Experiment set8IT044 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x

200 most important genes:

  gene name fitness t score description  
BWI76_RS20965 -10.0 -6.8 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS20355 -9.5 -6.5 colicin V production protein compare
BWI76_RS09755 -8.3 -5.7 phosphoserine transaminase compare
BWI76_RS20350 -8.3 -7.3 amidophosphoribosyltransferase compare
BWI76_RS18935 -8.0 -8.5 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS01655 -7.9 -8.9 homoserine O-succinyltransferase compare
BWI76_RS05840 -7.9 -5.4 glutamate 5-kinase compare
BWI76_RS18930 -7.8 -4.5 histidinol-phosphate transaminase compare
BWI76_RS07070 -7.7 -5.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS04255 -7.6 -10.4 threonine synthase compare
BWI76_RS00855 -7.5 -9.0 argininosuccinate lyase compare
BWI76_RS04470 -7.5 -10.3 carbamoyl phosphate synthase large subunit compare
BWI76_RS20895 -7.2 -7.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS01615 -7.2 -11.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS08385 -7.2 -4.3 citrate (Si)-synthase compare
BWI76_RS23360 -7.0 -4.9 diaminopimelate decarboxylase compare
BWI76_RS11850 -7.0 -11.4 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS09760 -7.0 -5.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS21265 -6.8 -14.6 phosphoribosylformylglycinamidine synthase compare
BWI76_RS00835 -6.8 -16.9 phosphoenolpyruvate carboxylase compare
BWI76_RS09645 -6.7 -2.9 thioredoxin-disulfide reductase compare
BWI76_RS04670 -6.7 -11.5 3-isopropylmalate dehydratase large subunit compare
BWI76_RS00980 -6.7 -13.6 PLP-dependent threonine dehydratase compare
BWI76_RS26085 -6.6 -4.6 3-dehydroquinate synthase compare
BWI76_RS18955 -6.6 -5.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS11860 -6.6 -10.0 anthranilate synthase component I compare
BWI76_RS04465 -6.5 -7.8 carbamoyl-phosphate synthase small subunit compare
BWI76_RS00850 -6.5 -11.4 acetylglutamate kinase compare
BWI76_RS04250 -6.5 -9.2 homoserine kinase compare
BWI76_RS04675 -6.3 -8.9 3-isopropylmalate dehydrogenase compare
BWI76_RS00990 -6.2 -11.2 ketol-acid reductoisomerase compare
BWI76_RS18920 -6.2 -5.9 ATP phosphoribosyltransferase compare
BWI76_RS04245 -6.2 -15.5 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS02995 -6.2 -10.3 aspartate carbamoyltransferase compare
BWI76_RS27385 -6.1 -7.5 orotate phosphoribosyltransferase compare
BWI76_RS13920 -6.1 -9.0 magnesium-translocating P-type ATPase compare
BWI76_RS18925 -6.0 -7.4 histidinol dehydrogenase compare
BWI76_RS23220 -6.0 -8.3 amino-acid N-acetyltransferase compare
BWI76_RS04510 -6.0 -4.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS03010 -5.9 -7.9 ornithine carbamoyltransferase compare
BWI76_RS04685 -5.9 -12.1 putative leucine operon leader peptide compare
BWI76_RS11965 -5.9 -4.9 orotidine-5'-phosphate decarboxylase compare
BWI76_RS07065 -5.9 -6.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS18940 -5.8 -5.7 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS00785 -5.7 -8.4 cystathionine gamma-synthase compare
BWI76_RS00965 -5.7 -2.4 acetolactate synthase 2 small subunit compare
BWI76_RS00805 -5.6 -5.2 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS23365 -5.6 -8.6 LysR family transcriptional regulator compare
BWI76_RS00845 -5.6 -8.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS25115 -5.6 -8.4 argininosuccinate synthase compare
BWI76_RS04665 -5.5 -15.2 3-isopropylmalate dehydratase small subunit compare
BWI76_RS21475 -5.4 -4.5 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS25645 -5.4 -10.9 shikimate dehydrogenase compare
BWI76_RS11840 -5.3 -4.7 tryptophan synthase subunit alpha compare
BWI76_RS04160 -5.3 -8.7 phosphoserine phosphatase compare
BWI76_RS09910 -5.3 -15.8 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS23920 -5.3 -6.3 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS11855 -5.2 -6.6 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS01610 -5.2 -6.0 phosphoribosylamine--glycine ligase compare
BWI76_RS00975 -5.1 -7.4 dihydroxy-acid dehydratase compare
BWI76_RS24285 -5.0 -7.2 cystathionine beta-lyase compare
BWI76_RS22765 -4.9 -13.2 sulfite reductase subunit alpha compare
BWI76_RS00400 -4.8 -3.3 glutamine synthetase compare
BWI76_RS05835 -4.8 -5.7 gamma-glutamyl-phosphate reductase compare
BWI76_RS04680 -4.8 -10.3 2-isopropylmalate synthase compare
BWI76_RS11845 -4.8 -3.0 tryptophan synthase subunit beta compare
BWI76_RS21465 -4.8 -3.6 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS22760 -4.6 -7.7 sulfite reductase subunit beta compare
BWI76_RS02735 -4.6 -7.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS01200 -4.5 -4.4 diaminopimelate epimerase compare
BWI76_RS22755 -4.5 -5.9 phosphoadenosine phosphosulfate reductase compare
BWI76_RS00180 -4.5 -2.7 F0F1 ATP synthase subunit epsilon compare
BWI76_RS00985 -4.3 -8.0 transcriptional regulator IlvY compare
BWI76_RS01800 -4.3 -6.2 glucose-6-phosphate isomerase compare
BWI76_RS27390 -4.3 -4.0 ribonuclease PH compare
BWI76_RS20435 -4.2 -2.5 chorismate synthase compare
BWI76_RS15115 -4.0 -6.1 MFS transporter compare
BWI76_RS20650 -3.9 -2.7 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS22690 -3.9 -3.9 adenylyl-sulfate kinase compare
BWI76_RS04645 -3.7 -4.8 3-dehydroquinase compare
BWI76_RS18950 -3.7 -3.9 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS23230 -3.7 -2.5 exodeoxyribonuclease V subunit beta compare
BWI76_RS10990 -3.7 -1.9 dihydroorotase compare
BWI76_RS04240 -3.5 -1.5 thr operon leader peptide compare
BWI76_RS26000 -3.5 -10.8 aspartate aminotransferase family protein compare
BWI76_RS09660 -3.4 -2.3 DNA translocase FtsK compare
BWI76_RS06765 -3.1 -3.4 transcriptional regulator compare
BWI76_RS23240 -3.0 -3.6 exonuclease V subunit gamma compare
BWI76_RS23480 -3.0 -13.8 EAL domain-containing protein compare
BWI76_RS26055 -2.8 -7.6 siroheme synthase compare
BWI76_RS05015 -2.6 -3.1 transcriptional regulator compare
BWI76_RS26570 -2.6 -2.7 anion permease compare
BWI76_RS06525 -2.5 -8.4 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS00345 -2.4 -5.5 protein disulfide oxidoreductase DsbA compare
BWI76_RS23265 -2.3 -5.6 hypothetical protein compare
BWI76_RS22695 -2.3 -8.0 sulfate adenylyltransferase compare
BWI76_RS00960 -2.2 -3.8 acetolactate synthase 2 catalytic subunit compare
BWI76_RS01275 -2.2 -7.3 LysR family transcriptional regulator compare
BWI76_RS01210 -2.1 -3.0 tyrosine recombinase XerC compare
BWI76_RS04305 -2.1 -1.8 molecular chaperone DnaJ compare
BWI76_RS13915 -2.1 -4.8 magnesium transport protein MgtC compare
BWI76_RS15225 -2.1 -2.3 DeoR family transcriptional regulator compare
BWI76_RS15835 -2.1 -1.9 hypothetical protein compare
BWI76_RS01350 -2.1 -2.0 NAD(P)H-flavin reductase compare
BWI76_RS23885 -2.0 -2.2 2-octaprenylphenol hydroxylase compare
BWI76_RS06530 -2.0 -7.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS19375 -2.0 -2.3 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS20970 -1.9 -2.2 phosphoribosylglycinamide formyltransferase compare
BWI76_RS26620 -1.8 -1.9 Fe-S biogenesis protein NfuA compare
BWI76_RS05555 -1.8 -4.7 Crl family RNA polymerase assembly factor compare
BWI76_RS12090 -1.8 -2.7 HNH endonuclease compare
BWI76_RS20640 -1.7 -5.0 cysteine synthase A compare
BWI76_RS21370 -1.7 -2.5 ATP-dependent RNA helicase SrmB compare
BWI76_RS12040 -1.7 -2.0 hypothetical protein compare
BWI76_RS20380 -1.6 -1.7 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS22700 -1.6 -5.8 sulfate adenylyltransferase subunit 2 compare
BWI76_RS15850 -1.5 -1.0 DUF1317 domain-containing protein compare
BWI76_RS06485 -1.5 -3.0 cytochrome o ubiquinol oxidase subunit III compare
BWI76_RS19870 -1.5 -3.5 malate:quinone oxidoreductase compare
BWI76_RS09655 -1.5 -3.9 leucine-responsive regulatory protein compare
BWI76_RS15110 -1.5 -8.5 putative excinuclease ABC subunit A compare
BWI76_RS25335 -1.5 -4.4 stringent starvation protein A compare
BWI76_RS12420 -1.5 -1.5 peptide ABC transporter substrate-binding protein SapA compare
BWI76_RS25065 -1.4 -4.4 polyribonucleotide nucleotidyltransferase compare
BWI76_RS21505 -1.4 -1.6 hypothetical protein compare
BWI76_RS20440 -1.4 -1.2 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS02410 -1.4 -2.5 EF-P beta-lysylation protein EpmB compare
BWI76_RS00390 -1.3 -3.8 two-component system sensor histidine kinase NtrB compare
BWI76_RS27430 -1.3 -1.3 (p)ppGpp synthetase compare
BWI76_RS15840 -1.3 -2.1 prophage protein compare
BWI76_RS19690 -1.3 -3.5 LysR family transcriptional regulator compare
BWI76_RS22705 -1.3 -6.5 siroheme synthase compare
BWI76_RS20995 -1.3 -4.3 RNA degradosome polyphosphate kinase compare
BWI76_RS15830 -1.3 -2.0 hypothetical protein compare
BWI76_RS24075 -1.2 -4.1 glutathione synthase compare
BWI76_RS00355 -1.2 -3.7 DNA polymerase I compare
BWI76_RS18715 -1.2 -5.4 hypothetical protein compare
BWI76_RS08665 -1.2 -4.9 6-phosphogluconolactonase compare
BWI76_RS21480 -1.2 -2.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS04100 -1.2 -4.2 peptide chain release factor 3 compare
BWI76_RS00380 -1.2 -5.5 oxygen-independent coproporphyrinogen III oxidase compare
BWI76_RS25315 -1.1 -7.0 glutamate synthase large subunit compare
BWI76_RS21000 -1.1 -5.7 exopolyphosphatase compare
BWI76_RS00600 -1.1 -4.0 LacI family transcriptional regulator compare
BWI76_RS19025 -1.1 -7.6 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
BWI76_RS02530 -1.1 -1.7 tRNA dimethylallyltransferase compare
BWI76_RS00385 -1.1 -7.0 nitrogen assimilation regulatory protein compare
BWI76_RS13595 -1.1 -2.4 transcriptional regulator compare
BWI76_RS27915 -1.1 -2.1 YceK/YidQ family lipoprotein compare
BWI76_RS04705 -1.1 -3.9 DNA-binding transcriptional regulator FruR compare
BWI76_RS09190 -1.1 -3.7 hypothetical protein compare
BWI76_RS06465 -1.1 -1.5 IclR family transcriptional regulator compare
BWI76_RS01550 -1.1 -4.5 thiamine phosphate synthase compare
BWI76_RS05200 -1.1 -2.2 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS18165 -1.1 -1.5 NUDIX pyrophosphatase compare
BWI76_RS17975 -1.1 -2.1 tail-specific protease compare
BWI76_RS15825 -1.1 -1.6 hypothetical protein compare
BWI76_RS24025 -1.1 -6.9 agmatinase compare
BWI76_RS11130 -1.0 -4.0 PTS glucose transporter subunit IIBC compare
BWI76_RS26075 -1.0 -2.1 DNA adenine methylase compare
BWI76_RS25320 -1.0 -4.6 glutamate synthase compare
BWI76_RS19240 -1.0 -1.7 ABC transporter substrate-binding protein compare
BWI76_RS24900 -1.0 -1.2 DeoR family transcriptional regulator compare
BWI76_RS18710 -1.0 -6.5 GGDEF-domain containing protein compare
BWI76_RS26175 -1.0 -2.9 DeoR/GlpR family transcriptional regulator compare
BWI76_RS05450 -1.0 -1.7 ribonuclease HI compare
BWI76_RS21450 -0.9 -2.1 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS06770 -0.9 -5.7 Hha toxicity attenuator compare
BWI76_RS01545 -0.9 -1.8 thiamine biosynthesis protein ThiS compare
BWI76_RS25070 -0.9 -1.7 hypothetical protein compare
BWI76_RS21140 -0.9 -1.3 molecular chaperone HscA compare
BWI76_RS01540 -0.9 -2.2 thiamine biosynthesis protein ThiS compare
BWI76_RS00720 -0.9 -1.6 DNA-binding response regulator compare
BWI76_RS09650 -0.9 -4.1 hypothetical protein compare
BWI76_RS23485 -0.9 -5.7 hypothetical protein compare
BWI76_RS09870 -0.9 -3.8 aromatic amino acid aminotransferase compare
BWI76_RS06475 -0.9 -0.9 protoheme IX farnesyltransferase compare
BWI76_RS25505 -0.9 -5.2 RNase E specificity factor CsrD compare
BWI76_RS17110 -0.9 -1.6 vitamin B12 ABC transporter permease BtuC compare
BWI76_RS06185 -0.9 -5.5 shikimate kinase II compare
BWI76_RS25415 -0.8 -1.9 GntR family transcriptional regulator compare
BWI76_RS01870 -0.8 -3.0 diacylglycerol kinase compare
BWI76_RS01555 -0.8 -5.5 phosphomethylpyrimidine synthase ThiC compare
BWI76_RS19845 -0.8 -2.5 phosphatase compare
BWI76_RS25160 -0.8 -1.8 transcription elongation factor GreA compare
BWI76_RS26200 -0.8 -4.9 starch synthase compare
BWI76_RS15015 -0.8 -1.3 DUF2132 domain-containing protein compare
BWI76_RS06800 -0.8 -1.2 DUF2496 domain-containing protein compare
BWI76_RS01535 -0.8 -5.0 thiazole synthase compare
BWI76_RS17675 -0.8 -1.1 hypothetical protein compare
BWI76_RS05570 -0.8 -1.2 hypothetical protein compare
BWI76_RS24120 -0.8 -3.6 YggW family oxidoreductase compare
BWI76_RS01530 -0.8 -4.6 2-iminoacetate synthase ThiH compare
BWI76_RS19380 -0.8 -2.8 hydroxyethylthiazole kinase compare
BWI76_RS25425 -0.8 -1.2 arginine repressor compare
BWI76_RS04270 -0.8 -2.7 transaldolase compare
BWI76_RS24485 -0.8 -1.7 bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase compare
BWI76_RS16205 -0.8 -2.9 NAD(P) transhydrogenase subunit alpha compare
BWI76_RS20230 -0.7 -1.1 hypothetical protein compare
BWI76_RS02985 -0.7 -4.0 reactive intermediate/imine deaminase compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms