Experiment set8IT045 for Pseudomonas fluorescens FW300-N2E2

Compare to:

D-Trehalose dihydrate carbon source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4047 -4.8 -5.7 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_178 -4.8 -1.7 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3839 -4.1 -5.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3611 -3.9 -2.4 HflC protein compare
Pf6N2E2_2574 -3.8 -2.6 Flagellar synthesis regulator FleN compare
Pf6N2E2_3782 -3.7 -5.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_71 -3.7 -5.8 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_5252 -3.4 -2.7 FIG00956396: hypothetical protein compare
Pf6N2E2_2753 -3.1 -3.0 HtrA protease/chaperone protein compare
Pf6N2E2_4987 -3.1 -1.6 MaoC-like domain protein compare
Pf6N2E2_64 -3.1 -2.9 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3630 -3.1 -5.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5156 -3.1 -3.6 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2869 -3.0 -2.5 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_3941 -3.0 -4.4 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5160 -3.0 -1.8 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_942 -2.8 -2.7 Mll6465 protein compare
Pf6N2E2_3253 -2.8 -6.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3460 -2.8 -1.9 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4825 -2.7 -7.5 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_5175 -2.7 -10.7 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_3282 -2.7 -1.8 FIG005080: Possible exported protein compare
Pf6N2E2_2756 -2.7 -7.9 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_3842 -2.7 -3.9 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_66 -2.6 -7.7 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3932 -2.6 -5.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_4638 -2.6 -4.2 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_4048 -2.5 -5.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_5177 -2.5 -8.1 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3875 -2.5 -1.7 FIG00953324: hypothetical protein compare
Pf6N2E2_5766 -2.4 -1.4 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_3984 -2.4 -9.9 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_77 -2.4 -2.4 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_2010 -2.4 -1.8 hypothetical protein compare
Pf6N2E2_5579 -2.4 -8.0 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_5006 -2.4 -7.3 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3841 -2.4 -5.4 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3248 -2.3 -4.3 Probable transmembrane protein compare
Pf6N2E2_4059 -2.3 -1.4 DNA-binding protein HU-alpha compare
Pf6N2E2_4564 -2.3 -6.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_3062 -2.3 -4.5 Membrane-associated zinc metalloprotease compare
Pf6N2E2_4597 -2.3 -6.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4596 -2.2 -6.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3240 -2.2 -1.7 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_2674 -2.2 -1.3 FIG00953856: hypothetical protein compare
Pf6N2E2_342 -2.2 -1.5 DNA-binding response regulator compare
Pf6N2E2_1056 -2.1 -1.0 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_3751 -2.1 -8.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_2003 -2.1 -1.8 hypothetical protein compare
Pf6N2E2_4826 -2.1 -3.8 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3060 -2.1 -2.1 Outer membrane protein H precursor compare
Pf6N2E2_2073 -2.0 -6.7 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_4009 -2.0 -6.8 GGDEF domain protein compare
Pf6N2E2_3252 -2.0 -6.5 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5768 -2.0 -4.0 DNA recombination-dependent growth factor C compare
Pf6N2E2_3349 -1.9 -2.9 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_2258 -1.9 -8.2 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_2510 -1.9 -4.1 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_3752 -1.9 -11.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_2897 -1.9 -6.8 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_623 -1.9 -1.7 FIG00954674: hypothetical protein compare
Pf6N2E2_2217 -1.8 -4.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_1113 -1.8 -3.7 Transcriptional regulator, TetR family compare
Pf6N2E2_3610 -1.8 -3.3 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3505 -1.8 -1.1 Translation initiation factor SUI1-related protein compare
Pf6N2E2_5176 -1.8 -5.8 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_4508 -1.8 -3.7 Transcriptional regulator, TetR family compare
Pf6N2E2_3783 -1.7 -4.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3480 -1.7 -1.8 Transcriptional regulator, ArsR family compare
Pf6N2E2_3661 -1.7 -5.4 hypothetical protein compare
Pf6N2E2_2752 -1.7 -6.0 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_4584 -1.7 -2.2 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_2277 -1.7 -2.2 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_1400 -1.7 -6.7 Sensory box histidine kinase/response regulator compare
Pf6N2E2_658 -1.6 -6.6 sensor histidine kinase compare
Pf6N2E2_4057 -1.6 -1.0 lipoprotein, putative compare
Pf6N2E2_3569 -1.6 -1.6 hypothetical protein compare
Pf6N2E2_987 -1.6 -2.2 hypothetical protein compare
Pf6N2E2_1972 -1.6 -1.9 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_5536 -1.6 -1.7 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4372 -1.6 -4.1 FIG00460773: hypothetical protein compare
Pf6N2E2_5086 -1.6 -1.2 hypothetical protein compare
Pf6N2E2_1095 -1.6 -2.0 Opine oxidase subunit C compare
Pf6N2E2_5510 -1.5 -2.3 FIG00955324: hypothetical protein compare
Pf6N2E2_5255 -1.5 -7.0 Outer membrane stress sensor protease DegS compare
Pf6N2E2_2072 -1.5 -3.1 hypothetical protein compare
Pf6N2E2_893 -1.5 -2.7 hypothetical protein compare
Pf6N2E2_3170 -1.5 -5.5 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_63 -1.5 -3.3 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_1317 -1.5 -3.5 P-hydroxyphenylacetate hydroxylase C2:oxygenase component compare
Pf6N2E2_6164 -1.5 -1.0 tRNA-Val-TAC compare
Pf6N2E2_5739 -1.5 -1.3 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_3271 -1.4 -1.7 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_1896 -1.4 -2.0 hypothetical protein compare
Pf6N2E2_1248 -1.4 -2.4 MutT/nudix family protein compare
Pf6N2E2_1932 -1.4 -3.1 Transcriptional regulator, IclR family compare
Pf6N2E2_2938 -1.4 -3.1 Outer membrane lipoprotein compare
Pf6N2E2_288 -1.4 -1.5 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_2218 -1.4 -2.9 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_4963 -1.4 -1.6 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_1371 -1.3 -2.1 hypothetical protein compare
Pf6N2E2_2296 -1.3 -3.0 FIG00954767: hypothetical protein compare
Pf6N2E2_5014 -1.3 -1.1 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3777 -1.3 -3.6 polyhydroxyalkanoate granule-associated protein PhaI compare
Pf6N2E2_1917 -1.3 -2.1 hypothetical protein compare
Pf6N2E2_4305 -1.3 -1.0 FIG00959590: hypothetical protein compare
Pf6N2E2_5524 -1.3 -7.2 Outer membrane porin, OprD family compare
Pf6N2E2_1893 -1.3 -2.2 hypothetical protein compare
Pf6N2E2_3667 -1.2 -1.0 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_5646 -1.2 -1.6 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_2549 -1.2 -1.2 hypothetical protein compare
Pf6N2E2_533 -1.2 -2.3 Na(+) H(+) antiporter subunit G compare
Pf6N2E2_1656 -1.2 -2.2 hypothetical protein compare
Pf6N2E2_2034 -1.2 -2.4 Methyltransferase compare
Pf6N2E2_1676 -1.2 -1.6 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_3834 -1.2 -4.3 Lipoprotein NlpD compare
Pf6N2E2_2984 -1.2 -1.8 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_58 -1.2 -1.9 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_1401 -1.2 -4.4 FIG00955631: hypothetical protein compare
Pf6N2E2_2501 -1.2 -1.7 hypothetical protein compare
Pf6N2E2_180 -1.2 -2.0 Transcriptional regulator, MerR family compare
Pf6N2E2_3219 -1.2 -2.4 hypothetical protein compare
Pf6N2E2_3810 -1.2 -3.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_971 -1.2 -1.1 hypothetical protein compare
Pf6N2E2_3255 -1.1 -2.6 YrbA protein compare
Pf6N2E2_1302 -1.1 -3.1 TRAP-type C4-dicarboxylate transport system, large permease component compare
Pf6N2E2_5012 -1.1 -2.6 FIG00954871: hypothetical protein compare
Pf6N2E2_241 -1.1 -0.9 hypothetical protein compare
Pf6N2E2_3942 -1.1 -5.3 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_5242 -1.1 -1.7 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_5342 -1.1 -2.0 21 kDa hemolysin precursor compare
Pf6N2E2_70 -1.1 -2.0 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_1833 -1.1 -3.4 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / Enoyl CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_350 -1.1 -1.7 Gfa-like protein compare
Pf6N2E2_4181 -1.1 -0.8 Organic hydroperoxide resistance protein compare
Pf6N2E2_237 -1.1 -1.8 hypothetical protein compare
Pf6N2E2_4517 -1.1 -3.5 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Pf6N2E2_5972 -1.1 -1.8 hypothetical protein compare
Pf6N2E2_2413 -1.1 -1.3 FIG074102: hypothetical protein compare
Pf6N2E2_75 -1.1 -2.8 Colicin V production protein compare
Pf6N2E2_1381 -1.1 -3.7 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_3260 -1.1 -2.9 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_4611 -1.1 -2.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2281 -1.1 -1.4 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_4204 -1.0 -0.9 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_1476 -1.0 -2.2 (AF179595) Vco33 compare
Pf6N2E2_3118 -1.0 -2.7 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf6N2E2_433 -1.0 -3.0 Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9) compare
Pf6N2E2_2507 -1.0 -3.4 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_5238 -1.0 -3.8 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf6N2E2_4921 -1.0 -2.4 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25) compare
Pf6N2E2_2144 -1.0 -2.5 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_4599 -1.0 -2.2 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_2586 -1.0 -1.4 Hpt domain protein compare
Pf6N2E2_2324 -1.0 -1.6 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_4188 -1.0 -2.0 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Pf6N2E2_4448 -1.0 -2.6 probable P23 protein compare
Pf6N2E2_578 -1.0 -2.0 Mobile element protein compare
Pf6N2E2_1294 -1.0 -1.2 Carbon starvation protein A compare
Pf6N2E2_1178 -1.0 -3.2 3-oxoacyl-(acyl-carrier-protein) synthase compare
Pf6N2E2_377 -1.0 -1.9 hypothetical protein compare
Pf6N2E2_1534 -1.0 -1.0 Probable transmembrane protein compare
Pf6N2E2_1128 -1.0 -1.4 Two-component response regulator compare
Pf6N2E2_5137 -1.0 -1.3 FIG00956650: hypothetical protein compare
Pf6N2E2_4764 -1.0 -3.3 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_2588 -1.0 -2.4 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_5476 -1.0 -1.4 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_5910 -1.0 -1.4 Flp pilus assembly protein RcpC/CpaB compare
Pf6N2E2_2119 -1.0 -2.7 hypothetical protein compare
Pf6N2E2_6090 -0.9 -1.2 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_229 -0.9 -1.9 Putative fumarylacetoacetate (FAA) hydrolase compare
Pf6N2E2_1667 -0.9 -2.5 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_4742 -0.9 -2.6 Glutathione S-transferase family protein compare
Pf6N2E2_3665 -0.9 -0.7 serine/threonine protein kinase compare
Pf6N2E2_1402 -0.9 -2.8 hypothetical protein compare
Pf6N2E2_6099 -0.9 -1.0 tRNA-Glu-TTC compare
Pf6N2E2_1312 -0.9 -1.7 4-hydroxyphenylacetate symporter, major facilitator superfamily (MFS) compare
Pf6N2E2_5527 -0.9 -1.1 Cold shock protein CspC compare
Pf6N2E2_238 -0.9 -0.9 hypothetical protein compare
Pf6N2E2_4128 -0.9 -2.1 hypothetical protein compare
Pf6N2E2_734 -0.9 -2.1 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_2693 -0.9 -1.2 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_2831 -0.9 -2.3 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) compare
Pf6N2E2_2041 -0.9 -1.2 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) compare
Pf6N2E2_4797 -0.9 -1.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_3516 -0.9 -1.1 Probable transmembrane protein compare
Pf6N2E2_413 -0.9 -1.5 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf6N2E2_1762 -0.9 -1.7 putative lipase compare
Pf6N2E2_2449 -0.9 -3.1 FIG074102: hypothetical protein compare
Pf6N2E2_5173 -0.9 -2.5 Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C) compare
Pf6N2E2_5316 -0.9 -1.3 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_1136 -0.9 -1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_945 -0.9 -1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_1606 -0.9 -2.6 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_3723 -0.9 -2.4 FIG022199: FAD-binding protein compare
Pf6N2E2_5430 -0.9 -4.0 Transglycosylase, Slt family compare
Pf6N2E2_4661 -0.9 -2.1 KluA regulatory protein compare
Pf6N2E2_2444 -0.8 -1.4 Glutathione peroxidase family protein compare
Pf6N2E2_5921 -0.8 -3.3 Metal-dependent hydrolase related to alanyl-tRNA synthetase compare
Pf6N2E2_1643 -0.8 -4.5 Trehalase (EC 3.2.1.28); Periplasmic trehalase precursor (EC 3.2.1.28) compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source D-Trehalose dihydrate in Pseudomonas fluorescens FW300-N2E2

For carbon source D-Trehalose dihydrate across organisms