Experiment set8IT045 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS20750 +1.2 2.4 carboxysome structural protein EutK compare
BWI76_RS12870 +1.1 4.1 putative phytanoyl-CoA dioxygenase compare
BWI76_RS09560 +1.1 3.3 DoxX family membrane protein compare
BWI76_RS09635 +1.1 1.9 amino acid ABC transporter ATP-binding protein compare
BWI76_RS11060 +1.0 2.5 septum formation inhibitor Maf compare
BWI76_RS18605 +1.0 2.7 oxidoreductase molybdopterin-binding protein compare
BWI76_RS18770 +0.9 1.9 DNA gyrase inhibitor compare
BWI76_RS15740 +0.9 1.6 HNH endonuclease compare
BWI76_RS13775 +0.9 2.3 putative FMN-dependent luciferase-like monooxygenase compare
BWI76_RS15095 +0.9 3.0 isochorismatase compare
BWI76_RS13590 +0.8 2.5 hypothetical protein compare
BWI76_RS09390 +0.8 2.3 phage tail protein compare
BWI76_RS21375 +0.8 1.5 autonomous glycyl radical cofactor GrcA compare
BWI76_RS12695 +0.8 4.2 zinc transporter ZntB compare
BWI76_RS05260 +0.8 2.0 chaperone compare
BWI76_RS27875 +0.8 1.3 membrane protein compare
BWI76_RS08535 +0.8 2.4 translocation protein TolB compare
BWI76_RS08380 +0.8 1.9 endonuclease VIII compare
BWI76_RS20145 +0.8 2.0 NADH-quinone oxidoreductase subunit K compare
BWI76_RS14460 +0.8 3.2 MurR/RpiR family transcriptional regulator compare
BWI76_RS00565 +0.8 2.0 branched-chain amino acid transport compare
BWI76_RS01065 +0.8 4.0 ATP-dependent RNA helicase RhlB compare
BWI76_RS01885 +0.7 1.6 CsbD family protein compare
BWI76_RS08210 +0.7 2.7 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS15825 +0.7 1.7 hypothetical protein compare
BWI76_RS13380 +0.7 1.4 hypothetical protein compare
BWI76_RS11635 +0.7 1.3 ABC transporter compare
BWI76_RS21325 +0.7 1.2 hypothetical protein compare
BWI76_RS11250 +0.7 2.4 spermidine/putrescine ABC transporter permease PotB compare
BWI76_RS07985 +0.7 1.2 fluoride ion transporter CrcB compare
BWI76_RS08780 +0.7 2.4 ABC transporter compare
BWI76_RS12070 +0.7 1.2 hypothetical protein compare
BWI76_RS03180 +0.7 1.7 phage transcriptional regulator, AlpA compare
BWI76_RS09315 +0.6 1.3 hypothetical protein compare
BWI76_RS27425 +0.6 2.1 DNA-directed RNA polymerase subunit omega compare
BWI76_RS11235 +0.6 1.3 hypothetical protein compare
BWI76_RS12985 +0.6 1.6 transcriptional regulator compare
BWI76_RS11190 +0.6 2.1 putative TetR/AcrR family transcriptional regulatory protein compare
BWI76_RS19310 +0.6 1.7 ABC transporter permease compare
BWI76_RS14615 +0.6 1.3 hypothetical protein compare
BWI76_RS16195 +0.6 1.6 hypothetical protein compare
BWI76_RS06930 +0.6 3.7 iron export ABC transporter permease subunit FetB compare
BWI76_RS02940 +0.6 3.3 RpiR family transcriptional regulator compare
BWI76_RS16230 +0.6 2.5 dihydromonapterin reductase compare
BWI76_RS15620 +0.6 1.6 hypothetical protein compare
BWI76_RS20180 +0.6 3.4 NADH-quinone oxidoreductase subunit C/D compare
BWI76_RS16025 +0.6 2.0 triphosphoribosyl-dephospho-CoA synthase compare
BWI76_RS08530 +0.6 2.3 protein TolA compare
BWI76_RS03295 +0.6 1.4 transposase compare
BWI76_RS14845 +0.6 2.2 hypothetical protein compare
BWI76_RS01585 +0.6 2.5 transcriptional regulator compare
BWI76_RS11790 +0.6 2.2 acyl-CoA thioesterase compare
BWI76_RS02680 +0.6 1.2 EamA family transporter compare
BWI76_RS06130 +0.6 1.2 extensin family protein compare
BWI76_RS26105 +0.6 2.7 hypothetical protein compare
BWI76_RS26245 +0.6 2.0 transcriptional regulator compare
BWI76_RS22815 +0.6 4.6 hybrid sensor histidine kinase/response regulator compare
BWI76_RS17645 +0.6 2.0 hypothetical protein compare
BWI76_RS15235 +0.6 1.6 hypothetical protein compare
BWI76_RS09085 +0.6 3.8 molybdopterin molybdenumtransferase MoeA compare
BWI76_RS23895 +0.6 0.9 Xaa-Pro aminopeptidase compare
BWI76_RS26455 +0.6 2.9 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS19750 +0.6 1.9 elongation factor P-like protein YeiP compare
BWI76_RS27865 +0.6 1.5 hypothetical protein compare
BWI76_RS20160 +0.6 2.6 NADH-quinone oxidoreductase subunit H compare
BWI76_RS13335 +0.5 2.7 peptidase T compare
BWI76_RS18335 +0.5 4.3 DNA-binding response regulator compare
BWI76_RS08825 +0.5 1.7 cyclic pyranopterin monophosphate synthase MoaC compare
BWI76_RS02635 +0.5 1.7 3-keto-L-gulonate-6-phosphate decarboxylase compare
BWI76_RS11605 +0.5 3.1 DNA topoisomerase III compare
BWI76_RS12555 +0.5 2.6 hypothetical protein compare
BWI76_RS01125 +0.5 3.3 4-alpha-L-fucosyltransferase compare
BWI76_RS17230 +0.5 1.8 peptide ABC transporter permease compare
BWI76_RS16300 +0.5 2.4 bifunctional beta-cystathionase/maltose regulon regulatory protein compare
BWI76_RS23390 +0.5 2.2 oligogalacturonide ABC transporter ATP-binding protein compare
BWI76_RS19460 +0.5 1.0 lipoprotein compare
BWI76_RS11245 +0.5 1.6 spermidine/putrescine ABC transporter permease PotC compare
BWI76_RS14665 +0.5 1.3 minor fimbrial subunit YfcQ compare
BWI76_RS15285 +0.5 1.4 stress protection protein MarC compare
BWI76_RS09725 +0.5 2.3 MurR/RpiR family transcriptional regulator compare
BWI76_RS20150 +0.5 0.8 NADH:ubiquinone oxidoreductase subunit J compare
BWI76_RS24270 +0.5 1.0 membrane protein compare
BWI76_RS06925 +0.5 3.9 iron ABC transporter ATP-binding protein FetA compare
BWI76_RS08495 +0.5 2.3 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS05075 +0.5 0.8 type II secretion system protein GspG compare
BWI76_RS01190 +0.5 2.0 iron donor protein CyaY compare
BWI76_RS11150 +0.5 0.9 membrane protein compare
BWI76_RS18410 +0.5 2.2 drug/metabolite exporter YedA compare
BWI76_RS27610 +0.5 2.3 hydroxyacid dehydrogenase compare
BWI76_RS09305 +0.5 1.2 hypothetical protein compare
BWI76_RS21740 +0.5 1.5 transcriptional regulator, LysR family protein compare
BWI76_RS17300 +0.5 0.9 tRNA-Tyr compare
BWI76_RS11440 +0.5 0.9 hypothetical protein compare
BWI76_RS15665 +0.5 1.7 hypothetical protein compare
BWI76_RS11125 +0.5 1.1 metal-dependent hydrolase compare
BWI76_RS23015 +0.5 1.2 cobalt transporter ATP-binding subunit compare
BWI76_RS17770 +0.5 1.3 isomerase/hydrolase compare
BWI76_RS16920 +0.5 0.9 3-(2,3-dihydroxyphenyl)propionate dioxygenase compare
BWI76_RS01120 +0.5 2.3 O-antigen translocase compare
BWI76_RS09295 +0.5 1.4 hypothetical protein compare
BWI76_RS06540 +0.5 2.0 DNA-binding protein HU-beta compare
BWI76_RS12500 +0.5 2.7 dipeptide epimerase compare
BWI76_RS21235 +0.5 1.0 hypothetical protein compare
BWI76_RS17330 +0.5 2.6 nitrate reductase subunit beta compare
BWI76_RS20610 +0.5 2.0 LysR family transcriptional regulator compare
BWI76_RS13980 +0.5 0.9 hypothetical protein compare
BWI76_RS11335 +0.5 0.9 tautomerase compare
BWI76_RS20840 +0.5 3.0 hypothetical protein compare
BWI76_RS26630 +0.5 2.7 pimeloyl-[acyl-carrier protein] methyl ester esterase compare
BWI76_RS17025 +0.5 2.0 putative major type 1 subunit fimbrin compare
BWI76_RS12050 +0.5 1.4 hypothetical protein compare
BWI76_RS24745 +0.5 2.6 membrane protein compare
BWI76_RS16765 +0.5 2.7 spermidine/putrescine ABC transporter permease compare
BWI76_RS27430 +0.5 0.5 (p)ppGpp synthetase compare
BWI76_RS12865 +0.4 1.8 acetylornithine deacetylase compare
BWI76_RS16315 +0.4 0.9 SirA-like protein compare
BWI76_RS21715 +0.4 1.6 transcriptional regulator compare
BWI76_RS13970 +0.4 1.2 ABC transporter compare
BWI76_RS21075 +0.4 1.0 membrane protein compare
BWI76_RS14740 +0.4 1.5 LysR family transcriptional regulator compare
BWI76_RS12640 +0.4 1.6 hypothetical protein compare
BWI76_RS09940 +0.4 1.4 paraquat-inducible protein B compare
BWI76_RS08020 +0.4 2.0 serine-type D-Ala-D-Ala carboxypeptidase compare
BWI76_RS10935 +0.4 1.7 glucan biosynthesis glucosyltransferase H compare
BWI76_RS20165 +0.4 1.5 NADH-quinone oxidoreductase subunit G compare
BWI76_RS08820 +0.4 1.7 molybdenum cofactor biosynthesis protein compare
BWI76_RS13360 +0.4 1.8 benzoate transporter compare
BWI76_RS08755 +0.4 1.8 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
BWI76_RS20065 +0.4 2.7 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
BWI76_RS09570 +0.4 2.9 hydroxylamine reductase compare
BWI76_RS26405 +0.4 0.8 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS26235 +0.4 1.9 gluconate transporter compare
BWI76_RS25545 +0.4 0.8 hypothetical protein compare
BWI76_RS19650 +0.4 1.6 DNA-binding transcriptional regulator GalS compare
BWI76_RS15190 +0.4 2.3 GGDEF domain-containing protein compare
BWI76_RS17720 +0.4 0.5 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS09720 +0.4 2.3 PTS ascorbate transporter subunit IIB compare
BWI76_RS21485 +0.4 3.1 DUF4154 domain-containing protein compare
BWI76_RS11350 +0.4 2.4 DeoR family transcriptional regulator compare
BWI76_RS13215 +0.4 0.9 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS24740 +0.4 1.9 GntR family transcriptional regulator compare
BWI76_RS15930 +0.4 1.1 dimethylsulfoxide reductase, chain B compare
BWI76_RS16015 +0.4 1.0 pheromone autoinducer 2 transporter compare
BWI76_RS06335 +0.4 1.1 nucleoside-specific channel-forming protein Tsx compare
BWI76_RS17665 +0.4 1.5 proteasome-type protease compare
BWI76_RS23470 +0.4 3.6 hypothetical protein compare
BWI76_RS26215 +0.4 2.5 glycogen-branching enzyme compare
BWI76_RS19770 +0.4 0.9 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS07705 +0.4 0.9 enterochelin esterase compare
BWI76_RS23255 +0.4 1.9 prepilin-type cleavage/methylation domain-containing protein compare
BWI76_RS26290 +0.4 2.0 glycerol-3-phosphate ABC transporter ATP-binding protein compare
BWI76_RS17325 +0.4 1.9 nitrate reductase molybdenum cofactor assembly chaperone compare
BWI76_RS26015 +0.4 1.5 DUF2559 domain-containing protein compare
BWI76_RS12125 +0.4 0.5 hypothetical protein compare
BWI76_RS14230 +0.4 2.2 flavin monoamine oxidase family protein compare
BWI76_RS09165 +0.4 1.5 phosphatase YbjI compare
BWI76_RS20025 +0.4 2.1 HAMP domain-containing histidine kinase compare
BWI76_RS23005 +0.4 1.6 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS18565 +0.4 1.4 pemk protein compare
BWI76_RS13480 +0.4 0.9 XRE family transcriptional regulator compare
BWI76_RS00330 +0.4 2.6 molybdenum cofactor guanylyltransferase compare
BWI76_RS13660 +0.4 2.2 nitrate reductase subunit beta compare
BWI76_RS08390 +0.4 1.7 hypothetical protein compare
BWI76_RS16425 +0.4 1.5 hypothetical protein compare
BWI76_RS22625 +0.4 1.0 transcriptional regulator compare
BWI76_RS26460 +0.4 2.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS09055 +0.4 1.4 LacI family transcriptional regulator compare
BWI76_RS08330 +0.4 0.8 hypothetical protein compare
BWI76_RS11970 +0.4 2.3 stress response translation initiation inhibitor YciH compare
BWI76_RS08835 +0.4 2.1 molybdopterin guanine dinucleotide biosynthesis protein MoaE compare
BWI76_RS07680 +0.4 2.1 transketolase compare
BWI76_RS23575 +0.4 1.7 hypothetical protein compare
BWI76_RS17210 +0.4 1.9 dsDNA-mimic protein compare
BWI76_RS09025 +0.4 1.3 GntR family transcriptional regulator compare
BWI76_RS14015 +0.4 1.5 L-2,4-diaminobutyrate decarboxylase compare
BWI76_RS19275 +0.4 2.4 DNA-binding response regulator compare
BWI76_RS11685 +0.4 2.3 Succinylarginine dihydrolase (EC 3.5.3.23) (from data) compare
BWI76_RS00645 +0.4 2.0 lactaldehyde reductase compare
BWI76_RS18200 +0.4 1.6 copper homeostasis protein CutC compare
BWI76_RS12575 +0.4 2.4 FAD-dependent oxidoreductase compare
BWI76_RS20915 +0.4 2.6 peroxiredoxin compare
BWI76_RS26440 +0.4 0.9 hypothetical protein compare
BWI76_RS19470 +0.4 1.2 DNA-binding response regulator compare
BWI76_RS07615 +0.4 1.5 betaine-aldehyde dehydrogenase compare
BWI76_RS14110 +0.4 1.3 C-lysozyme inhibitor compare
BWI76_RS20945 +0.4 1.6 uracil phosphoribosyltransferase compare
BWI76_RS18550 +0.4 0.9 tRNA-Asn compare
BWI76_RS17075 +0.4 1.4 3-deoxy-7-phosphoheptulonate synthase compare
BWI76_RS09010 +0.4 2.5 anion transporter compare
BWI76_RS15975 +0.4 0.6 hypothetical protein compare
BWI76_RS04840 +0.4 2.0 prepilin peptidase-dependent pilin compare
BWI76_RS22100 +0.4 2.0 multidrug effux MFS transporter subunit EmrB compare
BWI76_RS16190 +0.4 1.2 universal stress protein UspE compare
BWI76_RS10835 +0.4 0.8 hypothetical protein compare
BWI76_RS10900 +0.4 1.5 putative oxidoreductase compare
BWI76_RS07640 +0.4 0.9 short chain dehydrogenase compare
BWI76_RS19520 +0.4 1.5 acetyltransferase GCN5 compare
BWI76_RS20135 +0.4 2.0 NADH-quinone oxidoreductase subunit M compare
BWI76_RS02885 +0.4 1.3 dihydroorotase compare
BWI76_RS15920 +0.4 0.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms