Experiment set8IT045 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Xylemvessel barcodes T1L3P4

200 most important genes:

  gene name fitness t score description  
Xcc-8004.4200.1 -4.8 -3.3 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.2011.1 -4.2 -3.4 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.957.1 -3.7 -6.0 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.4752.1 -3.6 -2.5 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.3875.1 -3.5 -1.7 FIG01212144: hypothetical protein compare
Xcc-8004.4738.1 -3.4 -12.0 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.2387.1 -3.4 -4.0 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.4241.1 -3.3 -3.2 cytidine and deoxycytidylate deaminase family protein compare
Xcc-8004.4026.1 -3.2 -5.7 FIG01209666: hypothetical protein compare
Xcc-8004.4025.1 -3.2 -11.6 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.659.1 -3.2 -2.2 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.3710.1 -3.1 -1.9 hypothetical protein compare
Xcc-8004.4620.1 -2.9 -8.1 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.1009.1 -2.9 -3.3 Lysophospholipase L1 and related esterases compare
Xcc-8004.2922.1 -2.7 -1.8 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.4844.1 -2.7 -1.3 FIG01210764: hypothetical protein compare
Xcc-8004.3395.1 -2.5 -2.9 Transcriptional regulator, GntR family compare
Xcc-8004.1359.1 -2.5 -5.6 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.3979.1 -2.4 -8.1 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.601.1 -2.4 -8.0 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.1660.1 -2.4 -1.1 PTS system nitrogen-specific IIA component, PtsN compare
Xcc-8004.4493.1 -2.3 -3.4 sugar translocase compare
Xcc-8004.4824.1 -2.3 -8.9 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.1763.1 -2.2 -4.8 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.3054.1 -2.2 -2.1 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.2561.1 -2.2 -7.8 FIG01213638: hypothetical protein compare
Xcc-8004.1871.1 -2.1 -3.5 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.2074.1 -2.1 -5.1 Transcriptional regulator, MerR family compare
Xcc-8004.4112.1 -2.1 -3.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.4527.1 -2.0 -8.6 ATP-dependent RNA helicase RhlE compare
Xcc-8004.94.1 -2.0 -1.3 Transcriptional regulator, LuxR family compare
Xcc-8004.3322.1 -2.0 -1.6 FIG01211446: hypothetical protein compare
Xcc-8004.4327.1 -1.9 -1.1 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2620.1 -1.9 -8.0 NfuA Fe-S protein maturation compare
Xcc-8004.4806.1 -1.9 -2.2 FIG01211609: hypothetical protein compare
Xcc-8004.3049.1 -1.9 -6.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.2168.1 -1.9 -4.2 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Xcc-8004.3595.1 -1.9 -1.8 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Xcc-8004.5122.1 -1.8 -2.0 hypothetical protein compare
Xcc-8004.3310.1 -1.8 -4.4 Chromosome partition protein smc compare
Xcc-8004.4481.1 -1.8 -5.0 hypothetical protein compare
Xcc-8004.2086.1 -1.8 -1.4 Xanthan biosynthesis glycosyltransferase GumH compare
Xcc-8004.5343.1 -1.8 -6.1 hypothetical protein compare
Xcc-8004.4633.1 -1.8 -2.2 FIG01210488: hypothetical protein compare
Xcc-8004.1809.1 -1.7 -1.8 extracellular serine protease compare
Xcc-8004.318.1 -1.7 -5.0 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.4737.1 -1.7 -2.8 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.2217.1 -1.7 -2.9 FIG01209779: hypothetical protein compare
Xcc-8004.3676.1 -1.7 -2.7 Translation elongation factor LepA compare
Xcc-8004.4739.1 -1.6 -2.8 Lipid A core - O-antigen ligase and related enzymes compare
Xcc-8004.1677.1 -1.6 -3.2 FIG01209993: hypothetical protein compare
Xcc-8004.5326.1 -1.6 -1.3 Mobile element protein compare
Xcc-8004.623.1 -1.6 -1.9 Phosphoserine phosphatase compare
Xcc-8004.3324.1 -1.6 -3.9 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.3346.1 -1.6 -3.5 hypothetical protein compare
Xcc-8004.4789.1 -1.6 -4.0 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Xcc-8004.3459.1 -1.6 -2.3 FIG01212836: hypothetical protein compare
Xcc-8004.2552.1 -1.6 -2.6 Mobile element protein compare
Xcc-8004.1244.1 -1.6 -6.7 Fructose-bisphosphate aldolase class I (EC 4.1.2.13) compare
Xcc-8004.2579.1 -1.6 -2.6 Transcriptional regulator in PFGI-1-like cluster compare
Xcc-8004.4596.1 -1.5 -6.0 hypothetical protein compare
Xcc-8004.319.1 -1.5 -7.8 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Xcc-8004.2690.1 -1.5 -3.2 hypothetical protein compare
Xcc-8004.2259.1 -1.5 -4.7 PhbF compare
Xcc-8004.4951.1 -1.5 -2.3 FIG01210986: hypothetical protein compare
Xcc-8004.5367.1 -1.5 -5.3 Uncharacterized ABC transporter, auxiliary component YrbC compare
Xcc-8004.130.1 -1.5 -5.2 hypothetical protein compare
Xcc-8004.2529.1 -1.4 -2.9 FIG01210734: hypothetical protein compare
Xcc-8004.1437.1 -1.4 -4.7 Kup system potassium uptake protein compare
Xcc-8004.3244.1 -1.4 -1.7 DNA repair protein RadC compare
Xcc-8004.1841.1 -1.4 -2.0 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) compare
Xcc-8004.465.1 -1.4 -2.2 Transcriptional regulator PobR, AraC family compare
Xcc-8004.2477.1 -1.4 -6.4 Excinuclease ABC subunit C compare
Xcc-8004.482.1 -1.4 -3.4 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Xcc-8004.3862.1 -1.4 -4.8 Septum site-determining protein MinC compare
Xcc-8004.5352.1 -1.4 -2.3 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Xcc-8004.2034.1 -1.4 -8.7 Excinuclease ABC subunit B compare
Xcc-8004.1221.1 -1.4 -2.7 Ribonuclease PH (EC 2.7.7.56) compare
Xcc-8004.2012.1 -1.4 -4.1 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.2274.1 -1.4 -3.9 ATP-dependent 23S rRNA helicase DbpA compare
Xcc-8004.2911.1 -1.4 -1.4 Transcription elongation factor GreA compare
Xcc-8004.3830.1 -1.4 -8.1 Excinuclease ABC subunit A compare
Xcc-8004.1416.1 -1.4 -2.6 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Xcc-8004.4168.1 -1.3 -3.5 GTP-binding and nucleic acid-binding protein YchF compare
Xcc-8004.1204.1 -1.3 -2.7 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Xcc-8004.4836.1 -1.3 -4.1 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.1526.1 -1.3 -7.3 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) compare
Xcc-8004.1768.1 -1.3 -1.3 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Xcc-8004.1000.1 -1.3 -2.7 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.5202.1 -1.3 -3.7 Twin-arginine translocation protein TatC compare
Xcc-8004.1196.1 -1.3 -5.0 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Xcc-8004.846.1 -1.3 -1.8 Protein of unknown function DUF484 compare
Xcc-8004.3754.1 -1.3 -1.5 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) compare
Xcc-8004.2346.1 -1.3 -1.6 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.2627.1 -1.3 -2.5 Phi-Lf prophage-derived helix-destabilizing protein compare
Xcc-8004.2449.1 -1.3 -3.2 Glucokinase (EC 2.7.1.2) compare
Xcc-8004.3103.1 -1.3 -1.0 hypothetical protein compare
Xcc-8004.1097.1 -1.3 -1.5 FIG01210707: hypothetical protein compare
Xcc-8004.5114.1 -1.3 -4.6 ATP-dependent DNA helicase UvrD/PcrA compare
Xcc-8004.1014.1 -1.3 -2.6 FIG01210031: hypothetical protein compare
Xcc-8004.461.1 -1.3 -2.1 Transcriptional regulator, MarR family compare
Xcc-8004.1409.1 -1.2 -2.6 Cation:proton antiporter compare
Xcc-8004.574.1 -1.2 -5.0 Di-/tripeptide transporter compare
Xcc-8004.3108.1 -1.2 -2.2 Regulatory protein RecX compare
Xcc-8004.1911.1 -1.2 -3.4 hypothetical protein compare
Xcc-8004.1372.1 -1.2 -3.2 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.5363.1 -1.2 -2.2 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Xcc-8004.4000.1 -1.2 -2.2 COG1399 protein, clustered with ribosomal protein L32p compare
Xcc-8004.3965.1 -1.2 -3.3 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) compare
Xcc-8004.3130.1 -1.2 -4.8 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Xcc-8004.5052.1 -1.2 -1.7 FIG01209941: hypothetical protein compare
Xcc-8004.2239.1 -1.2 -1.9 Positive regulator of CheA protein activity (CheW) compare
Xcc-8004.2277.1 -1.2 -4.0 FIG01211504: hypothetical protein compare
Xcc-8004.3330.1 -1.2 -2.8 FIG01212834: hypothetical protein compare
Xcc-8004.3816.1 -1.2 -5.1 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.2574.1 -1.1 -2.2 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Xcc-8004.2182.1 -1.1 -6.6 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.2920.1 -1.1 -3.8 Ferrous iron transport protein B compare
Xcc-8004.778.1 -1.1 -1.9 FIG01214273: hypothetical protein compare
Xcc-8004.2228.1 -1.1 -3.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Xcc-8004.1023.1 -1.1 -3.6 Phosphate-specific outer membrane porin OprP ; Pyrophosphate-specific outer membrane porin OprO compare
Xcc-8004.1619.1 -1.1 -1.9 PspA/IM30 family protein compare
Xcc-8004.914.1 -1.1 -4.8 tail-specific protease compare
Xcc-8004.2229.1 -1.1 -5.3 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Xcc-8004.2741.1 -1.1 -3.1 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.438.1 -1.1 -3.1 hypothetical protein compare
Xcc-8004.1702.1 -1.1 -4.7 Proteins containing SET domain compare
Xcc-8004.936.1 -1.1 -2.0 FIG01209778: hypothetical protein compare
Xcc-8004.2672.1 -1.1 -1.7 hypothetical protein compare
Xcc-8004.471.1 -1.1 -3.3 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Xcc-8004.622.1 -1.1 -2.8 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Xcc-8004.3394.1 -1.1 -1.9 hypothetical protein compare
Xcc-8004.4259.1 -1.1 -2.1 Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) compare
Xcc-8004.3881.1 -1.1 -1.9 hypothetical protein compare
Xcc-8004.5407.1 -1.1 -1.7 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
Xcc-8004.4254.1 -1.1 -1.6 Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8) compare
Xcc-8004.821.1 -1.1 -2.9 Sulfate permease compare
Xcc-8004.788.1 -1.1 -1.3 Serine peptidase compare
Xcc-8004.951.1 -1.0 -1.2 General secretion pathway protein M compare
Xcc-8004.1954.1 -1.0 -2.5 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.589.1 -1.0 -1.7 hypothetical protein compare
Xcc-8004.2130.1 -1.0 -2.4 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) compare
Xcc-8004.3981.1 -1.0 -3.3 Methylisocitrate lyase (EC 4.1.3.30) compare
Xcc-8004.1511.1 -1.0 -1.0 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.117.1 -1.0 -2.0 FIG042594: DUF1550 domain-containing protein compare
Xcc-8004.3976.1 -1.0 -2.8 2-methylaconitate cis-trans isomerase compare
Xcc-8004.1133.1 -1.0 -1.3 Rubredoxin compare
Xcc-8004.618.1 -1.0 -2.7 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Xcc-8004.3370.1 -1.0 -5.3 3'-to-5' exoribonuclease RNase R compare
Xcc-8004.3120.1 -1.0 -2.1 RNA-binding protein Hfq compare
Xcc-8004.1495.1 -1.0 -1.3 FIG01212489: hypothetical protein compare
Xcc-8004.4428.1 -1.0 -1.7 General secretion pathway protein I compare
Xcc-8004.1336.1 -1.0 -4.0 two-component system sensor protein compare
Xcc-8004.3742.1 -1.0 -1.5 Type III effector compare
Xcc-8004.337.1 -1.0 -1.7 ATPase, AFG1 family compare
Xcc-8004.1615.1 -1.0 -0.6 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.5253.1 -1.0 -0.8 hypothetical protein compare
Xcc-8004.2358.1 -1.0 -3.7 Segregation and condensation protein A compare
Xcc-8004.3281.1 -1.0 -3.2 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.3647.1 -1.0 -2.1 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.2212.1 -1.0 -2.1 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Xcc-8004.1961.1 -1.0 -0.7 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Xcc-8004.3863.1 -1.0 -2.3 Septum site-determining protein MinD compare
Xcc-8004.2921.1 -1.0 -1.6 ferrous iron transport protein compare
Xcc-8004.1790.1 -1.0 -1.3 Zinc uptake regulation protein ZUR compare
Xcc-8004.5133.1 -0.9 -1.3 FIG01212313: hypothetical protein compare
Xcc-8004.3980.1 -0.9 -2.5 2-methylcitrate synthase (EC 2.3.3.5) compare
Xcc-8004.4921.1 -0.9 -1.1 FIG01213962: hypothetical protein compare
Xcc-8004.5398.1 -0.9 -2.2 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) compare
Xcc-8004.1436.1 -0.9 -1.2 Holliday junction DNA helicase RuvA compare
Xcc-8004.2421.1 -0.9 -6.4 Polyhydroxyalkanoic acid synthase compare
Xcc-8004.1889.1 -0.9 -1.7 hypothetical protein compare
Xcc-8004.2260.1 -0.9 -2.6 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
Xcc-8004.1831.1 -0.9 -2.6 FIG01211728: hypothetical protein compare
Xcc-8004.4510.1 -0.9 -1.0 ATP binding component of ABC-transporter compare
Xcc-8004.401.1 -0.9 -1.0 FMN reductase (EC 1.5.1.29) compare
Xcc-8004.4465.1 -0.9 -2.7 ABC transporter ATP-binding protein USSDB6B compare
Xcc-8004.2565.1 -0.9 -1.9 hypothetical protein compare
Xcc-8004.3522.1 -0.9 -2.6 FIG01212902: hypothetical protein compare
Xcc-8004.4539.1 -0.9 -4.0 Oligopeptidase A (EC 3.4.24.70) compare
Xcc-8004.2294.1 -0.9 -1.7 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Xcc-8004.2343.1 -0.9 -1.4 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.812.1 -0.9 -1.7 histidine kinase-response regulator hybrid protein compare
Xcc-8004.4100.1 -0.9 -1.4 hypothetical protein compare
Xcc-8004.1316.1 -0.9 -1.5 hypothetical protein compare
Xcc-8004.2383.1 -0.9 -2.6 FIG01211288: hypothetical protein compare
Xcc-8004.107.1 -0.9 -2.6 AtsE compare
Xcc-8004.5020.1 -0.9 -2.9 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Xcc-8004.1650.1 -0.9 -2.3 amino acid transporter compare
Xcc-8004.3982.1 -0.9 -3.6 Propionate catabolism operon regulatory protein PrpR compare
Xcc-8004.2662.1 -0.9 -1.8 probable membrane protein YPO3302 compare
Xcc-8004.4313.1 -0.9 -1.6 hypothetical protein compare
Xcc-8004.998.1 -0.8 -0.8 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1955.1 -0.8 -3.3 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.1007.1 -0.8 -0.6 acetylxylan esterase compare
Xcc-8004.127.1 -0.8 -1.1 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.3978.1 -0.8 -1.6 FIG01211989: hypothetical protein compare
Xcc-8004.2537.1 -0.8 -1.8 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Xcc-8004.27.1 -0.8 -0.9 hypothetical protein compare
Xcc-8004.3155.1 -0.8 -2.3 Phosphate transport regulator (distant homolog of PhoU) compare


Specific Phenotypes

For 4 genes in this experiment

For in planta xylem Plant=Cauliflower; Treatment=None; Sample=xylem; Collection=Direct; Time=1_days in Xanthomonas campestris pv. campestris strain 8004

For in planta xylem Plant=Cauliflower; Treatment=None; Sample=xylem; Collection=Direct; Time=1_days across organisms