Experiment set8IT043 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS27875 +1.1 2.6 membrane protein compare
BWI76_RS09455 +0.9 2.4 YbjN domain-containing protein compare
BWI76_RS17770 +0.8 2.0 isomerase/hydrolase compare
BWI76_RS15290 +0.8 1.8 transcriptional regulator compare
BWI76_RS18430 +0.8 1.9 hypothetical protein compare
BWI76_RS16935 +0.8 1.6 shikimate dehydrogenase compare
BWI76_RS09520 +0.8 2.2 arginine ABC transporter ATP-binding protein ArtP compare
BWI76_RS20720 +0.7 1.7 hypothetical protein compare
BWI76_RS21375 +0.7 1.4 autonomous glycyl radical cofactor GrcA compare
BWI76_RS09730 +0.7 1.9 pyruvate formate lyase 1-activating protein compare
BWI76_RS12145 +0.7 1.7 hypothetical protein compare
BWI76_RS14970 +0.7 2.0 pyrroline-5-carboxylate reductase compare
BWI76_RS20750 +0.7 1.3 carboxysome structural protein EutK compare
BWI76_RS13150 +0.7 2.4 carnitine operon protein CaiE compare
BWI76_RS16210 +0.7 1.9 hypothetical protein compare
BWI76_RS06540 +0.7 1.8 DNA-binding protein HU-beta compare
BWI76_RS12420 +0.7 1.2 peptide ABC transporter substrate-binding protein SapA compare
BWI76_RS13645 +0.6 1.6 N-hydroxyarylamine O-acetyltransferase compare
BWI76_RS11680 +0.6 2.2 succinylglutamate-semialdehyde dehydrogenase compare
BWI76_RS21685 +0.6 1.5 hypothetical protein compare
BWI76_RS04970 +0.6 1.9 ABC transporter permease compare
BWI76_RS25705 +0.6 3.4 hypothetical protein compare
BWI76_RS16015 +0.6 1.3 pheromone autoinducer 2 transporter compare
BWI76_RS08375 +0.6 1.9 pyroglutamyl-peptidase I compare
BWI76_RS16510 +0.6 1.6 transcriptional repressor PurR compare
BWI76_RS02745 +0.6 1.4 hypothetical protein compare
BWI76_RS20230 +0.6 1.1 hypothetical protein compare
BWI76_RS09680 +0.6 1.9 dimethyl sulfoxide reductase subunit A compare
BWI76_RS13335 +0.6 2.6 peptidase T compare
BWI76_RS11535 +0.6 3.1 putative oxidoreductase, Zn-dependent and NAD(P)-binding protein compare
BWI76_RS05075 +0.6 1.0 type II secretion system protein GspG compare
BWI76_RS08395 +0.6 1.9 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS16910 +0.6 0.9 2-keto-4-pentenoate hydratase compare
BWI76_RS22310 +0.6 3.2 hydrogenase 3 small subunit compare
BWI76_RS10765 +0.6 2.1 pyrimidine utilization protein D compare
BWI76_RS16895 +0.6 1.3 3-(3-hydroxy-phenyl)propionate transporter MhpT compare
BWI76_RS19980 +0.6 2.9 2-keto-3-deoxy-L-rhamnonate aldolase compare
BWI76_RS09940 +0.6 1.9 paraquat-inducible protein B compare
BWI76_RS06665 +0.6 1.7 membrane protein compare
BWI76_RS24925 +0.6 1.1 DnaA initiator-associating protein DiaA compare
BWI76_RS12855 +0.6 1.4 enamine deaminase RidA compare
BWI76_RS16070 +0.6 3.0 N-acetylmuramic acid 6-phosphate etherase compare
BWI76_RS03880 +0.6 2.9 homoprotocatechuate degradation operon regulator, HpaR compare
BWI76_RS20735 +0.6 2.6 N-acetylmuramoyl-L-alanine amidase compare
BWI76_RS20150 +0.5 1.2 NADH:ubiquinone oxidoreductase subunit J compare
BWI76_RS17735 +0.5 2.9 D-amino acid dehydrogenase small subunit compare
BWI76_RS06680 +0.5 0.8 hypothetical protein compare
BWI76_RS11980 +0.5 1.3 DeoR family transcriptional regulator compare
BWI76_RS21070 +0.5 1.6 outer membrane protein assembly factor BamB compare
BWI76_RS11635 +0.5 1.3 ABC transporter compare
BWI76_RS12045 +0.5 1.7 hypothetical protein compare
BWI76_RS23560 +0.5 2.1 hypothetical protein compare
BWI76_RS14900 +0.5 2.6 oxidoreductase compare
BWI76_RS11260 +0.5 1.5 hypothetical protein compare
BWI76_RS01235 +0.5 1.7 hypothetical protein compare
BWI76_RS15360 +0.5 1.2 hypothetical protein compare
BWI76_RS07765 +0.5 2.2 thioesterase compare
BWI76_RS15015 +0.5 1.2 DUF2132 domain-containing protein compare
BWI76_RS19215 +0.5 1.4 proline-specific peptidase compare
BWI76_RS02725 +0.5 1.0 HxlR family transcriptional regulator compare
BWI76_RS09500 +0.5 2.9 arginine ABC transporter substrate-binding protein compare
BWI76_RS05965 +0.5 1.6 hypothetical protein compare
BWI76_RS12550 +0.5 1.6 hypothetical protein compare
BWI76_RS13180 +0.5 2.0 multidrug transporter EmrA compare
BWI76_RS15345 +0.5 2.2 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
BWI76_RS18335 +0.5 2.9 DNA-binding response regulator compare
BWI76_RS15190 +0.5 3.4 GGDEF domain-containing protein compare
BWI76_RS08515 +0.5 1.5 acyl-CoA thioesterase YbgC compare
BWI76_RS15925 +0.5 1.8 dimethyl sulfoxide reductase subunit A compare
BWI76_RS16645 +0.5 1.1 DeoR family transcriptional regulator compare
BWI76_RS22450 +0.5 0.9 selenoprotein W-related protein compare
BWI76_RS07740 +0.5 1.4 Fe2+-enterobactin ABC transporter substrate-binding protein compare
BWI76_RS17955 +0.5 1.3 hypothetical protein compare
BWI76_RS07955 +0.5 2.1 nucleoside diphosphate kinase regulator compare
BWI76_RS12500 +0.5 1.1 dipeptide epimerase compare
BWI76_RS26520 +0.5 2.3 nickel import ATP-binding protein NikE compare
BWI76_RS18815 +0.5 2.0 nitrogenase molybdenum-iron protein alpha chain compare
BWI76_RS17665 +0.5 1.5 proteasome-type protease compare
BWI76_RS24765 +0.5 1.1 membrane protein compare
BWI76_RS10945 +0.5 1.6 SecY/SecA suppressor protein compare
BWI76_RS04710 +0.4 2.1 hypothetical protein compare
BWI76_RS02800 +0.4 1.9 ABC transporter compare
BWI76_RS08650 +0.4 0.9 molybdate ABC transporter permease compare
BWI76_RS17970 +0.4 1.2 zinc metalloprotease HtpX compare
BWI76_RS21500 +0.4 1.7 membrane protein compare
BWI76_RS21980 +0.4 1.4 hypothetical protein compare
BWI76_RS15200 +0.4 2.3 glutaminase compare
BWI76_RS11920 +0.4 1.2 hypothetical protein compare
BWI76_RS19310 +0.4 1.6 ABC transporter permease compare
BWI76_RS23735 +0.4 1.8 sugar diacid utilization regulator compare
BWI76_RS19790 +0.4 1.9 putative binding-protein-dependent transporter compare
BWI76_RS16655 +0.4 1.7 CatA-like O-acetyltransferase compare
BWI76_RS13635 +0.4 2.9 extracellular solute-binding protein compare
BWI76_RS15980 +0.4 1.3 lysine transporter LysE compare
BWI76_RS12605 +0.4 1.2 hypothetical protein compare
BWI76_RS22815 +0.4 3.6 hybrid sensor histidine kinase/response regulator compare
BWI76_RS11820 +0.4 0.9 short-chain dehydrogenase/reductase SDR compare
BWI76_RS20295 +0.4 2.0 dihydroneopterin triphosphate 2'-epimerase compare
BWI76_RS02940 +0.4 1.6 RpiR family transcriptional regulator compare
BWI76_RS23015 +0.4 1.1 cobalt transporter ATP-binding subunit compare
BWI76_RS12815 +0.4 1.4 transcriptional regulator FeaR compare
BWI76_RS06910 +0.4 1.0 transcriptional regulator compare
BWI76_RS20225 +0.4 2.6 hypothetical protein compare
BWI76_RS24825 +0.4 0.5 2-hydroxy-3-oxopropionate reductase compare
BWI76_RS13450 +0.4 2.5 acyl-CoA thioesterase compare
BWI76_RS10735 +0.4 1.4 hypothetical protein compare
BWI76_RS18305 +0.4 2.2 dihydrodipicolinate synthase family protein compare
BWI76_RS22360 +0.4 1.7 hydrogenase formation protein HypD compare
BWI76_RS10900 +0.4 1.6 putative oxidoreductase compare
BWI76_RS14320 +0.4 0.9 hypothetical protein compare
BWI76_RS17375 +0.4 1.5 nitrate ABC transporter, permease protein compare
BWI76_RS02635 +0.4 1.6 3-keto-L-gulonate-6-phosphate decarboxylase compare
BWI76_RS01000 +0.4 1.2 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS06785 +0.4 2.3 DNA-binding transcriptional repressor AcrR compare
BWI76_RS06520 +0.4 2.5 trigger factor compare
BWI76_RS18360 +0.4 0.7 aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein compare
BWI76_RS11570 +0.4 2.8 MFS transporter compare
BWI76_RS10465 +0.4 1.4 hypothetical protein compare
BWI76_RS00075 +0.4 1.7 N-acetylmannosamine-6-phosphate 2-epimerase compare
BWI76_RS14740 +0.4 1.6 LysR family transcriptional regulator compare
BWI76_RS12125 +0.4 0.7 hypothetical protein compare
BWI76_RS24390 +0.4 2.2 hypothetical protein compare
BWI76_RS21200 +0.4 1.5 aldose epimerase compare
BWI76_RS22530 +0.4 2.1 macrolide ABC transporter permease/ATP-binding protein MacB compare
BWI76_RS17100 +0.4 1.9 glutathione peroxidase compare
BWI76_RS13820 +0.4 0.6 hypothetical protein compare
BWI76_RS22210 +0.4 2.1 murein transglycosylase B compare
BWI76_RS26260 +0.4 1.4 hypothetical protein compare
BWI76_RS05870 +0.4 1.5 ABC transporter compare
BWI76_RS17045 +0.4 0.9 hypothetical protein compare
BWI76_RS16505 +0.4 2.2 MFS transporter compare
BWI76_RS09640 +0.4 1.3 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS23390 +0.4 1.5 oligogalacturonide ABC transporter ATP-binding protein compare
BWI76_RS09275 +0.4 1.5 major capsid protein compare
BWI76_RS24770 +0.4 1.1 hypothetical protein compare
BWI76_RS26445 +0.4 2.1 MFS transporter compare
BWI76_RS07790 +0.4 1.2 plasmid stabilization protein compare
BWI76_RS26890 +0.4 0.9 hypothetical protein compare
BWI76_RS13720 +0.4 1.6 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
BWI76_RS08545 +0.4 1.6 cell division protein CpoB compare
BWI76_RS19700 +0.4 1.3 deoxyribonuclease IV compare
BWI76_RS08310 +0.4 1.2 potassium-transporting ATPase subunit C compare
BWI76_RS20160 +0.4 1.7 NADH-quinone oxidoreductase subunit H compare
BWI76_RS00450 +0.4 1.2 formate dehydrogenase accessory protein FdhE compare
BWI76_RS16285 +0.4 2.2 hypothetical protein compare
BWI76_RS23125 +0.4 1.0 propanediol dehydratase small subunit compare
BWI76_RS05955 +0.4 2.1 ABC transporter compare
BWI76_RS16195 +0.4 0.7 hypothetical protein compare
BWI76_RS15300 +0.4 1.8 multiple antibiotic resistance regulatory periplasmic protein MarB compare
BWI76_RS27735 +0.4 0.8 hypothetical protein compare
BWI76_RS09320 +0.4 1.1 P2 phage tail completion protein R compare
BWI76_RS20145 +0.4 0.9 NADH-quinone oxidoreductase subunit K compare
BWI76_RS09670 +0.4 1.6 recombination factor protein RarA compare
BWI76_RS10490 +0.4 1.8 vanillate O-demethylase oxygenase subunit compare
BWI76_RS10510 +0.4 1.9 OHCU decarboxylase compare
BWI76_RS24660 +0.4 1.1 autoinducer 2 ABC transporter ATP-binding protein LsrA compare
BWI76_RS05500 +0.4 1.6 NADH:ubiquinone reductase (Na(+)-transporting) subunit C compare
BWI76_RS23510 +0.4 1.8 transcriptional regulator compare
BWI76_RS23535 +0.4 1.1 hypothetical protein compare
BWI76_RS03665 +0.4 1.0 ABC transporter ATP-binding protein compare
BWI76_RS26835 +0.4 1.7 hypothetical protein compare
BWI76_RS20280 +0.4 1.4 phosphodiesterase compare
BWI76_RS14930 +0.4 1.2 hypothetical protein compare
BWI76_RS09460 +0.4 1.4 spermidine/putrescine ABC transporter substrate-binding protein PotF compare
BWI76_RS04360 +0.4 1.3 ribonucleoside hydrolase RihC compare
BWI76_RS22390 +0.4 2.2 maltoporin compare
BWI76_RS07160 +0.4 1.8 MBL fold hydrolase compare
BWI76_RS20560 +0.4 1.4 hypothetical protein compare
BWI76_RS15445 +0.4 1.4 hypothetical protein compare
BWI76_RS06900 +0.4 2.4 phospholipase D compare
BWI76_RS04400 +0.4 2.2 alanyl-tRNA synthetase compare
BWI76_RS21560 +0.4 1.6 DNA repair protein RecN compare
BWI76_RS26745 +0.4 1.6 antibiotic biosynthesis monooxygenase compare
BWI76_RS27660 +0.4 1.7 hypothetical protein compare
BWI76_RS23035 +0.4 2.0 precorrin-2 C(20)-methyltransferase compare
BWI76_RS13290 +0.4 1.7 protocatechuate 3,4-dioxygenase subunit beta compare
BWI76_RS25485 +0.3 0.8 septum formation protein Maf compare
BWI76_RS15275 +0.3 1.7 isomerase compare
BWI76_RS05800 +0.3 1.1 phage transcriptional activator, Ogr/delta compare
BWI76_RS09530 +0.3 0.6 hypothetical protein compare
BWI76_RS16000 +0.3 0.7 multidrug transporter subunit MdtI compare
BWI76_RS06250 +0.3 0.9 alpha-glycosidase compare
BWI76_RS18830 +0.3 1.6 protein NifY compare
BWI76_RS26310 +0.3 2.3 IclR family transcriptional regulator compare
BWI76_RS14110 +0.3 1.5 C-lysozyme inhibitor compare
BWI76_RS00120 +0.3 1.2 glucosamine-6-phosphate deaminase compare
BWI76_RS16920 +0.3 0.8 3-(2,3-dihydroxyphenyl)propionate dioxygenase compare
BWI76_RS17300 +0.3 0.8 tRNA-Tyr compare
BWI76_RS21490 +0.3 2.7 GGDEF domain-containing protein compare
BWI76_RS09335 +0.3 0.7 baseplate assembly protein W compare
BWI76_RS04060 +0.3 1.2 hypothetical protein compare
BWI76_RS12780 +0.3 1.0 hypothetical protein compare
BWI76_RS05655 +0.3 1.1 hypothetical protein compare
BWI76_RS05010 +0.3 1.5 tRNA glutamyl-Q synthetase compare
BWI76_RS24065 +0.3 0.9 deoxyribonuclease I compare
BWI76_RS07475 +0.3 0.6 DNA-binding transcriptional regulator RamA compare
BWI76_RS18855 +0.3 1.2 cysteine desulfurase NifS compare
BWI76_RS21075 +0.3 0.7 membrane protein compare
BWI76_RS04055 +0.3 3.1 GGDEF domain-containing protein compare
BWI76_RS14540 +0.3 1.4 yersiniabactin biosynthetic protein YbtU compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in exudates experiments

For exudates Brachypodium distachyon 27-day exudates across organisms