Experiment set8IT046 for Desulfovibrio vulgaris Hildenborough JW710

Compare to:

Formate/Acetate-Sulfite (60/30-60 mM)

200 most detrimental genes:

  gene name fitness t score description  
DVU2454 +1.3 1.2 hypothetical protein (TIGR) compare
DVU1520 +1.1 1.5 hypothetical protein (TIGR) compare
DVU1748 +0.9 0.9 conserved hypothetical protein (TIGR) compare
DORF11799 +0.8 3.0 no description compare
DVU0196 +0.7 1.1 hypothetical protein (TIGR) compare
DVU1210 +0.7 0.5 conserved hypothetical protein (TIGR) compare
DVU0035 +0.7 1.1 hypothetical protein (TIGR) compare
DVU1796 +0.7 1.1 hypothetical protein (TIGR) compare
DVU1154 +0.7 0.7 hypothetical protein (TIGR) compare
DVU2220 +0.6 1.6 conserved hypothetical protein (TIGR) compare
DVU1470 ppiC +0.6 1.8 peptidyl-prolyl cis-trans isomerase C (TIGR) compare
DVU1838 trxB-2 +0.6 2.0 thioredoxin reductase (TIGR) compare
DVU1174 +0.6 1.6 hypothetical protein (TIGR) compare
DVU0793 +0.6 1.7 hypothetical protein (TIGR) compare
DVU2045 +0.6 2.9 hypothetical protein (TIGR) compare
DVU0436 +0.6 0.8 transcriptional regulator, TetR family (TIGR) compare
DVU2293 cooF +0.6 0.7 iron-sulfur protein CooF (TIGR) compare
DVU0842 +0.5 1.8 hypothetical protein (TIGR) compare
DVU3225 +0.5 3.4 hypothetical protein (TIGR) compare
DVU2198 +0.5 0.5 hypothetical protein (TIGR) compare
DVU0689 rnhA +0.5 1.1 ribonuclease HI (TIGR) compare
DORF28817 +0.5 1.9 no description compare
DVU2893 flgG +0.5 1.3 flagellar basal-body rod protein, putative (TIGR) compare
DORF29743 +0.5 1.5 no description compare
DVU0227 +0.5 1.2 conserved hypothetical protein (TIGR) compare
DORF12360 +0.5 2.7 SEED: FIG00605053: hypothetical protein compare
DVU2184 +0.5 2.9 DNA-binding domain, excisionase family (TIGR) compare
DVU0257 +0.5 0.9 acetyltransferase, GNAT family (TIGR) compare
DVU3109 +0.5 1.9 iron-sulfur cluster-binding protein (TIGR) compare
DVU2894 flrA +0.5 3.5 sigma-54 dependent transcriptional regulator (TIGR) compare
DVU1336 clpX +0.5 1.7 ATP-dependent Clp protease, ATP-binding subunit ClpX (TIGR) compare
DVU1577 hslV +0.5 1.2 ATP-dependent protease hslV (TIGR) compare
DVU2289 b2488 +0.5 0.4 hydrogenase, CooX subunit, putative (TIGR) compare
DVU2577 +0.4 2.5 DNA-binding response regulator, LuxR family (TIGR) compare
DVU2881 +0.4 1.7 phage/plasmid primase, P4 family (TIGR) compare
DVU1271 +0.4 3.1 general secretion pathway protein F, putative (TIGR) compare
DVU1726 +0.4 0.7 hypothetical protein (TIGR) compare
DVU1859 +0.4 1.2 hypothetical protein (TIGR) compare
DVU1974 +0.4 2.3 pyridine nucleotide-disulfide oxidoreductase (TIGR) compare
DVU2875 +0.4 1.7 DNA-binding domain, excisionase family (TIGR) compare
DVU0987 +0.4 0.7 heavy metal-binding domain protein (TIGR) compare
DVU3234 +0.4 2.1 flagellar biosynthetic protein FliR (TIGR) compare
DVU2853 +0.4 1.4 phage baseplate assembly protein V, putative (TIGR) compare
DVU0300 +0.4 0.3 radical SAM domain protein (TIGR) compare
DVU3208 +0.4 1.5 membrane protein, putative (TIGR) compare
DVU2081 +0.4 0.9 hypothetical protein (TIGR) compare
DVU0910 fliM +0.4 2.6 flagellar motor switch protein FliM (TIGR) compare
DORF16094 +0.4 1.0 SEED: FIG00605483: hypothetical protein compare
DVU2692 +0.4 0.4 conserved domain protein (TIGR) compare
DVU0044 fliP +0.4 1.9 flagellar biosynthetic protein fliP (TIGR) compare
DVU1409 +0.4 2.3 hypothetical protein (TIGR) compare
DVU1729 +0.4 1.5 killer protein, putative (TIGR) compare
DVU2247 ahpC +0.4 2.1 alkyl hydroperoxide reductase C (Dmitry Rodionov) compare
DVU1452 dtd +0.4 1.5 D-tyrosyl-tRNA(Tyr) deacylase (TIGR) compare
DVU2915 +0.4 1.5 hypothetical protein (TIGR) compare
DVU2191 +0.4 1.8 hypothetical protein (TIGR) compare
DVU0313 fliF +0.4 3.1 flagellar M-ring protein FliF (TIGR) compare
DVU3139 +0.4 1.2 bacterial extracellular solute-binding protein, family 3 (TIGR) compare
DVU0034 +0.4 2.4 DSBA-like thioredoxin domain protein (TIGR) compare
DVU2177 +0.4 0.4 hypothetical protein (TIGR) compare
DVU2390 +0.4 1.9 TonB domain protein (TIGR) compare
DVU2291 +0.4 1.0 carbon monoxide-induced hydrogenase CooH, putative (TIGR) compare
DVU0913 +0.4 1.4 conserved hypothetical protein (TIGR) compare
DORF807 +0.4 1.5 no description compare
DVU2872 +0.4 2.6 phage portal protein, lambda family (TIGR) compare
DVU2846 +0.4 1.0 hypothetical protein (TIGR) compare
DVU1557 +0.4 1.2 hypothetical protein (TIGR) compare
DVUA0031 +0.4 2.4 hypothetical protein (TIGR) compare
DORF8192 +0.4 1.1 SEED: FIG00606834: hypothetical protein compare
DVU0475 +0.4 1.2 membrane protein, putative, truncation (TIGR) compare
DVU2592 +0.4 1.6 hypothetical protein (TIGR) compare
DVU2048 +0.4 0.2 hypothetical protein (TIGR) compare
DVU1940 glpA +0.4 2.5 anaerobic glycerol-3-phosphate dehydrogenase, A subunit, putative (TIGR) compare
DORF10632 +0.4 2.4 SEED: FIG00602944: hypothetical protein compare
DVU0516 flgI +0.4 2.7 flagellar P-ring protein FlgI (TIGR) compare
DVU0514 +0.4 2.3 FlgA family protein (TIGR) compare
DVU0307 +0.4 2.6 flagella basal body rod domain protein (TIGR) compare
DVU0298 +0.4 1.2 hypothetical protein (TIGR) compare
DVU2619 +0.3 1.4 conserved hypothetical protein (TIGR) compare
DVU1791 +0.3 0.9 GatB/Yqey family protein (TIGR) compare
DVU0817 +0.3 1.4 hypothetical protein (TIGR) compare
DVU0311 +0.3 1.7 flagellar assembly protein FliH, putative (TIGR) compare
DVU1646 arsC +0.3 1.5 arsenate reductase (TIGR) compare
DVU2016 +0.3 1.1 GGDEF domain protein (TIGR) compare
DVU1863 +0.3 2.2 flagellar synthesis regulator FleN, putative (TIGR) compare
DVU0045 +0.3 1.9 flagellar biosynthesis protein, FliO, putative (TIGR) compare
DVU2007 +0.3 0.9 nuclease, putative (TIGR) compare
DVU_tRNA-Thr-1 tRNA-Thr +0.3 0.3 tRNA with anticodon GGT for Thr (VIMSS-AUTO) compare
DVU0711 +0.3 1.4 hypothetical protein (TIGR) compare
DVU2187 +0.3 1.6 hypothetical protein (TIGR) compare
DVU1188 +0.3 1.7 hypothetical protein (TIGR) compare
DVU1001 b0965 +0.3 1.6 coenzyme A binding protein (TIGR) compare
DVU3348 +0.3 0.5 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit, putative (TIGR) compare
DVU0310 fliI +0.3 2.5 flagellum-specific ATP synthase FliI (TIGR) compare
DORF12455 +0.3 1.0 SEED: helix-turn-helix protein, CopG family compare
DVU0629 +0.3 1.7 transcriptional regulator, TetR family (TIGR) compare
DVU2427 +0.3 2.1 hypothetical protein (TIGR) compare
DVU2567 lysX +0.3 0.8 predicted transcriptional regulator for lysine biosynthesis and transport (Dmitry Rodionov) compare
DVUA0092 +0.3 2.3 hypothetical protein (TIGR) compare
DVU2172 +0.3 1.1 hypothetical protein (TIGR) compare
DVU0534 hmcC +0.3 2.0 HmcC, 43.2 kd protein in hmc operon (voordouw) compare
DVU1087 +0.3 1.4 conserved hypothetical protein (TIGR) compare
DVU1870 +0.3 2.3 cyclase, putative (TIGR) compare
DVU2283 +0.3 0.6 hypothetical protein (TIGR) compare
DVU2330 E.coliMinDlike) +0.3 0.8 MRP family protein (TIGR) compare
DVU1347 +0.3 2.0 peptidase, M23/M37 family (TIGR) compare
DVU0501 +0.3 1.8 conserved hypothetical protein (TIGR) compare
DVU1238 +0.3 1.7 amino acid ABC transporter, periplasmic amino acid-binding protein (TIGR) compare
DVU1273 +0.3 2.2 bacterial type II/III secretion system protein (TIGR) compare
DORF14945 +0.3 1.2 no description compare
DVU1854 +0.3 1.5 hypothetical protein (TIGR) compare
DVU2391 +0.3 0.2 hypothetical protein (TIGR) compare
DVU0740 +0.3 2.1 membrane protein, putative (TIGR) compare
DVU0522 yviF +0.3 1.5 conserved hypothetical protein (TIGR) compare
DVU0947 +0.3 1.8 membrane protein, putative (TIGR) compare
DVU3153 +0.3 1.2 hypothetical protein (TIGR) compare
DVU0315 flgC +0.3 2.2 flagellar basal-body rod protein FlgC (TIGR) compare
DVU1276 +0.3 2.2 hypothetical protein (TIGR) compare
DVU2888 +0.3 1.5 cobalt ABC transporter, ATP-binding protein, putative (TIGR) compare
DVU2719 +0.3 1.5 conserved hypothetical protein (TIGR) compare
DORF19323 +0.3 1.1 no description compare
DVU3184 +0.3 1.6 rubredoxin (TIGR) compare
DVU0028 csaA +0.3 1.0 chaperone CsaA (TIGR) compare
DVU2838 +0.3 1.3 conserved hypothetical protein (TIGR) compare
DVU3299 +0.3 0.8 membrane protein, putative (TIGR) compare
DVU2227 +0.3 1.5 hypothetical protein (TIGR) compare
DVU0766 +0.3 1.9 transporter, putative (TIGR) compare
DVU3046 +0.3 1.5 glycosyl transferase, group 1 family protein (TIGR) compare
DVU2647 +0.3 1.8 endoribonuclease, L-PSP family (TIGR) compare
DVU0455 +0.3 0.9 hypothetical protein (TIGR) compare
DVU0046 fliN +0.3 1.7 flagellar motor switch protein FliN (TIGR) compare
DORF47110 +0.3 1.0 no description compare
DVU0290 +0.3 1.6 lipoprotein, putative (TIGR) compare
DVU0063 +0.3 0.8 transcriptional regulator, MarR family (TIGR) compare
DVU2138 +0.3 0.8 conserved hypothetical protein (TIGR) compare
DVU1132 +0.3 1.1 conserved hypothetical protein (TIGR) compare
DVU2070 +0.3 1.1 TPR domain protein (TIGR) compare
DVU2831 +0.3 1.0 hypothetical protein (TIGR) compare
DVU1875 +0.3 1.2 dafA protein (TIGR) compare
DVU2578 +0.3 1.7 response regulator (TIGR) compare
DVU1263 pppA +0.3 1.0 type IV prepilin-like proteins leader peptidase (TIGR) compare
DVU0748 acs +0.3 1.6 acetyl-CoA synthetase (TIGR) compare
DVU1076 +0.3 0.7 conserved hypothetical protein TIGR00278 (TIGR) compare
DVU3177 +0.3 1.3 hypothetical protein (TIGR) compare
DVU1429 +0.3 0.3 GTP-binding protein (TIGR) compare
DVU3111 +0.3 1.9 transcriptional regulator, Crp/Fnr family (TIGR) compare
DVU0359 +0.3 0.9 HesB-like domain (TIGR) compare
DVU1744 +0.3 1.1 DNA-binding protein (TIGR) compare
DVU1251 +0.3 0.7 hypothetical protein (TIGR) compare
DVU1862 +0.3 1.0 GGDEF domain protein (TIGR) compare
DVU1057 nikQ +0.3 0.6 component of nickel ABC transport system (Dmitry Rodionov) compare
DORF24435 +0.3 0.8 SEED: Sll1863 protein compare
DVU2100 +0.3 1.3 universal stress protein family (TIGR) compare
DVU1815 +0.3 1.8 cytochrome c oxidase, subunit I, putative (TIGR) compare
DVU0902 +0.3 1.8 TPR domain protein (TIGR) compare
DVU2409 +0.3 1.3 bacterial extracellular solute-binding proteins, family 3 (TIGR) compare
DVU3311 +0.3 1.1 hypothetical protein (TIGR) compare
DVU2621 +0.3 1.6 hypothetical protein (TIGR) compare
DVU0410 +0.3 1.9 hypothetical protein (TIGR) compare
DVU0245 +0.3 1.4 protein phosphatase, putative (TIGR) compare
DVU0533 hmcD +0.3 0.4 HmcD, 5.8 kd protein in hmc operon (voordouw) compare
DVUA0088 +0.3 1.9 conserved hypothetical protein (TIGR) compare
DVU0666 +0.3 1.3 HD domain protein (TIGR) compare
DVU1722 +0.3 0.9 hypothetical protein (TIGR) compare
DVUA0020.1 +0.3 1.8 SEED: FIG00604339: hypothetical protein compare
DORF10920 +0.3 1.1 no description compare
DVU1292 +0.2 0.7 hypothetical protein (TIGR) compare
DVU2670 +0.2 0.5 hypothetical protein (TIGR) compare
DVU1265 +0.2 1.7 hypothetical protein (TIGR) compare
DVU1984 msrA +0.2 0.9 peptide methionine sulfoxide reductase MsrA (TIGR) compare
DVU0146 +0.2 1.6 hypothetical protein (TIGR) compare
DVU2345 +0.2 0.7 hypothetical protein (TIGR) compare
DVU1527 +0.2 1.6 site-specific recombinase, phage integrase family (TIGR) compare
DVU2152 +0.2 1.6 hypothetical protein (TIGR) compare
DVU1948 +0.2 1.0 conserved hypothetical protein (TIGR) compare
DVU3024 +0.2 0.3 hypothetical protein (TIGR) compare
DVU0556 +0.2 0.2 ISDvu3, transposase OrfA (TIGR) compare
DVU3283 +0.2 0.5 hypothetical protein (TIGR) compare
DVU2364 +0.2 1.1 aminotransferase, classes I and II (TIGR) compare
DVU2630 +0.2 1.2 lipoprotein, putative (TIGR) compare
DVU1988 +0.2 1.2 membrane protein, putative (TIGR) compare
DVU1496 +0.2 0.9 hypothetical protein (TIGR) compare
DVU0108 +0.2 0.9 hypothetical protein (TIGR) compare
DVU1727 +0.2 0.7 hypothetical protein (TIGR) compare
DVU3089 +0.2 0.6 hypothetical protein (TIGR) compare
DVU1687 +0.2 1.1 glycosyl transferase, group 2 family protein (TIGR) compare
DVU1951 +0.2 1.2 indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative (TIGR) compare
DVU2866 +0.2 1.1 conserved hypothetical protein (TIGR) compare
DVU2418 +0.2 1.1 vanZ-like family protein (TIGR) compare
DVU0499 +0.2 0.7 conserved hypothetical protein TIGR00149 (TIGR) compare
DVU1589 +0.2 1.8 hypothetical protein (TIGR) compare
DVU1530 +0.2 1.5 metallo-beta-lactamase family protein (TIGR) compare
DVU1536 mltC +0.2 1.5 transglycosylase, SLT family (TIGR) compare
DVU3344 +0.2 1.7 hypothetical protein (TIGR) compare
DVU1548 +0.2 1.6 outer membrane transport protein, OmpP1/FadL/TodX family (TIGR) compare
DORF14879 +0.2 1.3 no description compare
DVU1695 +0.2 0.9 tail fiber assembly protein, putative (TIGR) compare
DVU3325 +0.2 0.4 hypothetical protein (TIGR) compare
DVU0411 +0.2 1.7 heptosyltransferase family protein (TIGR) compare
DVU0078 +0.2 1.1 conserved hypothetical protein (TIGR) compare


Specific Phenotypes

None in this experiment

For Desulfovibrio vulgaris Hildenborough JW710 in respiratory growth experiments

For respiratory growth Sodium Formate across organisms