNA-binding response regulator compare
BWI76_RS11235 -1.4 -0.9 hypothetical protein compare
BWI76_RS15360 -1.3 -1.8 hypothetical protein compare
BWI76_RS19845 -1.3 -5.2 phosphatase compare
BWI76_RS14155 -1.3 -1.3 transketolase compare
BWI76_RS23455 -1.3 -2.6 Na(+)-translocating NADH-quinone reductase subunit E compare
BWI76_RS19025 -1.3 -6.0 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
BWI76_RS09905 -1.3 -2.8 FMN reductase (NADPH) compare
BWI76_RS06130 -1.3 -1.8 extensin family protein compare
BWI76_RS10575 -1.3 -1.1 polar amino acid ABC transporter permease compare
BWI76_RS01205 -1.3 -1.4 DUF484 family protein compare
BWI76_RS02725 -1.3 -0.8 HxlR family transcriptional regulator compare
BWI76_RS12375 -1.3 -1.7 DNA-invertase hin compare
BWI76_RS06770 -1.3 -4.8 Hha toxicity attenuator compare
BWI76_RS13560 -1.3 -0.7 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS00095 -1.3 -2.0 DNA-binding transcriptional regulator compare
BWI76_RS24400 -1.3 -4.6 outer membrane channel protein TolC compare
BWI76_RS25065 -1.3 -2.4 polyribonucleotide nucleotidyltransferase compare
BWI76_RS10735 -1.2 -1.4 hypothetical protein compare
BWI76_RS22705 -1.2 -4.1 siroheme synthase compare
BWI76_RS23915 -1.2 -1.2 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS21310 -1.2 -0.7 DNA repair protein RecO compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms