Experiment set8IT043 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Trisodium citrate dihydrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_4418 +2.7 4.0 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_3271 +2.2 7.3 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_2252 +2.0 5.5 NreA-like protein compare
Pf6N2E2_5555 +1.7 3.3 Cold shock protein CspA compare
Pf6N2E2_2770 +1.7 14.4 Tricarboxylate transport membrane protein TctA conserved
Pf6N2E2_5420 +1.6 8.4 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Pf6N2E2_3942 +1.5 11.0 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_4181 +1.5 2.5 Organic hydroperoxide resistance protein compare
Pf6N2E2_1040 +1.5 3.4 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_3192 +1.5 4.0 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_2769 +1.4 7.4 Tricarboxylate transport protein TctB conserved
Pf6N2E2_3941 +1.3 5.3 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_2253 +1.3 2.5 hypothetical protein compare
Pf6N2E2_5207 +1.3 2.5 hypothetical protein compare
Pf6N2E2_5571 +1.2 2.3 hypothetical protein compare
Pf6N2E2_1596 +1.1 1.7 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_5178 +1.1 2.9 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5705 +1.1 2.9 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_4159 +1.1 3.5 Cytochrome c4 compare
Pf6N2E2_4803 +1.1 1.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_760 +1.1 8.1 Na+/H+ antiporter NhaB compare
Pf6N2E2_5554 +1.1 4.3 FIG023103: Predicted transmembrane protein compare
Pf6N2E2_5160 +1.1 2.6 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_2254 +1.1 3.3 Cell filamentation protein fic compare
Pf6N2E2_5157 +1.1 7.0 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3134 +1.0 1.3 hypothetical protein compare
Pf6N2E2_2323 +1.0 2.6 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_4365 +1.0 6.7 Ribonuclease PH (EC 2.7.7.56) compare
Pf6N2E2_746 +1.0 2.2 FIG00958097: hypothetical protein compare
Pf6N2E2_3828 +1.0 3.5 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf6N2E2_1617 +1.0 1.3 COG2199: FOG: GGDEF domain compare
Pf6N2E2_3021 +0.9 1.8 hypothetical protein compare
Pf6N2E2_1758 +0.9 2.2 Transcriptional regulator, MarR family compare
Pf6N2E2_2791 +0.9 2.5 FIG00954883: hypothetical protein compare
Pf6N2E2_4624 +0.9 1.3 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_5338 +0.9 6.1 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_6093 +0.9 1.8 hypothetical protein compare
Pf6N2E2_1502 +0.9 2.0 Two-component system regulatory protein compare
Pf6N2E2_3656 +0.9 5.5 Probable transcription regulator Mig-14 compare
Pf6N2E2_5084 +0.9 6.1 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Pf6N2E2_5861 +0.9 5.5 FIG00953885: hypothetical protein compare
Pf6N2E2_3312 +0.8 3.4 Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) compare
Pf6N2E2_1508 +0.8 3.4 DNA-binding response regulator compare
Pf6N2E2_546 +0.8 1.1 FIG00966904: hypothetical protein compare
Pf6N2E2_1238 +0.8 1.7 hypothetical protein compare
Pf6N2E2_4364 +0.8 2.3 Protein YicC compare
Pf6N2E2_1660 +0.8 1.9 RND efflux system, membrane fusion protein CmeA compare
Pf6N2E2_3521 +0.8 5.6 Sensor histidine kinase/response regulator compare
Pf6N2E2_3885 +0.8 2.9 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_1797 +0.8 2.4 Transcriptional regulator compare
Pf6N2E2_1299 +0.8 1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_4025 +0.8 1.9 hypothetical protein compare
Pf6N2E2_2825 +0.8 3.1 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_156 +0.8 1.1 Carbon storage regulator compare
Pf6N2E2_1782 +0.8 2.4 STAS domain protein compare
Pf6N2E2_3696 +0.8 1.2 hypothetical protein compare
Pf6N2E2_2176 +0.8 2.2 Amidases related to nicotinamidase compare
Pf6N2E2_434 +0.8 0.8 hypothetical protein compare
Pf6N2E2_5153 +0.8 4.2 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf6N2E2_2792 +0.8 3.0 Antitoxin 1 compare
Pf6N2E2_1009 +0.8 2.4 Inositol transport system permease protein compare
Pf6N2E2_4052 +0.8 1.6 FIG00955481: hypothetical protein compare
Pf6N2E2_1162 +0.8 1.8 Transmembrane amino acid efflux protein compare
Pf6N2E2_1749 +0.8 2.5 Cyn operon transcriptional activator compare
Pf6N2E2_3191 +0.8 2.3 Serine acetyltransferase (EC 2.3.1.30) compare
Pf6N2E2_1989 +0.7 1.8 hypothetical protein compare
Pf6N2E2_3088 +0.7 1.9 hypothetical protein compare
Pf6N2E2_1462 +0.7 3.3 Nicotinamidase/isochorismatase family protein compare
Pf6N2E2_3009 +0.7 2.1 Phage tail tube protein compare
Pf6N2E2_3980 +0.7 5.1 Type I secretion system, outer membrane component LapE compare
Pf6N2E2_3314 +0.7 5.2 Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2) compare
Pf6N2E2_3569 +0.7 1.6 hypothetical protein compare
Pf6N2E2_2561 +0.7 1.8 FIG00955434: hypothetical protein compare
Pf6N2E2_923 +0.7 2.0 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_3303 +0.7 2.3 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_1412 +0.7 1.9 hypothetical protein compare
Pf6N2E2_2527 +0.7 2.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3791 +0.7 5.0 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_1176 +0.7 2.0 Mll2356 protein compare
Pf6N2E2_5262 +0.7 2.1 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_3978 +0.7 5.1 Type I secretion system, membrane fusion protein LapC compare
Pf6N2E2_3204 +0.7 2.6 Rho-specific inhibitor of transcription termination (YaeO) compare
Pf6N2E2_5768 +0.7 2.4 DNA recombination-dependent growth factor C compare
Pf6N2E2_5158 +0.7 2.7 FIG00954153: hypothetical protein compare
Pf6N2E2_1534 +0.7 1.3 Probable transmembrane protein compare
Pf6N2E2_3096 +0.7 1.1 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_127 +0.7 1.0 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_4545 +0.7 1.5 hypothetical protein compare
Pf6N2E2_4279 +0.7 4.8 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_5337 +0.6 3.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2675 +0.6 0.7 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_4996 +0.6 1.3 LSU m3Psi1915 methyltransferase RlmH compare
Pf6N2E2_6018 +0.6 2.0 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_2106 +0.6 1.3 hypothetical protein compare
Pf6N2E2_962 +0.6 1.4 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_2139 +0.6 1.7 Paraquat-inducible protein A compare
Pf6N2E2_4392 +0.6 1.9 Translation initiation inhibitor compare
Pf6N2E2_3018 +0.6 2.5 FIG00955390: hypothetical protein compare
Pf6N2E2_3979 +0.6 4.7 Type I secretion system ATPase, LssB family LapB compare
Pf6N2E2_1438 +0.6 2.6 Methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_4464 +0.6 1.8 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf6N2E2_4277 +0.6 4.6 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_476 +0.6 1.4 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_445 +0.6 3.0 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_3655 +0.6 4.8 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_1303 +0.6 1.6 TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter compare
Pf6N2E2_2399 +0.6 3.1 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase compare
Pf6N2E2_5862 +0.6 1.5 Lipoprotein, putative compare
Pf6N2E2_5664 +0.6 3.4 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
Pf6N2E2_2755 +0.6 1.2 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_3270 +0.6 2.1 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_114 +0.6 1.9 Polysaccharide biosynthesis protein compare
Pf6N2E2_5689 +0.6 2.3 Flagellar biosynthesis protein FlgN compare
Pf6N2E2_4278 +0.6 3.9 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_2101 +0.6 2.5 hypothetical protein compare
Pf6N2E2_2225 +0.6 1.2 FIG00953489: hypothetical protein compare
Pf6N2E2_1896 +0.6 1.0 hypothetical protein compare
Pf6N2E2_4993 +0.6 1.4 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_2278 +0.6 4.6 Transcription-repair coupling factor compare
Pf6N2E2_5236 +0.6 1.7 hypothetical protein compare
Pf6N2E2_723 +0.6 1.6 FIG138517: Putative lipid carrier protein compare
Pf6N2E2_2640 +0.5 1.5 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_1032 +0.5 0.7 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_1193 +0.5 2.5 Outer membrane porin, OprD family compare
Pf6N2E2_291 +0.5 2.9 ATP-dependent Clp protease adaptor protein ClpS compare
Pf6N2E2_2181 +0.5 0.9 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_1028 +0.5 1.8 Transcriptional regulator, LysR family compare
Pf6N2E2_724 +0.5 1.3 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf6N2E2_491 +0.5 2.3 hypothetical protein compare
Pf6N2E2_5448 +0.5 3.1 hypothetical protein compare
Pf6N2E2_33 +0.5 1.4 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_3179 +0.5 1.4 FIG021952: putative membrane protein compare
Pf6N2E2_5128 +0.5 2.4 COG1496: Uncharacterized conserved protein compare
Pf6N2E2_464 +0.5 1.4 Sensory histidine kinase QseC compare
Pf6N2E2_394 +0.5 2.9 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_1319 +0.5 2.0 FIG074102: hypothetical protein compare
Pf6N2E2_5955 +0.5 2.3 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf6N2E2_2524 +0.5 3.0 S-adenosylhomocysteine deaminase (EC 3.5.4.28); Methylthioadenosine deaminase compare
Pf6N2E2_338 +0.5 0.9 Transcriptional regulator, AraC family compare
Pf6N2E2_4747 +0.5 1.2 Transmembrane sensor compare
Pf6N2E2_955 +0.5 1.5 FIG00953508: hypothetical protein compare
Pf6N2E2_4548 +0.5 1.6 hypothetical protein compare
Pf6N2E2_1885 +0.5 1.3 Transcriptional regulator, AraC family compare
Pf6N2E2_4477 +0.5 2.0 Z-ring-associated protein ZapA compare
Pf6N2E2_2790 +0.5 0.9 Helix-turn-helix motif compare
Pf6N2E2_5733 +0.5 2.3 NLP/P60 family protein compare
Pf6N2E2_1747 +0.5 1.0 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_3695 +0.5 1.9 Helix-turn-helix motif compare
Pf6N2E2_4584 +0.5 1.9 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_5531 +0.5 1.7 hypothetical protein compare
Pf6N2E2_5906 +0.5 1.8 Flp pilus assembly protein, pilin Flp compare
Pf6N2E2_2200 +0.5 0.7 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_3981 +0.5 4.5 T1SS secreted agglutinin RTX compare
Pf6N2E2_3326 +0.5 1.2 hypothetical protein compare
Pf6N2E2_5771 +0.5 3.5 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_5556 +0.5 3.1 Aminomethyltransferase (EC 2.1.2.10) (from data) compare
Pf6N2E2_3226 +0.5 1.2 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_2300 +0.5 2.0 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM compare
Pf6N2E2_1173 +0.5 1.3 hypothetical protein compare
Pf6N2E2_919 +0.5 0.9 FIG00954373: hypothetical protein compare
Pf6N2E2_160 +0.5 1.6 hypothetical protein compare
Pf6N2E2_402 +0.5 2.0 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_2869 +0.5 0.8 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_339 +0.5 1.1 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_1471 +0.5 1.8 Dienelactone hydrolase and related enzymes compare
Pf6N2E2_4969 +0.5 0.8 hypothetical protein compare
Pf6N2E2_3792 +0.5 2.3 Glucans biosynthesis protein G precursor compare
Pf6N2E2_3625 +0.5 3.5 Flagellar motor rotation protein MotA compare
Pf6N2E2_922 +0.5 1.8 FIG00794167: hypothetical protein compare
Pf6N2E2_3151 +0.5 1.9 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_4029 +0.5 2.6 Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-) compare
Pf6N2E2_3037 +0.5 3.5 RNA polymerase sigma factor RpoS compare
Pf6N2E2_3122 +0.5 1.0 Chemotaxis signal transduction protein compare
Pf6N2E2_4534 +0.5 1.8 hypothetical protein compare
Pf6N2E2_1695 +0.5 1.9 Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme compare
Pf6N2E2_5034 +0.5 2.3 hypothetical protein compare
Pf6N2E2_728 +0.5 0.9 Nitrate/nitrite transporter compare
Pf6N2E2_5637 +0.5 2.1 hypothetical protein compare
Pf6N2E2_1774 +0.5 0.6 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_1958 +0.5 2.1 Predicted dinucleotide-binding enzymes compare
Pf6N2E2_4084 +0.5 2.7 Transcriptional regulator compare
Pf6N2E2_1701 +0.5 1.8 ABC transporter ATP-binding protein compare
Pf6N2E2_3522 +0.5 2.4 hypothetical protein compare
Pf6N2E2_1336 +0.5 1.7 AraC family transcription regulator compare
Pf6N2E2_3261 +0.5 1.9 hypothetical protein compare
Pf6N2E2_2682 +0.5 1.2 Transcriptional regulator, LysR family compare
Pf6N2E2_5339 +0.5 2.7 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_812 +0.5 1.9 Glycosyltransferase compare
Pf6N2E2_295 +0.5 0.9 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) compare
Pf6N2E2_3698 +0.5 1.7 Nicotinamidase family protein YcaC compare
Pf6N2E2_4829 +0.5 2.2 OsmC/Ohr family protein compare
Pf6N2E2_2350 +0.5 1.3 Oxygen-regulated invasion protein OrgB compare
Pf6N2E2_2499 +0.5 1.4 Competence protein ComEA helix-hairpin-helix region precursor compare
Pf6N2E2_4601 +0.5 0.9 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_1607 +0.5 2.0 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_2266 +0.5 1.5 Copper-sensing two-component system response regulator CusR compare
Pf6N2E2_1099 +0.5 0.9 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_5876 +0.5 1.9 Lipase (EC 3.1.1.3) compare
Pf6N2E2_6029 +0.5 1.2 hypothetical protein compare
Pf6N2E2_586 +0.5 3.2 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) compare


Specific Phenotypes

For 18 genes in this experiment

For carbon source Trisodium citrate dihydrate in Pseudomonas fluorescens FW300-N2E2

For carbon source Trisodium citrate dihydrate across organisms