Experiment set8IT043 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

BHIS with Trimethoprim 0.00625 mM

200 most important genes:

  gene name fitness t score description  
BT4161 -4.1 -3.0 hypothetical protein (NCBI ptt file) compare
BT4610 -3.8 -2.5 RecA (NCBI ptt file) compare
BT4330 -3.5 -6.8 xanthosine permease (NCBI ptt file) compare
BT4386 -2.9 -1.1 hypoxanthine-guanine phosphoribosyltransferase (NCBI ptt file) compare
BT2153 -2.9 -2.0 putative Fe-S oxidoreductases (NCBI ptt file) compare
BT1729 -2.8 -10.0 peptide chain release factor 3 (RF-3) (NCBI ptt file) compare
BT3554 -2.8 -3.3 conserved hypothetical protein (NCBI ptt file) compare
BT0723 -2.8 -1.6 hypothetical protein (NCBI ptt file) compare
BT0180 -2.8 -8.6 5-methyltetrahydrofolate-homocysteine methyltransferase (NCBI ptt file) compare
BT4237 -2.8 -5.9 tRNA pseudouridine synthase A (NCBI ptt file) compare
BT1881 -2.7 -3.1 purine nucleoside phosphorylase I (NCBI ptt file) compare
BT0875 -2.7 -6.0 beta-ureidopropionase (NCBI ptt file) compare
BT0884 -2.7 -5.2 outer membrane efflux protein oprM precursor (NCBI ptt file) compare
BT4649 -2.6 -1.3 hypothetical protein (NCBI ptt file) compare
BT1193 -2.6 -4.5 conserved hypothetical protein (NCBI ptt file) compare
BT0885 -2.4 -2.9 putative cation efflux pump (NCBI ptt file) compare
BT4003 -2.4 -3.1 stationary-phase survival protein SurE (NCBI ptt file) compare
BT2546 -2.4 -2.8 transcriptional regulator (NCBI ptt file) compare
BT0876 -2.4 -1.3 conserved hypothetical protein (NCBI ptt file) compare
BT3368 -2.3 -1.7 putative glycosyltransferase (NCBI ptt file) compare
BT2088 -2.1 -1.8 hypothetical protein (NCBI ptt file) compare
BT0896 -2.1 -1.4 putative patatin-like phospholipase (NCBI ptt file) compare
BT1071 -2.1 -1.5 hypothetical protein (NCBI ptt file) compare
BT0638 -2.1 -5.6 putative methionine aminopeptidase A (NCBI ptt file) compare
BT0737 -2.0 -5.0 formate--tetrahydrofolate ligase (NCBI ptt file) compare
BT3074 -2.0 -4.5 conserved hypothetical protein (NCBI ptt file) compare
BT0722 -1.9 -4.1 conserved hypothetical protein, putative surface protein, function unknown (NCBI ptt file) compare
BT4028 -1.9 -0.7 hypothetical protein (NCBI ptt file) compare
BT4551 -1.9 -1.8 putative GTPase, ThdF family (NCBI ptt file) compare
BT3770 -1.9 -1.2 transcriptional regulator (NCBI ptt file) compare
BT1375 -1.9 -7.1 aspartokinase (NCBI ptt file) compare
BT0085 -1.9 -2.5 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1607 -1.8 -2.8 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase (NCBI ptt file) compare
BT0572 -1.8 -2.1 conserved hypothetical protein (NCBI ptt file) compare
BT4738 -1.8 -6.1 formate acetyltransferase (NCBI ptt file) compare
BT3729 -1.8 -3.1 putative protoporphyrinogen oxidase (NCBI ptt file) compare
BT1112 -1.8 -1.2 transposase (NCBI ptt file) compare
BT4678 -1.7 -5.5 L-serine dehydratase (NCBI ptt file) compare
BT3191 -1.7 -4.7 hypothetical protein (NCBI ptt file) compare
BT2435 -1.7 -2.7 MarR family transcriptional regulator (NCBI ptt file) compare
BT1361 -1.7 -4.2 DNA repair protein recN (Recombination protein N) (NCBI ptt file) compare
p5482_02 -1.7 -4.9 hypothetical protein (NCBI) compare
BT0019 -1.7 -1.9 hypothetical protein (NCBI ptt file) compare
BT1198 -1.7 -2.8 LemA protein (NCBI ptt file) compare
BT4328 -1.7 -1.3 conserved hypothetical protein (NCBI ptt file) compare
BT2170 -1.7 -5.6 hypothetical protein (NCBI ptt file) compare
BT1542 -1.6 -6.3 putative pyridine nucleotide-disulfide oxidoreductase (NCBI ptt file) compare
BT0323 -1.6 -2.0 hypothetical protein (NCBI ptt file) compare
BT0799 -1.6 -1.5 hypothetical protein (NCBI ptt file) compare
BT4574 -1.6 -3.6 conserved hypothetical protein (NCBI ptt file) compare
BT0735 -1.6 -2.5 aspartate decarboxylase AsdA (NCBI ptt file) compare
BT1399 -1.6 -3.3 conserved hypothetical protein (NCBI ptt file) compare
BT1962 -1.6 -1.6 hypothetical protein (NCBI ptt file) compare
BT2173 -1.6 -4.4 hypothetical protein (NCBI ptt file) compare
BT2148 -1.5 -2.3 glycosyltransferase (NCBI ptt file) compare
BT1211 -1.5 -1.9 hypothetical protein (NCBI ptt file) compare
BT0848 -1.5 -1.6 hypothetical protein (NCBI ptt file) compare
BT2003 -1.5 -1.5 putative membrane peptidase (NCBI ptt file) compare
BT0249 -1.5 -1.8 5-methyltetrahydrofolate--homocysteine methyltransferase or methionine synthase (NCBI ptt file) compare
BT4002 -1.5 -1.0 ATPase, ParA family (NCBI ptt file) compare
BT2302 -1.4 -0.9 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT0887 -1.4 -1.9 conserved hypothetical protein (NCBI ptt file) compare
BT2799 -1.4 -3.3 putative PfkB family carbohydrate kinase (NCBI ptt file) compare
BT2732 -1.4 -5.4 hypothetical protein (NCBI ptt file) compare
BT0593 -1.4 -1.8 conserved hypothetical protein (NCBI ptt file) compare
BT1068 -1.4 -2.4 hypothetical protein (NCBI ptt file) compare
BT3371 -1.4 -2.5 putative glycosyltransferase yibD (NCBI ptt file) compare
BT4304 -1.4 -7.6 putative glycosyltransferase (NCBI ptt file) compare
BT2487 -1.4 -1.0 hypothetical protein (NCBI ptt file) compare
BT4562 -1.4 -1.1 hypothetical protein (NCBI ptt file) compare
BT2292 -1.4 -1.9 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT4333 -1.4 -3.7 hypothetical protein (NCBI ptt file) compare
BT2389 -1.4 -0.9 putative transport protein (NCBI ptt file) compare
BT0927 -1.4 -1.6 two-component system sensor histidine kinase (NCBI ptt file) compare
BT3260 -1.4 -2.1 DNA polymerase I (NCBI ptt file) compare
BT3882 -1.4 -1.4 putative DNA binding protein (NCBI ptt file) compare
BT1353 -1.4 -2.4 glycosyltransferase (NCBI ptt file) compare
BT4487 -1.4 -4.3 putative membrane-bound lytic murein transglycosylase (NCBI ptt file) compare
BT4473 -1.4 -5.5 putative purine permease (NCBI ptt file) compare
BT0021 -1.4 -2.8 hypothetical protein (NCBI ptt file) compare
BT4104 -1.3 -7.2 DNA helicase (NCBI ptt file) compare
BT1341 -1.3 -4.0 UDP-glucose 6-dehydrogenase (NCBI ptt file) compare
BT0702 -1.3 -2.1 chloramphenicol acetyltransferase (CAT-III) (NCBI ptt file) compare
BT0820 -1.3 -1.5 conserved hypothetical protein (NCBI ptt file) compare
BT3224 -1.3 -3.1 putative lysine decarboxylase (NCBI ptt file) compare
BT2042 -1.3 -1.5 tRNA and rRNA cytosine-C5-methylase (NCBI ptt file) compare
BT2247 -1.3 -1.3 putative ryanodine receptor (NCBI ptt file) compare
BT1143 -1.3 -2.1 conserved hypothetical protein (NCBI ptt file) compare
BT3223 -1.3 -2.9 hypothetical protein (NCBI ptt file) compare
BT0827 -1.3 -2.2 hypothetical protein (NCBI ptt file) compare
BT0592 -1.3 -2.0 conserved hypothetical protein (NCBI ptt file) compare
BT0683 -1.3 -3.4 alpha-glucosidase (NCBI ptt file) compare
BT1836 -1.3 -4.8 thiamine biosynthesis protein ThiH (NCBI ptt file) compare
BT0858 -1.3 -2.3 conserved hypothetical protein (NCBI ptt file) compare
BT0081 -1.3 -2.0 hypothetical protein (NCBI ptt file) compare
BT4103 -1.2 -2.3 putative Sec-independent protein translocase (NCBI ptt file) compare
BT1117 -1.2 -1.5 conserved hypothetical protein, with a cAMP-binding domain (NCBI ptt file) compare
BT4331 -1.2 -5.3 conserved hypothetical protein (NCBI ptt file) compare
BT2172 -1.2 -7.3 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) compare
BT2696 -1.2 -2.0 hypothetical protein (NCBI ptt file) compare
BT3372 -1.2 -4.5 glycosyltransferase (NCBI ptt file) compare
BT4414 -1.2 -1.6 hypothetical protein (NCBI ptt file) compare
BT0519 -1.2 -3.4 hypothetical protein (NCBI ptt file) compare
BT1062 -1.2 -3.6 hypothetical protein (NCBI ptt file) compare
BT3979 -1.2 -2.4 putative methyltransferase (NCBI ptt file) compare
BT1979 -1.2 -3.0 Meso-diaminopimelate D-dehydrogenase (NCBI ptt file) compare
BT0652 -1.2 -1.1 putative thiamine-phosphate pyrophosphorylase (NCBI ptt file) compare
BT4147 -1.2 -2.0 hypothetical protein (NCBI ptt file) compare
BT3629 -1.2 -3.4 hypothetical protein (NCBI ptt file) compare
BT2423 -1.2 -4.2 K+-transporting ATPase C chain (NCBI ptt file) compare
BT0838 -1.2 -1.7 putative RNA methyltransferase (NCBI ptt file) compare
BT2470 -1.2 -3.6 hypothetical protein (NCBI ptt file) compare
BT2157 -1.2 -2.0 3-keto-alpha-glucoside 1,2-lyase; 3-ketoglucose dehydratase (from data) compare
BT1752 -1.2 -1.5 hypothetical protein (NCBI ptt file) compare
BT1837 -1.2 -2.7 putative GTP-binding protein, putative GTPase (NCBI ptt file) compare
BT0771 -1.2 -3.1 1,4-alpha-glucan branching enzyme (isoamylase or pullulanase type II) (NCBI ptt file) compare
BT0933 -1.2 -2.8 hypothetical protein (NCBI ptt file) compare
BT3757 -1.1 -2.9 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) compare
BT4737 -1.1 -3.2 pyruvate formate-lyase activating enzyme (NCBI ptt file) compare
BT3996 -1.1 -3.9 putative peptidase (NCBI ptt file) compare
BT2843 -1.1 -1.7 integrase (NCBI ptt file) compare
BT1031 -1.1 -2.3 conserved hypothetical protein (NCBI ptt file) compare
BT4208 -1.1 -3.4 phosphohydrolase (NCBI ptt file) compare
BT4255 -1.1 -1.9 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) compare
BT4735 -1.1 -1.2 hypothetical protein (NCBI ptt file) compare
BT4778 -1.1 -1.4 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1242 -1.1 -2.6 ABC transporter ATP-binding protein (NCBI ptt file) compare
BT0089 -1.1 -1.8 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1088 -1.1 -1.3 hypothetical protein (NCBI ptt file) compare
BT1428 -1.1 -1.8 conserved hypothetical protein (NCBI ptt file) compare
BT1274 -1.1 -2.6 L-fuculose-1-phosphate aldolase FucA (4.1.2.17); D-ribulose-1-phosphate aldolase (from data) compare
BT4046 -1.1 -1.1 conserved hypothetical protein (NCBI ptt file) compare
BT1673 -1.1 -3.2 thiamine biosynthesis protein, putative (NCBI ptt file) compare
BT1421 -1.1 -1.5 hypothetical protein (NCBI ptt file) compare
BT4570 -1.1 -1.5 hypothetical protein (NCBI ptt file) compare
BT1894 -1.1 -4.0 TPR-repeat-containing proteins (NCBI ptt file) compare
BT1089 -1.1 -2.6 lipoate-protein ligase B (NCBI ptt file) compare
BT_t17 pseudo-tRNA -1.1 -1.8 tRNA-OTHER (RefSeq) compare
BT0517 -1.1 -2.5 flavodoxin (NCBI ptt file) compare
BT1208 -1.1 -2.3 conserved hypothetical protein (NCBI ptt file) compare
BT2155 -1.1 -1.9 hypothetical protein (NCBI ptt file) compare
BT2418 -1.1 -2.5 hypothetical protein (NCBI ptt file) compare
BT3549 -1.0 -3.6 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) compare
BT2519 -1.0 -2.5 putative glycine cleavage system H protein (NCBI ptt file) compare
BT3220 -1.0 -6.0 TPR-repeat-containing protein (NCBI ptt file) compare
BT2467 -1.0 -2.6 hypothetical protein (NCBI ptt file) compare
BT2021 -1.0 -1.8 conserved hypothetical protein, putative non-specific DNA-binding protein (NCBI ptt file) compare
BT1509 -1.0 -3.0 integrase (NCBI ptt file) compare
BT3431 -1.0 -3.6 DNA repair protein (NCBI ptt file) compare
BT2388 -1.0 -2.7 hypothetical protein (NCBI ptt file) compare
BT2539 -1.0 -1.7 rubredoxin (NCBI ptt file) compare
BT1130 -1.0 -1.4 hypothetical protein (NCBI ptt file) compare
BT4029 -1.0 -2.0 hypothetical protein (NCBI ptt file) compare
BT1081 -1.0 -1.3 recombination protein recR (NCBI ptt file) compare
BT2944 -1.0 -3.2 putative UDP-N-acetylglucosamine 2-epimerase (NCBI ptt file) compare
BT3198 -1.0 -3.5 conserved hypothetical protein (NCBI ptt file) compare
BT0018 -1.0 -1.8 hypothetical protein (NCBI ptt file) compare
BT1577 -1.0 -1.9 pyridoxamine 5'-phosphate oxidase (NCBI ptt file) compare
BT0643 -1.0 -3.8 RNA methyltransferase (NCBI ptt file) compare
BT2406 -1.0 -3.9 putative DNA repair protein (NCBI ptt file) compare
BT3669 -1.0 -2.7 conserved hypothetical protein (NCBI ptt file) compare
BT0374 -1.0 -1.5 conserved hypothetical protein (NCBI ptt file) compare
BT0473 -1.0 -2.6 putative glycosyltransferase (NCBI ptt file) compare
BT3885 -1.0 -3.5 putative phosphohydrolase, Icc family (NCBI ptt file) compare
BT3460 -1.0 -4.0 dGTP triphosphohydrolase (NCBI ptt file) compare
BT4458 -1.0 -3.1 pyridoxine kinase (NCBI ptt file) compare
BT3232 -1.0 -0.8 gluconate 5-dehydrogenase (NCBI ptt file) compare
BT4708 -1.0 -4.3 hypothetical protein (NCBI ptt file) compare
BT3926 -1.0 -1.4 putative peptidase (NCBI ptt file) compare
BT0115 -1.0 -2.0 arsenate reductase (NCBI ptt file) compare
BT2161 -1.0 -1.8 50S ribosomal protein L9 (NCBI ptt file) compare
BT1473 -1.0 -2.3 conserved hypothetical protein (NCBI ptt file) compare
BT1515 -1.0 -1.5 conserved hypothetical protein (NCBI ptt file) compare
BT0977 -1.0 -1.0 hypothetical protein (NCBI ptt file) compare
BT2083 -1.0 -1.3 hypothetical protein (NCBI ptt file) compare
BT1097 -1.0 -2.4 hypothetical protein (NCBI ptt file) compare
BT0747 -1.0 -1.0 putative phosphatidylinositol-4-phosphate 5-kinase (NCBI ptt file) compare
BT1750 -0.9 -3.2 glycine betaine/L-proline transport system permease (NCBI ptt file) compare
BT2840 -0.9 -3.2 O-methyltransferase (NCBI ptt file) compare
BT2863 -0.9 -3.3 putative polysaccharide export protein (NCBI ptt file) compare
BT2788 -0.9 -3.5 chromate transport protein (NCBI ptt file) compare
BT0048 -0.9 -1.9 hypothetical protein (NCBI ptt file) compare
BT0913 -0.9 -2.7 putative Fe-S oxidoreductase (NCBI ptt file) compare
BT1928 -0.9 -1.7 transposase (NCBI ptt file) compare
BT1857 -0.9 -3.8 3-isopropylmalate dehydrogenase (NCBI ptt file) compare
BT3266 -0.9 -4.3 excinuclease ABC subunit C (NCBI ptt file) compare
BT4008 -0.9 -2.5 conserved hypothetical protein (NCBI ptt file) compare
BT1134 -0.9 -1.7 hypothetical protein (NCBI ptt file) compare
BT1480 -0.9 -3.7 hypothetical protein (NCBI ptt file) compare
BT2591 -0.9 -2.0 hypothetical protein (NCBI ptt file) compare
BT0682 -0.9 -2.4 two-component system response regulator (NCBI ptt file) compare
BT0614 -0.9 -3.8 putative tyrosine-protein kinase in cps region (NCBI ptt file) compare
BT1867 -0.9 -1.5 hypothetical protein (NCBI ptt file) compare
BT0561 -0.9 -2.1 conserved hypothetical protein, putative membrane protein (NCBI ptt file) compare
BT1739 -0.9 -4.5 excinuclease ABC subunit A (NCBI ptt file) compare
BT0360 -0.9 -3.9 putative arabinan endo-1,5-alpha-L-arabinosidase (NCBI ptt file) compare
BT3972 -0.9 -2.2 putative NTP pyrophosphohydrolase (NCBI ptt file) compare
BT1519 -0.9 -2.2 N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) compare
BT1589 -0.9 -0.9 hypothetical protein (NCBI ptt file) compare
BT1146 -0.9 -1.6 putative metallo-beta-lactamase (NCBI ptt file) compare


Specific Phenotypes

For 11 genes in this experiment

For stress Trimethoprim in Bacteroides thetaiotaomicron VPI-5482

For stress Trimethoprim across organisms