Experiment set8IT042 for Pseudomonas syringae pv. syringae B728a

Compare to:

library passed through aphids in food, 24 hours

200 most important genes:

  gene name fitness t score description  
Psyr_1269 -3.8 -6.8 phosphoribosylformylglycinamidine synthase compare
Psyr_4270 -3.1 -8.6 serine hydroxymethyltransferase compare
Psyr_4407 -3.1 -4.0 phosphoribosylamine--glycine ligase compare
Psyr_1668 -3.0 -8.1 amidophosphoribosyltransferase compare
Psyr_1247 -2.8 -3.5 conserved hypothetical protein compare
Psyr_4203 -2.2 -1.5 SsrA-binding protein compare
Psyr_3433 -2.1 -5.1 Protein-glutamate methylesterase compare
Psyr_4754 -2.1 -3.6 16S rRNA m(2)G-966 methyltransferase compare
Psyr_3445 -1.9 -6.8 Flagellar biosynthesis protein, FliO compare
Psyr_3458 -1.8 -2.8 Flagellar hook-basal body complex protein FliE compare
Psyr_3281 -1.8 -4.1 Glycoside hydrolase, family 3, N-terminal compare
Psyr_3447 -1.7 -5.1 Flagellar motor switch protein FliM compare
Psyr_3475 -1.7 -4.4 Flagellar basal body rod protein:Protein of unknown function DUF1078 compare
Psyr_3473 -1.7 -3.3 Flagellar P-ring protein compare
Psyr_3481 -1.6 -7.5 Flagellar basal-body rod protein FlgB compare
Psyr_3449 -1.6 -5.2 Flagellar hook-length control protein compare
Psyr_5067 -1.6 -5.2 conserved hypothetical protein compare
Psyr_3427 -1.6 -3.5 conserved hypothetical protein compare
Psyr_3439 -1.6 -6.1 GTP-binding signal recognition particle SRP54, G-domain protein compare
Psyr_3487 -1.6 -8.4 flagellar protein FlgA compare
Psyr_4567 -1.6 -6.9 Protein of unknown function UPF0075 compare
Psyr_3474 -1.6 -9.6 Flagellar L-ring protein compare
Psyr_0565 -1.5 -5.9 Protein of unknown function UPF0126 compare
Psyr_3472 -1.5 -10.0 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase compare
Psyr_0377 -1.5 -6.7 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_3443 -1.5 -5.2 Flagellar biosynthesis protein FliQ compare
Psyr_3489 -1.5 -3.9 FlgN compare
Psyr_3440 -1.5 -7.6 Flagellar biosynthesis protein FlhA compare
Psyr_3478 -1.5 -10.6 Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE compare
Psyr_3442 -1.5 -7.4 Flagellar biosynthesis protein FliR compare
Psyr_3893 -1.5 -7.7 OmpA/MotB compare
Psyr_0487 -1.5 -2.8 glutathione synthase compare
Psyr_1678 -1.4 -2.1 Hypothetical protein compare
Psyr_3432 -1.4 -3.6 MotA/TolQ/ExbB proton channel compare
Psyr_3690 -1.4 -5.0 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase compare
Psyr_3298 -1.4 -5.4 conserved hypothetical protein compare
Psyr_3437 -1.4 -8.0 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG compare
Psyr_0378 -1.4 -7.5 Glycosyl transferase, family 2 compare
Psyr_3464 -1.4 -8.3 Flagellar hook-associated protein 2, N-terminal:Flagellar hook-associated 2, C-terminal:Flagellin hook IN compare
Psyr_3457 -1.4 -6.8 Flagellar FliF M-ring protein compare
Psyr_3456 -1.4 -7.8 Flagellar motor switch protein FliG compare
Psyr_3454 -1.4 -9.3 ATPase FliI/YscN compare
Psyr_3441 -1.4 -9.4 Flagellar biosynthetic protein FlhB compare
Psyr_0402 -1.4 -11.1 Peptidoglycan glycosyltransferase compare
Psyr_3471 -1.3 -9.0 Flagellar basal body rod protein:Protein of unknown function DUF1078 compare
Psyr_3455 -1.3 -5.8 Flagellar assembly protein FliH compare
Psyr_4882 -1.3 -7.4 protein translocase subunit secB compare
Psyr_0014 -1.3 -4.0 lipid A biosynthesis acyltransferase compare
Psyr_3470 -1.3 -9.1 Flagellin, N-terminal compare
Psyr_3453 -1.2 -6.1 flagellar protein FliJ, putative compare
Psyr_3461 -1.2 -8.3 Helix-turn-helix, Fis-type compare
Psyr_3462 -1.2 -2.0 conserved hypothetical protein compare
Psyr_3428 -1.2 -6.2 CheW-like protein compare
Psyr_3299 -1.2 -4.5 two component transcriptional regulator, LuxR family compare
Psyr_3947 -1.2 -2.8 Methyltransferase, putative compare
Psyr_3463 -1.2 -3.1 Flagellar protein FliS compare
Psyr_1941 -1.2 -2.8 ATP-binding region, ATPase-like:Histidine kinase compare
Psyr_4473 -1.2 -6.1 OmpW compare
Psyr_3287 -1.2 -1.3 DNA topoisomerase I compare
Psyr_5133 -1.1 -3.5 tRNA modification GTPase trmE compare
Psyr_0826 -1.1 -5.8 glucose-6-phosphate isomerase compare
Psyr_3485 -1.1 -6.5 MCP methyltransferase, CheR-type compare
Psyr_3436 -1.1 -4.1 Response regulator receiver compare
Psyr_4991 -1.1 -2.0 hypothetical protein compare
Psyr_1373 -1.1 -2.3 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_3469 -1.1 -7.8 Glycosyl transferase, family 2 compare
Psyr_4460 -1.1 -2.1 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_4623 -1.1 -7.6 Aminoglycoside phosphotransferase compare
Psyr_1633 -1.1 -2.3 MotA/TolQ/ExbB proton channel compare
Psyr_0255 -1.1 -1.5 glutamate-cysteine ligase compare
Psyr_3476 -1.1 -1.4 Flagellar basal body rod protein:Protein of unknown function DUF1078 compare
Psyr_3434 -1.1 -5.3 CheW-like protein:ATP-binding region, ATPase-like:Signal transducing histidine kinase, homodimeric:Hpt compare
Psyr_0215 -1.1 -5.7 Exodeoxyribonuclease III xth compare
Psyr_5132 -1.0 -2.3 Glucose-inhibited division protein A subfamily compare
Psyr_3446 -1.0 -2.1 Surface presentation of antigens (SPOA) protein compare
Psyr_4194 -1.0 -2.7 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_3425 -1.0 -2.6 Cyclic nucleotide-binding:Bacterial regulatory protein, Crp compare
Psyr_3431 -1.0 -4.6 OmpA/MotB compare
Psyr_4622 -1.0 -3.4 Nucleotidyl transferase compare
Psyr_1843 -1.0 -3.0 Protein of unknown function DUF1311 compare
Psyr_2765 -1.0 -3.1 conserved domain protein compare
Psyr_2823 -1.0 -1.3 hypothetical protein compare
Psyr_3480 -1.0 -2.0 Flagellar basal-body rod protein FlgC compare
Psyr_0835 -1.0 -4.2 transcriptional regulator, TraR/DksA family compare
Psyr_2446 -1.0 -4.8 MCP methyltransferase, CheR-type compare
Psyr_0025 -1.0 -1.8 shikimate dehydrogenase compare
Psyr_4078 -1.0 -7.5 AmpG-related permease compare
Psyr_3479 -1.0 -3.3 Flagellar hook capping protein compare
Psyr_1903 -1.0 -3.3 conserved hypothetical protein compare
Psyr_0535 -1.0 -2.6 toluene tolerance protein, putative compare
Psyr_3466 -1.0 -2.7 Flagellin, C-terminal:Flagellin, N-terminal compare
Psyr_0822 -0.9 -1.4 1-phosphofructokinase compare
Psyr_3193 -0.9 -1.9 Transcription factor jumonji, jmjC compare
Psyr_4115 -0.9 -1.6 phosphoheptose isomerase compare
Psyr_3676 -0.9 -3.0 adenosylcobyric acid synthase (glutamine-hydrolysing) compare
Psyr_3886 -0.9 -1.4 methionyl-tRNA synthetase compare
Psyr_4733 -0.9 -5.1 betaine aldehyde dehydrogenase compare
Psyr_5135 -0.9 -1.3 Protein of unknown function DUF37 compare
Psyr_3293 -0.9 -2.4 UspA compare
Psyr_2808 -0.9 -1.9 hypothetical protein compare
Psyr_3198 -0.9 -1.9 NADH dehydrogenase subunit B compare
Psyr_3597 -0.9 -1.6 ABC transporter compare
Psyr_2900 -0.9 -2.4 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase compare
Psyr_3610 -0.8 -1.7 GAF compare
Psyr_3419 -0.8 -2.7 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_5036 -0.8 -2.9 Response regulator receiver compare
Psyr_0849 -0.8 -3.0 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_4158 -0.8 -5.3 conserved hypothetical protein compare
Psyr_0680 -0.8 -2.4 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
Psyr_0838 -0.7 -2.6 Rieske [2Fe-2S] region compare
Psyr_4116 -0.7 -2.1 Transport-associated protein compare
Psyr_2540 -0.7 -1.4 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_3020 -0.7 -1.9 precorrin-4 C11-methyltransferase compare
Psyr_1910 -0.7 -2.9 VacJ-like lipoprotein compare
Psyr_1245 -0.7 -4.1 23S rRNA m(2)A-2503 methyltransferase compare
Psyr_0579 -0.7 -4.7 RNAse R compare
Psyr_3013 -0.7 -0.9 magnesium chelatase subunit ChlD compare
Psyr_3199 -0.7 -2.1 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_3692 -0.7 -1.7 conserved hypothetical protein compare
Psyr_0278 -0.7 -3.9 ABC-3 compare
Psyr_RNA61 -0.7 -2.1 tRNA-Gly compare
Psyr_3611 -0.7 -3.7 Protein of unknown function DUF815 compare
Psyr_3435 -0.7 -3.2 chemotaxis phosphatase, CheZ compare
Psyr_3296 -0.7 -2.3 MOSC:MOSC, N-terminal beta barrel compare
Psyr_0575 -0.7 -1.8 protease FtsH subunit HflC compare
Psyr_3698 -0.7 -2.4 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt compare
Psyr_3181 -0.6 -2.9 Arginyltransferase compare
Psyr_1614 -0.6 -1.9 lipid A biosynthesis acyltransferase compare
Psyr_1410 -0.6 -1.9 Holliday junction DNA helicase RuvB compare
Psyr_2476 -0.6 -2.3 Exodeoxyribonuclease III compare
Psyr_3262 -0.6 -1.6 dnaK suppressor protein, putative compare
Psyr_0561 -0.6 -4.8 chemotaxis motA protein compare
Psyr_5043 -0.6 -3.6 Thioesterase superfamily compare
Psyr_3015 -0.6 -3.2 cobaltochelatase CobN subunit compare
Psyr_2200 -0.6 -1.4 UreE urease accessory, N-terminal compare
Psyr_1800 -0.6 -1.9 transcriptional regulator, LysR family compare
Psyr_4141 -0.6 -2.3 ABC transporter compare
Psyr_2552 -0.6 -2.4 cyclase/dehydrase compare
Psyr_1613 -0.6 -0.8 septum site-determining protein MinC compare
Psyr_3678 -0.6 -3.3 adenosylcobinamide-phosphate synthase compare
Psyr_1661 -0.6 -4.6 conserved hypothetical protein compare
Psyr_1556 -0.6 -0.8 hypothetical protein compare
Psyr_2347 -0.6 -1.0 hypothetical protein compare
Psyr_0486 -0.6 -4.4 TonB, C-terminal compare
Psyr_1988 -0.6 -2.2 2-keto-3-deoxy-phosphogalactonate aldolase compare
Psyr_2464 -0.6 -3.4 methionine synthase (B12-dependent) compare
Psyr_1044 -0.6 -3.9 transcriptional regulator, LysR family compare
Psyr_4884 -0.6 -2.7 Rhodanese-like protein compare
Psyr_4336 -0.6 -2.0 ribosomal large subunit pseudouridine synthase E compare
Psyr_4750 -0.6 -2.1 cell division ATP-binding protein FtsE compare
Psyr_0531 -0.6 -1.4 LmbE-like protein compare
Psyr_2870 -0.6 -2.2 CDS compare
Psyr_3620 -0.6 -1.3 hypothetical protein compare
Psyr_1408 -0.6 -1.0 Holliday junction endonuclease RuvC compare
Psyr_3808 -0.6 -0.7 hypothetical protein compare
Psyr_3680 -0.6 -2.3 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase compare
Psyr_2360 -0.6 -1.2 CBS compare
Psyr_3644 -0.6 -1.8 prephenate dehydrogenase compare
Psyr_3208 -0.5 -1.1 NADH dehydrogenase subunit M compare
Psyr_2985 -0.5 -1.2 DNA-N1-methyladenine dioxygenase compare
Psyr_4001 -0.5 -1.6 conserved domain protein compare
Psyr_2059 -0.5 -1.4 Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer compare
Psyr_4113 -0.5 -3.9 LppC putative lipoprotein compare
Psyr_0200 -0.5 -4.0 conserved hypothetical protein compare
Psyr_3005 -0.5 -1.3 3-oxoadipate enol-lactonase compare
Psyr_3133 -0.5 -1.3 Amidohydrolase 2 compare
Psyr_2838 -0.5 -1.3 conserved hypothetical protein compare
Psyr_4498 -0.5 -0.8 outer membrane transport energization protein ExbD compare
Psyr_2894 -0.5 -1.5 conserved hypothetical protein compare
Psyr_1411 -0.5 -2.6 4-hydroxybenzoyl-CoA thioesterase compare
Psyr_4732 -0.5 -4.4 choline dehydrogenase compare
Psyr_2641 -0.5 -1.4 hypothetical protein compare
Psyr_2890 -0.5 -2.1 amino acid ABC transporter ATP-binding protein, PAAT family compare
Psyr_1581 -0.5 -1.8 conserved hypothetical protein compare
Psyr_3297 -0.5 -3.2 CheW protein compare
Psyr_1588 -0.5 -1.5 Putative exonuclease, RdgC compare
Psyr_1198 -0.5 -1.7 type III secretion protein HrpF compare
Psyr_0796 -0.5 -2.7 type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A compare
Psyr_3460 -0.5 -2.1 PAS/PAC sensor signal transduction histidine kinase compare
Psyr_2774 -0.5 -1.1 Bacteriophage lambda tail assembly I compare
Psyr_0529 -0.5 -1.7 Glycosyl transferase, group 1 compare
Psyr_4420 -0.5 -1.8 precorrin-6A reductase compare
Psyr_0562 -0.5 -2.8 OmpA/MotB compare
Psyr_3601 -0.5 -1.6 conserved hypothetical protein compare
Psyr_3406 -0.5 -2.4 PAS compare
Psyr_4118 -0.5 -2.5 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_3324 -0.5 -2.4 transcriptional regulator, TetR family compare
Psyr_3688 -0.5 -1.6 conserved hypothetical protein compare
Psyr_4512 -0.5 -1.8 putative phage-related protein compare
Psyr_3667 -0.5 -1.2 conserved hypothetical protein compare
Psyr_2088 -0.5 -1.5 2-methylaconitate cis-trans isomerase compare
Psyr_0403 -0.5 -3.7 Type IV pilus assembly protein PilM compare
Psyr_1935 -0.5 -1.7 Protein of unknown function DUF796 compare
Psyr_3448 -0.5 -2.2 Flagellar basal body-associated protein FliL compare
Psyr_5030 -0.5 -2.1 chorismate lyase compare
Psyr_4634 -0.5 -0.9 Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein compare
Psyr_3691 -0.5 -2.7 conserved hypothetical protein compare
Psyr_2395 -0.5 -2.3 transcriptional regulator, LysR family compare
Psyr_4887 -0.5 -3.5 Peptidase S41A, C-terminal protease compare
Psyr_0410 -0.5 -3.5 conserved hypothetical protein compare


Specific Phenotypes

For 20 genes in this experiment