Experiment set8IT042 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Xylemvessel barcodes T0L2P4

200 most important genes:

  gene name fitness t score description  
Xcc-8004.1906.1 -4.8 -3.3 lipoprotein compare
Xcc-8004.589.1 -4.6 -2.9 hypothetical protein compare
Xcc-8004.713.1 -4.3 -1.2 FIG01210186: hypothetical protein compare
Xcc-8004.5168.1 -4.2 -1.2 hypothetical protein compare
Xcc-8004.3655.1 -4.0 -1.6 FIG01210025: hypothetical protein compare
Xcc-8004.2401.1 -3.9 -2.4 FIG00545367: hypothetical protein compare
Xcc-8004.1200.1 -3.9 -1.6 hypothetical protein compare
Xcc-8004.3590.1 -3.9 -1.5 FIG01211013: hypothetical protein compare
Xcc-8004.4368.1 -3.8 -2.4 FIG01209977: hypothetical protein compare
Xcc-8004.4493.1 -3.6 -5.0 sugar translocase compare
Xcc-8004.3324.1 -3.6 -5.8 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.3728.1 -3.4 -1.6 hypothetical protein compare
Xcc-8004.5038.1 -3.3 -3.3 ABC-type Na+ transport system, ATPase component compare
Xcc-8004.401.1 -3.1 -2.3 FMN reductase (EC 1.5.1.29) compare
Xcc-8004.1654.1 -2.9 -2.0 Mg/Co/Ni transporter MgtE / CBS domain compare
Xcc-8004.5253.1 -2.9 -1.2 hypothetical protein compare
Xcc-8004.4738.1 -2.8 -10.3 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.5140.1 -2.7 -2.6 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Xcc-8004.2865.1 -2.7 -2.2 FIG01210234: hypothetical protein compare
Xcc-8004.2922.1 -2.7 -1.8 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.4427.1 -2.5 -2.3 General secretion pathway protein J compare
Xcc-8004.4510.1 -2.5 -1.6 ATP binding component of ABC-transporter compare
Xcc-8004.1858.1 -2.5 -1.4 FIG01211170: hypothetical protein compare
Xcc-8004.1616.1 -2.4 -1.7 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.3710.1 -2.4 -1.5 hypothetical protein compare
Xcc-8004.1841.1 -2.4 -3.5 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) compare
Xcc-8004.957.1 -2.3 -3.4 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.659.1 -2.3 -3.1 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.4200.1 -2.3 -2.5 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.171.1 -2.3 -1.1 hypothetical protein compare
Xcc-8004.4168.1 -2.2 -4.2 GTP-binding and nucleic acid-binding protein YchF compare
Xcc-8004.1763.1 -2.2 -4.3 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.1359.1 -2.2 -5.6 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.3054.1 -2.1 -1.6 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.5167.1 -2.1 -3.0 L-fuconate dehydratase (EC 4.2.1.68) compare
Xcc-8004.4558.1 -2.1 -2.3 ABC transporter permease compare
Xcc-8004.4752.1 -2.1 -2.0 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.3395.1 -2.1 -2.8 Transcriptional regulator, GntR family compare
Xcc-8004.3376.1 -2.1 -3.3 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Xcc-8004.4241.1 -2.1 -2.4 cytidine and deoxycytidylate deaminase family protein compare
Xcc-8004.1677.1 -2.1 -4.7 FIG01209993: hypothetical protein compare
Xcc-8004.1249.1 -2.0 -4.4 Transcriptional regulator compare
Xcc-8004.4112.1 -2.0 -4.2 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.2552.1 -2.0 -2.2 Mobile element protein compare
Xcc-8004.3752.1 -2.0 -1.7 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.1334.1 -2.0 -1.1 hypothetical protein compare
Xcc-8004.4253.1 -2.0 -2.1 Transcriptional regulator, LysR family compare
Xcc-8004.2182.1 -2.0 -10.5 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.4250.1 -1.9 -2.1 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Xcc-8004.4948.1 -1.9 -1.8 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.5161.1 -1.9 -2.0 FIG01212148: hypothetical protein compare
Xcc-8004.4423.1 -1.9 -1.6 General secretion pathway protein N compare
Xcc-8004.2259.1 -1.9 -4.9 PhbF compare
Xcc-8004.3939.1 -1.9 -2.9 Putative DNA-binding protein in cluster with Type I restriction-modification system compare
Xcc-8004.4233.1 -1.9 -1.9 two-component system sensor protein compare
Xcc-8004.4620.1 -1.8 -6.5 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.2012.1 -1.8 -6.8 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.2910.1 -1.8 -4.2 Regulatory protein, RpfE type compare
Xcc-8004.3041.1 -1.8 -3.2 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.1361.1 -1.8 -1.4 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) compare
Xcc-8004.1838.1 -1.8 -1.4 FIG002958: hypothetical protein compare
Xcc-8004.410.1 -1.8 -1.4 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1562.1 -1.8 -1.9 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Xcc-8004.1466.1 -1.8 -2.7 Histone acetyltransferase HPA2 and related acetyltransferases compare
Xcc-8004.741.1 -1.8 -1.7 hypothetical protein compare
Xcc-8004.622.1 -1.8 -4.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Xcc-8004.5114.1 -1.8 -6.5 ATP-dependent DNA helicase UvrD/PcrA compare
Xcc-8004.318.1 -1.8 -5.7 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.1401.1 -1.8 -4.1 hypothetical protein compare
Xcc-8004.2620.1 -1.8 -6.1 NfuA Fe-S protein maturation compare
Xcc-8004.279.1 -1.8 -2.8 FIG01210420: hypothetical protein compare
Xcc-8004.4000.1 -1.7 -3.1 COG1399 protein, clustered with ribosomal protein L32p compare
Xcc-8004.299.1 -1.7 -2.2 Acyltransferase compare
Xcc-8004.3976.1 -1.7 -4.9 2-methylaconitate cis-trans isomerase compare
Xcc-8004.4373.1 -1.7 -2.7 LppC putative lipoprotein compare
Xcc-8004.165.1 -1.7 -1.1 hypothetical protein compare
Xcc-8004.5021.1 -1.7 -1.4 FIG01211474: hypothetical protein compare
Xcc-8004.3715.1 -1.7 -1.4 FIG01212258: hypothetical protein compare
Xcc-8004.2346.1 -1.6 -1.7 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.1660.1 -1.6 -0.8 PTS system nitrogen-specific IIA component, PtsN compare
Xcc-8004.1809.1 -1.6 -1.3 extracellular serine protease compare
Xcc-8004.3304.1 -1.6 -1.1 FIG01211108: hypothetical protein compare
Xcc-8004.130.1 -1.6 -5.3 hypothetical protein compare
Xcc-8004.1362.1 -1.6 -3.6 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) compare
Xcc-8004.788.1 -1.6 -1.7 Serine peptidase compare
Xcc-8004.1615.1 -1.6 -1.1 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.569.1 -1.6 -3.7 FIG01209918: hypothetical protein compare
Xcc-8004.618.1 -1.6 -1.6 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Xcc-8004.4539.1 -1.6 -5.5 Oligopeptidase A (EC 3.4.24.70) compare
Xcc-8004.2343.1 -1.6 -1.6 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.4737.1 -1.6 -2.9 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.623.1 -1.6 -2.0 Phosphoserine phosphatase compare
Xcc-8004.629.1 -1.6 -2.1 hypothetical protein compare
Xcc-8004.3979.1 -1.6 -6.5 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.4710.1 -1.6 -2.7 FIG01211889: hypothetical protein compare
Xcc-8004.1007.1 -1.6 -0.9 acetylxylan esterase compare
Xcc-8004.1871.1 -1.6 -2.8 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.876.1 -1.6 -1.3 Mobile element protein compare
Xcc-8004.4318.1 -1.5 -2.2 hypothetical protein compare
Xcc-8004.3816.1 -1.5 -6.2 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.3491.1 -1.5 -3.4 probable exported protein YPO1624 compare
Xcc-8004.1959.1 -1.5 -1.6 hypothetical protein compare
Xcc-8004.740.1 -1.5 -2.0 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) compare
Xcc-8004.2060.1 -1.5 -2.1 Mobile element protein compare
Xcc-8004.3346.1 -1.5 -3.2 hypothetical protein compare
Xcc-8004.951.1 -1.5 -0.9 General secretion pathway protein M compare
Xcc-8004.2074.1 -1.5 -3.4 Transcriptional regulator, MerR family compare
Xcc-8004.3726.1 -1.5 -1.6 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.3666.1 -1.5 -2.4 2-hydroxychromene-2-carboxylate isomerase/DsbA-like thioredoxin domain compare
Xcc-8004.1904.1 -1.4 -1.8 two-component system regulatory protein compare
Xcc-8004.2228.1 -1.4 -4.3 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Xcc-8004.2532.1 -1.4 -2.8 hypothetical protein compare
Xcc-8004.4527.1 -1.4 -7.1 ATP-dependent RNA helicase RhlE compare
Xcc-8004.2923.1 -1.4 -7.0 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.5334.1 -1.4 -2.3 hypothetical protein compare
Xcc-8004.1568.1 -1.4 -1.6 Glycine cleavage system H protein compare
Xcc-8004.2294.1 -1.4 -2.4 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Xcc-8004.4945.1 -1.4 -0.7 FIG01210349: hypothetical protein compare
Xcc-8004.3459.1 -1.4 -1.4 FIG01212836: hypothetical protein compare
Xcc-8004.1437.1 -1.4 -4.5 Kup system potassium uptake protein compare
Xcc-8004.736.1 -1.4 -2.2 hypothetical protein compare
Xcc-8004.1468.1 -1.4 -3.2 FIG01210319: hypothetical protein compare
Xcc-8004.270.1 -1.4 -4.1 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.3687.1 -1.4 -4.4 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) compare
Xcc-8004.4065.1 -1.4 -4.2 Exopolyphosphatase (EC 3.6.1.11) compare
Xcc-8004.4768.1 -1.3 -2.5 FIG01210642: hypothetical protein compare
Xcc-8004.4596.1 -1.3 -5.4 hypothetical protein compare
Xcc-8004.601.1 -1.3 -5.2 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.4204.1 -1.3 -1.5 FIG01210014: hypothetical protein compare
Xcc-8004.2096.1 -1.3 -3.1 FIG003671: Metal-dependent hydrolase compare
Xcc-8004.1702.1 -1.3 -3.9 Proteins containing SET domain compare
Xcc-8004.3612.1 -1.3 -0.7 Putative translation initiation inhibitor, yjgF family compare
Xcc-8004.1495.1 -1.3 -1.4 FIG01212489: hypothetical protein compare
Xcc-8004.1978.1 -1.3 -2.8 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.585.1 -1.3 -1.1 Na(+) H(+) antiporter subunit F compare
Xcc-8004.1449.1 -1.3 -3.0 Queuosine Biosynthesis QueE Radical SAM compare
Xcc-8004.797.1 -1.3 -1.0 Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) compare
Xcc-8004.3595.1 -1.3 -1.3 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Xcc-8004.1027.1 -1.3 -1.0 Two-component system sensor protein compare
Xcc-8004.3608.1 -1.3 -1.8 FIG024285: Hypothetical protein compare
Xcc-8004.2921.1 -1.3 -2.0 ferrous iron transport protein compare
Xcc-8004.3647.1 -1.3 -3.4 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.1293.1 -1.3 -3.6 Transcriptional regulator compare
Xcc-8004.337.1 -1.2 -2.4 ATPase, AFG1 family compare
Xcc-8004.5368.1 -1.2 -2.4 FIG01210868: hypothetical protein compare
Xcc-8004.1839.1 -1.2 -1.1 FIG01210863: hypothetical protein compare
Xcc-8004.4633.1 -1.2 -1.1 FIG01210488: hypothetical protein compare
Xcc-8004.1185.1 -1.2 -3.6 BatA (Bacteroides aerotolerance operon) compare
Xcc-8004.2230.1 -1.2 -3.7 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Xcc-8004.183.1 -1.2 -2.5 FIG01211553: hypothetical protein compare
Xcc-8004.5346.1 -1.2 -2.8 hypothetical protein compare
Xcc-8004.2839.1 -1.2 -1.2 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Xcc-8004.319.1 -1.2 -5.5 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Xcc-8004.4375.1 -1.2 -1.8 Putative membrane-bound metal-dependent hydrolases compare
Xcc-8004.1170.1 -1.2 -3.4 Membrane proteins related to metalloendopeptidases compare
Xcc-8004.288.1 -1.2 -0.8 Ferredoxin compare
Xcc-8004.2274.1 -1.2 -3.0 ATP-dependent 23S rRNA helicase DbpA compare
Xcc-8004.3049.1 -1.2 -4.5 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.1108.1 -1.1 -0.7 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Xcc-8004.1436.1 -1.1 -1.0 Holliday junction DNA helicase RuvA compare
Xcc-8004.3853.1 -1.1 -0.9 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Xcc-8004.3982.1 -1.1 -3.7 Propionate catabolism operon regulatory protein PrpR compare
Xcc-8004.5189.1 -1.1 -1.3 FIG01212821: hypothetical protein compare
Xcc-8004.29.1 -1.1 -3.2 Cell wall endopeptidase, family M23/M37 compare
Xcc-8004.3968.1 -1.1 -1.8 Mobile element protein compare
Xcc-8004.4313.1 -1.1 -1.8 hypothetical protein compare
Xcc-8004.4761.1 -1.1 -2.0 FIG01211042: hypothetical protein compare
Xcc-8004.4908.1 -1.1 -1.6 hypothetical protein compare
Xcc-8004.99.1 -1.1 -1.0 FIG01211055: hypothetical protein compare
Xcc-8004.4025.1 -1.1 -5.9 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.3018.1 -1.1 -1.2 hypothetical protein compare
Xcc-8004.409.1 -1.1 -1.5 hypothetical protein compare
Xcc-8004.1118.1 -1.1 -0.8 hypothetical protein compare
Xcc-8004.4984.1 -1.1 -2.0 hypothetical protein compare
Xcc-8004.5084.1 -1.1 -3.4 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Xcc-8004.2229.1 -1.1 -4.9 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Xcc-8004.4747.1 -1.1 -2.8 Protein of unknown function Smg compare
Xcc-8004.3246.1 -1.1 -2.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3103.1 -1.1 -0.9 hypothetical protein compare
Xcc-8004.2357.1 -1.1 -1.9 Segregation and condensation protein B compare
Xcc-8004.290.1 -1.1 -3.1 NAD(P)H steroid dehydrogenase-like protein in alkane synthesis cluster compare
Xcc-8004.2713.1 -1.1 -0.7 Nitrate/nitrite transporter compare
Xcc-8004.5135.1 -1.1 -2.2 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Xcc-8004.178.1 -1.1 -0.8 hypothetical protein compare
Xcc-8004.4529.1 -1.1 -0.9 FIG01210979: hypothetical protein compare
Xcc-8004.3817.1 -1.1 -3.2 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Xcc-8004.480.1 -1.0 -1.8 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) compare
Xcc-8004.4675.1 -1.0 -1.0 FIG01211280: hypothetical protein compare
Xcc-8004.5369.1 -1.0 -3.6 Lipoprotein compare
Xcc-8004.1873.1 -1.0 -1.8 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Xcc-8004.2579.1 -1.0 -1.3 Transcriptional regulator in PFGI-1-like cluster compare
Xcc-8004.791.1 -1.0 -1.9 FIG01211375: hypothetical protein compare
Xcc-8004.2356.1 -1.0 -2.5 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
Xcc-8004.4732.1 -1.0 -0.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.280.1 -1.0 -2.6 3-oxoacyl-[ACP] synthase III in alkane synthesis cluster compare
Xcc-8004.2449.1 -1.0 -2.4 Glucokinase (EC 2.7.1.2) compare
Xcc-8004.4327.1 -1.0 -0.6 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4789.1 -1.0 -2.6 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Xcc-8004.4391.1 -1.0 -2.6 hypothetical protein compare
Xcc-8004.2128.1 -1.0 -2.3 Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster compare


Specific Phenotypes

For 1 genes in this experiment

For in planta xylem Plant=Cauliflower; Treatment=None; Sample=xylem; Collection=Direct; Time=0_days in Xanthomonas campestris pv. campestris strain 8004

For in planta xylem Plant=Cauliflower; Treatment=None; Sample=xylem; Collection=Direct; Time=0_days across organisms