Experiment set8IT044 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS15845 +0.9 1.9 hypothetical protein compare
BWI76_RS24945 +0.9 2.0 glutamine amidotransferase compare
BWI76_RS11060 +0.9 3.1 septum formation inhibitor Maf compare
BWI76_RS19330 +0.9 1.7 HAD family hydrolase compare
BWI76_RS12185 +0.8 2.4 hypothetical protein compare
BWI76_RS21200 +0.8 3.3 aldose epimerase compare
BWI76_RS06680 +0.8 1.3 hypothetical protein compare
BWI76_RS20720 +0.8 1.4 hypothetical protein compare
BWI76_RS20795 +0.8 1.7 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS07955 +0.8 1.5 nucleoside diphosphate kinase regulator compare
BWI76_RS21130 +0.7 2.6 Fe-S assembly protein IscX compare
BWI76_RS05965 +0.7 1.5 hypothetical protein compare
BWI76_RS08330 +0.7 1.8 hypothetical protein compare
BWI76_RS10500 +0.7 1.9 flavoprotein monooxygenase compare
BWI76_RS17765 +0.7 1.7 hypothetical protein compare
BWI76_RS04655 +0.7 2.2 shikimate dehydrogenase compare
BWI76_RS17565 +0.7 1.5 hypothetical protein compare
BWI76_RS10530 +0.7 2.6 GntR family transcriptional regulator with compare
BWI76_RS11635 +0.7 1.7 ABC transporter compare
BWI76_RS14935 +0.7 1.4 NIPSNAP family containing protein compare
BWI76_RS17735 +0.7 3.1 D-amino acid dehydrogenase small subunit compare
BWI76_RS14625 +0.7 1.4 protein TolA compare
BWI76_RS24825 +0.7 1.1 2-hydroxy-3-oxopropionate reductase compare
BWI76_RS18605 +0.6 1.6 oxidoreductase molybdopterin-binding protein compare
BWI76_RS01885 +0.6 1.4 CsbD family protein compare
BWI76_RS23895 +0.6 1.3 Xaa-Pro aminopeptidase compare
BWI76_RS18770 +0.6 1.3 DNA gyrase inhibitor compare
BWI76_RS09860 +0.6 1.7 hypothetical protein compare
BWI76_RS10745 +0.6 1.2 hypothetical protein compare
BWI76_RS21375 +0.6 1.8 autonomous glycyl radical cofactor GrcA compare
BWI76_RS09505 +0.6 1.7 arginine transporter permease subunit ArtM compare
BWI76_RS13890 +0.6 1.6 LysR family transcriptional regulator compare
BWI76_RS09690 +0.6 1.9 dimethyl sulfoxide reductase compare
BWI76_RS10040 +0.6 1.8 heat-shock protein HspQ compare
BWI76_RS01585 +0.6 3.8 transcriptional regulator compare
BWI76_RS22815 +0.6 4.2 hybrid sensor histidine kinase/response regulator compare
BWI76_RS11440 +0.6 1.2 hypothetical protein compare
BWI76_RS05075 +0.6 1.0 type II secretion system protein GspG compare
BWI76_RS24225 +0.6 2.0 hypothetical protein compare
BWI76_RS12870 +0.6 1.3 putative phytanoyl-CoA dioxygenase compare
BWI76_RS20145 +0.6 1.5 NADH-quinone oxidoreductase subunit K compare
BWI76_RS03295 +0.6 1.6 transposase compare
BWI76_RS13155 +0.6 2.6 hypothetical protein compare
BWI76_RS26095 +0.6 1.6 shikimate kinase compare
BWI76_RS03045 +0.6 1.2 hypothetical protein compare
BWI76_RS08405 +0.6 2.1 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS25380 +0.6 2.3 oxaloacetate decarboxylase subunit beta compare
BWI76_RS23735 +0.6 2.5 sugar diacid utilization regulator compare
BWI76_RS11920 +0.6 1.8 hypothetical protein compare
BWI76_RS21810 +0.6 1.6 universal stress protein compare
BWI76_RS23170 +0.6 1.9 aldehyde dehydrogenase EutE compare
BWI76_RS09635 +0.6 1.2 amino acid ABC transporter ATP-binding protein compare
BWI76_RS17045 +0.6 1.3 hypothetical protein compare
BWI76_RS13380 +0.6 2.2 hypothetical protein compare
BWI76_RS24720 +0.6 1.5 hypothetical protein compare
BWI76_RS03180 +0.6 2.2 phage transcriptional regulator, AlpA compare
BWI76_RS06200 +0.5 2.1 hypothetical protein compare
BWI76_RS05260 +0.5 1.4 chaperone compare
BWI76_RS12620 +0.5 1.8 2-nitropropane dioxygenase compare
BWI76_RS13315 +0.5 1.7 50S ribosomal protein L7/L12-serine acetyltransferase compare
BWI76_RS20050 +0.5 1.3 hypothetical protein compare
BWI76_RS27735 +0.5 1.3 hypothetical protein compare
BWI76_RS03105 +0.5 1.0 myo-inosose-2 dehydratase compare
BWI76_RS04895 +0.5 2.1 hypothetical protein compare
BWI76_RS16315 +0.5 0.8 SirA-like protein compare
BWI76_RS20280 +0.5 2.5 phosphodiesterase compare
BWI76_RS21740 +0.5 1.3 transcriptional regulator, LysR family protein compare
BWI76_RS17715 +0.5 3.3 murein transglycosylase compare
BWI76_RS23705 +0.5 2.6 2-deoxy-D-ribonyl-CoA 3-dehydrogenase (from data) compare
BWI76_RS04050 +0.5 1.7 hydroxamate siderophore iron reductase FhuF compare
BWI76_RS05515 +0.5 1.8 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
BWI76_RS12260 +0.5 2.0 hypothetical protein compare
BWI76_RS18915 +0.5 1.9 NAD(P)-dependent oxidoreductase compare
BWI76_RS24060 +0.5 2.3 SprT family protein compare
BWI76_RS13470 +0.5 1.8 transporter compare
BWI76_RS14835 +0.5 1.2 hypothetical protein compare
BWI76_RS05655 +0.5 1.8 hypothetical protein compare
BWI76_RS11335 +0.5 1.0 tautomerase compare
BWI76_RS12755 +0.5 1.5 hypothetical protein compare
BWI76_RS14770 +0.5 1.1 PTS IIA 2 domain protein compare
BWI76_RS08275 +0.5 1.3 LexA regulated protein compare
BWI76_RS13975 +0.5 1.5 urea carboxylase compare
BWI76_RS21395 +0.5 1.9 DTW domain-containing protein compare
BWI76_RS25655 +0.5 1.7 DNA topoisomerase type IA zn finger domain-containing protein compare
BWI76_RS14300 +0.5 1.6 hypothetical protein compare
BWI76_RS16190 +0.5 1.7 universal stress protein UspE compare
BWI76_RS17770 +0.5 1.2 isomerase/hydrolase compare
BWI76_RS20035 +0.5 1.3 hypothetical protein compare
BWI76_RS22640 +0.5 0.7 hypothetical protein compare
BWI76_RS00565 +0.5 2.1 branched-chain amino acid transport compare
BWI76_RS12465 +0.5 0.9 phage shock protein D compare
BWI76_RS18225 +0.5 2.3 universal stress protein C compare
BWI76_RS14320 +0.5 1.0 hypothetical protein compare
BWI76_RS00560 +0.5 2.2 hypothetical protein compare
BWI76_RS15745 +0.5 1.3 hypothetical protein compare
BWI76_RS06230 +0.4 1.9 DNA-binding response regulator compare
BWI76_RS23375 +0.4 2.3 cupin compare
BWI76_RS08380 +0.4 0.9 endonuclease VIII compare
BWI76_RS12855 +0.4 0.8 enamine deaminase RidA compare
BWI76_RS15920 +0.4 1.1 hypothetical protein compare
BWI76_RS08495 +0.4 2.1 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS19895 +0.4 2.2 bifunctional transcriptional regulator/O6-methylguanine-DNA methyltransferase compare
BWI76_RS23050 +0.4 1.3 cobalt-precorrin-3B C(17)-methyltransferase compare
BWI76_RS11350 +0.4 2.1 DeoR family transcriptional regulator compare
BWI76_RS11780 +0.4 0.7 2-deoxyglucose-6-phosphatase compare
BWI76_RS20010 +0.4 2.2 catalase compare
BWI76_RS06435 +0.4 0.8 MFS transporter compare
BWI76_RS11150 +0.4 1.2 membrane protein compare
BWI76_RS21250 +0.4 2.5 two-component system response regulator GlrR compare
BWI76_RS26210 +0.4 3.3 glycogen debranching enzyme compare
BWI76_RS19860 +0.4 1.8 hypothetical protein compare
BWI76_RS15410 +0.4 1.4 N-acetyltransferase compare
BWI76_RS11665 +0.4 1.0 exodeoxyribonuclease III compare
BWI76_RS23535 +0.4 1.1 hypothetical protein compare
BWI76_RS11750 +0.4 2.1 chitooligosaccharide deacetylase compare
BWI76_RS07435 +0.4 1.3 LacI family transcriptional regulator compare
BWI76_RS08980 +0.4 0.8 DNA starvation/stationary phase protection protein compare
BWI76_RS20475 +0.4 1.6 phospholipid-binding lipoprotein MlaA compare
BWI76_RS09805 +0.4 2.3 hypothetical protein compare
BWI76_RS09020 +0.4 1.6 6-phospho-beta-glucosidase compare
BWI76_RS02930 +0.4 3.0 anaerobic ribonucleoside-triphosphate reductase activating protein compare
BWI76_RS10765 +0.4 2.4 pyrimidine utilization protein D compare
BWI76_RS16470 +0.4 0.9 transcriptional repressor NemR compare
BWI76_RS21675 +0.4 1.1 hypothetical protein compare
BWI76_RS11810 +0.4 1.0 outer membrane protein OmpW compare
BWI76_RS10820 +0.4 1.5 iron uptake system protein EfeO compare
BWI76_RS13020 +0.4 1.2 NmrA family protein compare
BWI76_RS19365 +0.4 2.2 ribulokinase compare
BWI76_RS14105 +0.4 1.5 NADH:ubiquinone reductase (Na(+)-transporting) subunit E compare
BWI76_RS06060 +0.4 1.7 DNA-binding response regulator compare
BWI76_RS17660 +0.4 1.9 AraC/XylS familytranscription regulator compare
BWI76_RS19905 +0.4 2.3 OmpK36 porin compare
BWI76_RS09530 +0.4 0.7 hypothetical protein compare
BWI76_RS08600 +0.4 1.3 3-deoxy-7-phosphoheptulonate synthase compare
BWI76_RS10650 +0.4 1.6 PTS fructose-like transporter subunit EIIB compare
BWI76_RS08545 +0.4 1.2 cell division protein CpoB compare
BWI76_RS23690 +0.4 1.2 putative glyoxalase/bleomycin resistance protein/dioxygenase compare
BWI76_RS24910 +0.4 2.7 rRNA (cytidine-2'-O-)-methyltransferase compare
BWI76_RS15975 +0.4 0.7 hypothetical protein compare
BWI76_RS09555 +0.4 1.5 pyruvate oxidase compare
BWI76_RS13775 +0.4 1.3 putative FMN-dependent luciferase-like monooxygenase compare
BWI76_RS21470 +0.4 1.8 gluconolaconase compare
BWI76_RS13820 +0.4 0.8 hypothetical protein compare
BWI76_RS17970 +0.4 0.8 zinc metalloprotease HtpX compare
BWI76_RS15760 +0.4 0.9 hypothetical protein compare
BWI76_RS18815 +0.4 1.2 nitrogenase molybdenum-iron protein alpha chain compare
BWI76_RS20180 +0.4 2.0 NADH-quinone oxidoreductase subunit C/D compare
BWI76_RS06895 +0.4 1.4 biopolymer transporter ExbB compare
BWI76_RS20285 +0.4 2.6 glutathione S-transferase compare
BWI76_RS12940 +0.4 0.9 AraC family transcriptional regulator compare
BWI76_RS04135 +0.4 2.3 thymidine phosphorylase compare
BWI76_RS13805 +0.4 0.8 inorganic diphosphatase compare
BWI76_RS15450 +0.4 1.4 hypothetical protein compare
BWI76_RS01335 +0.4 2.0 DNase TatD compare
BWI76_RS01000 +0.4 1.1 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS18090 +0.4 1.2 phosphoribosylglycinamide formyltransferase 2 compare
BWI76_RS18335 +0.4 2.0 DNA-binding response regulator compare
BWI76_RS05945 +0.4 2.0 amino acid ABC transporter permease compare
BWI76_RS01235 +0.4 1.1 hypothetical protein compare
BWI76_RS23470 +0.4 3.3 hypothetical protein compare
BWI76_RS26515 +0.4 1.4 nickel import ATP-binding protein NikD compare
BWI76_RS21485 +0.4 2.7 DUF4154 domain-containing protein compare
BWI76_RS15285 +0.4 1.4 stress protection protein MarC compare
BWI76_RS15660 +0.4 0.6 hypothetical protein compare
BWI76_RS13685 +0.4 1.2 IclR family transcriptional regulator compare
BWI76_RS16785 +0.4 1.9 peptidase M20 compare
BWI76_RS00025 +0.4 0.6 hypothetical protein compare
BWI76_RS24965 +0.4 1.6 SCP2 domain-containing protein compare
BWI76_RS16625 +0.4 2.2 putative oxidoreductase compare
BWI76_RS06440 +0.4 1.6 AP endonuclease compare
BWI76_RS13730 +0.4 1.2 hypothetical protein compare
BWI76_RS09455 +0.4 1.3 YbjN domain-containing protein compare
BWI76_RS15200 +0.4 1.3 glutaminase compare
BWI76_RS11035 +0.4 1.4 putative LysR-family transcriptional regulator compare
BWI76_RS15035 +0.4 0.9 metal ABC transporter permease compare
BWI76_RS07755 +0.4 1.7 isochorismatase compare
BWI76_RS15565 +0.4 0.9 hypothetical protein compare
BWI76_RS13720 +0.4 1.6 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
BWI76_RS15365 +0.4 2.0 hypothetical protein compare
BWI76_RS01940 +0.3 1.5 hypothetical protein compare
BWI76_RS20000 +0.3 1.8 competence/damage-inducible protein A compare
BWI76_RS12625 +0.3 1.6 isoflavone reductase compare
BWI76_RS08315 +0.3 1.0 K+-transporting ATPase subunit B compare
BWI76_RS23400 +0.3 2.0 oligogalacturonide lyase compare
BWI76_RS24035 +0.3 1.9 hypothetical protein compare
BWI76_RS16120 +0.3 1.4 4-carboxymuconolactone decarboxylase compare
BWI76_RS24925 +0.3 1.0 DnaA initiator-associating protein DiaA compare
BWI76_RS21015 +0.3 1.7 LysR family transcriptional regulator compare
BWI76_RS12865 +0.3 1.2 acetylornithine deacetylase compare
BWI76_RS11935 +0.3 1.1 YmiA family putative membrane protein compare
BWI76_RS06595 +0.3 1.1 hypothetical protein compare
BWI76_RS05430 +0.3 1.7 UbiE/COQ5 family methyltransferase compare
BWI76_RS22895 +0.3 2.1 FAD-dependent oxidoreductase compare
BWI76_RS18755 +0.3 0.6 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS12715 +0.3 1.5 universal stress protein F compare
BWI76_RS13745 +0.3 1.5 formate dehydrogenase subunit beta compare
BWI76_RS17945 +0.3 0.9 hypothetical protein compare
BWI76_RS20375 +0.3 1.0 membrane protein compare
BWI76_RS27945 +0.3 1.1 2-oxo-3-deoxygalactonate kinase compare
BWI76_RS26910 +0.3 1.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms