Experiment set8IT044 for Pseudomonas syringae pv. syringae B728a

Compare to:

library passed through aphids in food, 24 hours

200 most important genes:

  gene name fitness t score description  
Psyr_1269 -3.0 -6.1 phosphoribosylformylglycinamidine synthase compare
Psyr_4270 -2.8 -8.9 serine hydroxymethyltransferase compare
Psyr_1668 -2.7 -7.4 amidophosphoribosyltransferase compare
Psyr_4407 -2.1 -2.7 phosphoribosylamine--glycine ligase compare
Psyr_3473 -1.9 -5.1 Flagellar P-ring protein compare
Psyr_3445 -1.8 -6.8 Flagellar biosynthesis protein, FliO compare
Psyr_3453 -1.8 -7.0 flagellar protein FliJ, putative compare
Psyr_3446 -1.7 -2.9 Surface presentation of antigens (SPOA) protein compare
Psyr_0255 -1.7 -2.5 glutamate-cysteine ligase compare
Psyr_3489 -1.7 -4.6 FlgN compare
Psyr_3690 -1.6 -5.4 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase compare
Psyr_3463 -1.6 -4.2 Flagellar protein FliS compare
Psyr_3439 -1.6 -5.4 GTP-binding signal recognition particle SRP54, G-domain protein compare
Psyr_0377 -1.6 -6.3 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_0378 -1.6 -6.8 Glycosyl transferase, family 2 compare
Psyr_3808 -1.5 -1.0 hypothetical protein compare
Psyr_3487 -1.5 -7.7 flagellar protein FlgA compare
Psyr_3464 -1.5 -9.9 Flagellar hook-associated protein 2, N-terminal:Flagellar hook-associated 2, C-terminal:Flagellin hook IN compare
Psyr_3456 -1.5 -9.0 Flagellar motor switch protein FliG compare
Psyr_3472 -1.5 -11.2 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase compare
Psyr_3474 -1.5 -10.1 Flagellar L-ring protein compare
Psyr_3443 -1.5 -6.5 Flagellar biosynthesis protein FliQ compare
Psyr_0014 -1.5 -5.0 lipid A biosynthesis acyltransferase compare
Psyr_1556 -1.5 -1.4 hypothetical protein compare
Psyr_0215 -1.5 -8.3 Exodeoxyribonuclease III xth compare
Psyr_3454 -1.4 -8.4 ATPase FliI/YscN compare
Psyr_3447 -1.4 -6.4 Flagellar motor switch protein FliM compare
Psyr_3893 -1.4 -8.2 OmpA/MotB compare
Psyr_3461 -1.4 -8.6 Helix-turn-helix, Fis-type compare
Psyr_3478 -1.4 -10.2 Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE compare
Psyr_3428 -1.4 -7.2 CheW-like protein compare
Psyr_0565 -1.4 -5.1 Protein of unknown function UPF0126 compare
Psyr_5135 -1.4 -2.5 Protein of unknown function DUF37 compare
Psyr_3470 -1.4 -10.0 Flagellin, N-terminal compare
Psyr_3481 -1.4 -5.0 Flagellar basal-body rod protein FlgB compare
Psyr_0487 -1.4 -3.8 glutathione synthase compare
Psyr_3475 -1.3 -4.0 Flagellar basal body rod protein:Protein of unknown function DUF1078 compare
Psyr_4194 -1.3 -3.4 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_3471 -1.3 -9.6 Flagellar basal body rod protein:Protein of unknown function DUF1078 compare
Psyr_0575 -1.3 -3.3 protease FtsH subunit HflC compare
Psyr_3437 -1.3 -9.1 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG compare
Psyr_4460 -1.3 -2.7 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_3462 -1.3 -2.3 conserved hypothetical protein compare
Psyr_3433 -1.3 -3.9 Protein-glutamate methylesterase compare
Psyr_4882 -1.3 -7.1 protein translocase subunit secB compare
Psyr_3441 -1.3 -9.3 Flagellar biosynthetic protein FlhB compare
Psyr_3431 -1.2 -5.6 OmpA/MotB compare
Psyr_3435 -1.2 -4.2 chemotaxis phosphatase, CheZ compare
Psyr_3480 -1.2 -3.6 Flagellar basal-body rod protein FlgC compare
Psyr_1910 -1.2 -4.2 VacJ-like lipoprotein compare
Psyr_0402 -1.2 -10.0 Peptidoglycan glycosyltransferase compare
Psyr_5133 -1.2 -3.8 tRNA modification GTPase trmE compare
Psyr_1678 -1.2 -1.9 Hypothetical protein compare
Psyr_3440 -1.2 -7.1 Flagellar biosynthesis protein FlhA compare
Psyr_3457 -1.2 -5.7 Flagellar FliF M-ring protein compare
Psyr_3485 -1.2 -5.7 MCP methyltransferase, CheR-type compare
Psyr_3434 -1.1 -4.6 CheW-like protein:ATP-binding region, ATPase-like:Signal transducing histidine kinase, homodimeric:Hpt compare
Psyr_4754 -1.1 -1.7 16S rRNA m(2)G-966 methyltransferase compare
Psyr_4567 -1.1 -4.6 Protein of unknown function UPF0075 compare
Psyr_4623 -1.1 -8.1 Aminoglycoside phosphotransferase compare
Psyr_3469 -1.1 -8.6 Glycosyl transferase, family 2 compare
Psyr_3013 -1.1 -1.7 magnesium chelatase subunit ChlD compare
Psyr_3436 -1.1 -5.8 Response regulator receiver compare
Psyr_3466 -1.1 -1.7 Flagellin, C-terminal:Flagellin, N-terminal compare
Psyr_1247 -1.1 -1.6 conserved hypothetical protein compare
Psyr_3455 -1.1 -3.9 Flagellar assembly protein FliH compare
Psyr_0574 -1.1 -3.6 protease FtsH subunit HflK compare
Psyr_4203 -1.0 -1.2 SsrA-binding protein compare
Psyr_1378 -1.0 -2.6 RecA protein compare
Psyr_2980 -1.0 -2.6 UDP-glucose pyrophosphorylase compare
Psyr_3458 -1.0 -1.9 Flagellar hook-basal body complex protein FliE compare
Psyr_3442 -1.0 -4.6 Flagellar biosynthesis protein FliR compare
Psyr_4417 -1.0 -2.3 Ferredoxin--nitrite reductase compare
Psyr_0268 -0.9 -1.5 DSBA oxidoreductase compare
Psyr_5132 -0.9 -1.7 Glucose-inhibited division protein A subfamily compare
Psyr_1373 -0.9 -2.0 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_1418 -0.9 -2.1 Radical SAM compare
Psyr_2285 -0.9 -2.1 Twin-arginine translocation pathway signal compare
Psyr_4622 -0.9 -3.7 Nucleotidyl transferase compare
Psyr_4078 -0.9 -6.9 AmpG-related permease compare
Psyr_4144 -0.9 -1.8 Protein of unknown function DUF1239 compare
Psyr_3020 -0.9 -1.5 precorrin-4 C11-methyltransferase compare
Psyr_0535 -0.9 -2.1 toluene tolerance protein, putative compare
Psyr_4473 -0.9 -4.5 OmpW compare
Psyr_2617 -0.9 -2.7 Secretion protein HlyD compare
Psyr_4158 -0.9 -5.7 conserved hypothetical protein compare
Psyr_3449 -0.9 -3.9 Flagellar hook-length control protein compare
Psyr_3476 -0.8 -1.6 Flagellar basal body rod protein:Protein of unknown function DUF1078 compare
Psyr_3479 -0.8 -2.4 Flagellar hook capping protein compare
Psyr_4115 -0.8 -1.9 phosphoheptose isomerase compare
Psyr_3432 -0.8 -2.6 MotA/TolQ/ExbB proton channel compare
Psyr_3198 -0.8 -1.7 NADH dehydrogenase subunit B compare
Psyr_2733 -0.8 -2.6 Short-chain dehydrogenase/reductase SDR compare
Psyr_3281 -0.8 -1.2 Glycoside hydrolase, family 3, N-terminal compare
Psyr_4141 -0.8 -2.9 ABC transporter compare
Psyr_0680 -0.8 -2.5 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
Psyr_1424 -0.8 -1.1 Peptidase S24, S26A and S26B compare
Psyr_5072 -0.8 -1.4 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_0849 -0.8 -3.0 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_4801 -0.8 -2.7 Outer membrane efflux protein compare
Psyr_3133 -0.7 -2.0 Amidohydrolase 2 compare
Psyr_1661 -0.7 -5.3 conserved hypothetical protein compare
Psyr_2897 -0.7 -3.6 regulatory protein, LuxR:Response regulator receiver compare
Psyr_4055 -0.7 -2.7 conserved domain protein compare
Psyr_1903 -0.7 -2.9 conserved hypothetical protein compare
Psyr_3555 -0.7 -1.9 aspartate kinase compare
Psyr_0395 -0.7 -3.0 HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B compare
Psyr_3680 -0.7 -2.7 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase compare
Psyr_2112 -0.7 -1.2 Protein with unknown function DUF469 compare
Psyr_0579 -0.7 -4.7 RNAse R compare
Psyr_2264 -0.7 -1.8 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_4490 -0.7 -1.5 transcriptional regulator, DeoR family compare
Psyr_5030 -0.7 -2.4 chorismate lyase compare
Psyr_1887 -0.7 -3.0 CDS compare
Psyr_3298 -0.7 -2.0 conserved hypothetical protein compare
Psyr_4420 -0.7 -2.6 precorrin-6A reductase compare
Psyr_4634 -0.7 -1.4 Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein compare
Psyr_2449 -0.7 -2.6 Response regulator receiver compare
Psyr_0561 -0.7 -4.8 chemotaxis motA protein compare
Psyr_3287 -0.7 -0.8 DNA topoisomerase I compare
Psyr_0562 -0.7 -3.9 OmpA/MotB compare
Psyr_4788 -0.7 -1.3 lipoprotein, putative compare
Psyr_4884 -0.7 -2.7 Rhodanese-like protein compare
Psyr_4408 -0.7 -4.1 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_2446 -0.7 -3.5 MCP methyltransferase, CheR-type compare
Psyr_4464 -0.7 -1.2 lipoprotein, putative compare
Psyr_4139 -0.7 -3.0 Mce4/Rv3499c/MTV023.06c protein compare
Psyr_2927 -0.7 -1.3 transcriptional regulator, TetR family compare
Psyr_4733 -0.7 -4.2 betaine aldehyde dehydrogenase compare
Psyr_3601 -0.7 -1.6 conserved hypothetical protein compare
Psyr_2084 -0.7 -2.5 transcriptional regulator, GntR family compare
Psyr_3448 -0.7 -3.2 Flagellar basal body-associated protein FliL compare
Psyr_2848 -0.6 -2.1 hypothetical protein compare
Psyr_1044 -0.6 -4.2 transcriptional regulator, LysR family compare
Psyr_1987 -0.6 -2.1 2-keto-3-deoxygalactonate kinase compare
Psyr_4831 -0.6 -3.0 ABC transporter compare
Psyr_1907 -0.6 -1.3 GTP cyclohydrolase I compare
Psyr_4118 -0.6 -3.3 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_1747 -0.6 -2.3 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_3676 -0.6 -2.7 adenosylcobyric acid synthase (glutamine-hydrolysing) compare
Psyr_0051 -0.6 -2.0 conserved hypothetical protein compare
Psyr_1633 -0.6 -1.5 MotA/TolQ/ExbB proton channel compare
Psyr_0291 -0.6 -3.7 DedA compare
Psyr_2117 -0.6 -1.7 conserved hypothetical protein compare
Psyr_2128 -0.6 -1.5 Protein of unknown function DUF6 compare
Psyr_0557 -0.6 -2.9 phosphoserine phosphatase compare
Psyr_0826 -0.6 -3.1 glucose-6-phosphate isomerase compare
Psyr_3199 -0.6 -1.7 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_3882 -0.6 -1.3 conserved hypothetical protein compare
Psyr_3460 -0.6 -2.9 PAS/PAC sensor signal transduction histidine kinase compare
Psyr_4140 -0.6 -1.6 Protein of unknown function DUF140 compare
Psyr_2456 -0.6 -1.1 Short-chain dehydrogenase/reductase SDR compare
Psyr_1613 -0.6 -0.8 septum site-determining protein MinC compare
Psyr_1408 -0.6 -1.1 Holliday junction endonuclease RuvC compare
Psyr_RNA61 -0.6 -1.7 tRNA-Gly compare
Psyr_1946 -0.6 -1.8 diaminobutyrate aminotransferase apoenzyme compare
Psyr_1374 -0.6 -3.8 RNA polymerase, sigma 38 subunit, RpoS compare
Psyr_5067 -0.6 -2.4 conserved hypothetical protein compare
Psyr_2362 -0.6 -2.5 Silent information regulator protein Sir2 compare
Psyr_2942 -0.6 -1.9 amino acid ABC transporter ATP-binding protein, PAAT family compare
Psyr_2245 -0.6 -1.0 conserved domain protein compare
Psyr_2578 -0.6 -1.6 regulatory protein, LuxR compare
Psyr_2553 -0.6 -2.4 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases-related enzyme compare
Psyr_4262 -0.6 -1.3 lipoprotein, putative compare
Psyr_0406 -0.5 -2.5 Pilus assembly protein, PilQ compare
Psyr_0278 -0.5 -3.5 ABC-3 compare
Psyr_3554 -0.5 -0.8 Carbon storage regulator compare
Psyr_2244 -0.5 -1.7 DNA topoisomerase III compare
Psyr_4451 -0.5 -1.4 UreE urease accessory, N-terminal:UreE urease accessory, C-terminal compare
Psyr_2151 -0.5 -1.4 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
Psyr_4138 -0.5 -2.2 Toluene tolerance compare
Psyr_2566 -0.5 -2.2 dihydroxyacetone kinase DhaK subunit compare
Psyr_1751 -0.5 -2.0 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_1797 -0.5 -2.2 conserved hypothetical protein compare
Psyr_2973 -0.5 -0.7 Glyoxalase I compare
Psyr_0835 -0.5 -2.6 transcriptional regulator, TraR/DksA family compare
Psyr_3262 -0.5 -1.0 dnaK suppressor protein, putative compare
Psyr_3620 -0.5 -1.2 hypothetical protein compare
Psyr_1198 -0.5 -1.2 type III secretion protein HrpF compare
Psyr_3691 -0.5 -2.9 conserved hypothetical protein compare
Psyr_0772 -0.5 -2.0 Protein of unknown function DUF1355 compare
Psyr_3698 -0.5 -2.5 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt compare
Psyr_1968 -0.5 -1.1 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_0410 -0.5 -3.7 conserved hypothetical protein compare
Psyr_4887 -0.5 -3.5 Peptidase S41A, C-terminal protease compare
Psyr_1816 -0.5 -1.8 transcriptional regulator, GntR family compare
Psyr_1832 -0.5 -0.7 Exonuclease compare
Psyr_2860 -0.5 -1.1 hypothetical protein compare
Psyr_3142 -0.5 -1.0 general secretion pathway protein N, putative compare
Psyr_0486 -0.5 -3.8 TonB, C-terminal compare
Psyr_3299 -0.5 -2.3 two component transcriptional regulator, LuxR family compare
Psyr_4414 -0.5 -2.3 precorrin-3 methyltransferase compare
Psyr_2823 -0.5 -0.7 hypothetical protein compare
Psyr_3644 -0.5 -1.4 prephenate dehydrogenase compare
Psyr_4498 -0.5 -1.2 outer membrane transport energization protein ExbD compare
Psyr_4833 -0.5 -1.5 histidine ammonia-lyase compare
Psyr_4403 -0.5 -2.9 conserved hypothetical protein compare
Psyr_2077 -0.5 -2.1 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_2184 -0.5 -1.7 Short-chain dehydrogenase/reductase SDR compare
Psyr_0493 -0.5 -1.8 CheW-like protein compare


Specific Phenotypes

For 16 genes in this experiment