Experiment set8IT042 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS06930 +1.3 9.3 iron export ABC transporter permease subunit FetB compare
BWI76_RS06925 +1.2 9.7 iron ABC transporter ATP-binding protein FetA compare
BWI76_RS09635 +1.2 2.1 amino acid ABC transporter ATP-binding protein compare
BWI76_RS01885 +1.2 2.8 CsbD family protein compare
BWI76_RS09640 +1.2 5.3 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS18915 +1.1 1.7 NAD(P)-dependent oxidoreductase compare
BWI76_RS04270 +1.0 3.6 transaldolase compare
BWI76_RS09940 +1.0 1.6 paraquat-inducible protein B compare
BWI76_RS13370 +0.9 2.7 hypothetical protein compare
BWI76_RS01065 +0.9 3.8 ATP-dependent RNA helicase RhlB compare
BWI76_RS11300 +0.9 1.7 cupin compare
BWI76_RS08765 +0.9 3.6 8-amino-7-oxononanoate synthase compare
BWI76_RS10955 +0.8 2.5 hypothetical protein compare
BWI76_RS17770 +0.8 1.3 isomerase/hydrolase compare
BWI76_RS03045 +0.8 1.8 hypothetical protein compare
BWI76_RS21325 +0.8 1.5 hypothetical protein compare
BWI76_RS10530 +0.8 2.6 GntR family transcriptional regulator with compare
BWI76_RS07740 +0.8 2.4 Fe2+-enterobactin ABC transporter substrate-binding protein compare
BWI76_RS08500 +0.8 2.5 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS12450 +0.8 3.9 phage shock protein PspA compare
BWI76_RS20035 +0.8 2.5 hypothetical protein compare
BWI76_RS13915 +0.7 4.2 magnesium transport protein MgtC compare
BWI76_RS15435 +0.7 1.6 hypothetical protein compare
BWI76_RS18430 +0.7 1.5 hypothetical protein compare
BWI76_RS16425 +0.7 2.9 hypothetical protein compare
BWI76_RS17300 +0.7 1.3 tRNA-Tyr compare
BWI76_RS23885 +0.7 1.8 2-octaprenylphenol hydroxylase compare
BWI76_RS09305 +0.7 2.4 hypothetical protein compare
BWI76_RS14320 +0.7 1.5 hypothetical protein compare
BWI76_RS17860 +0.7 2.1 YoaH family protein compare
BWI76_RS20360 +0.7 1.3 cell division protein DedD compare
BWI76_RS20180 +0.7 3.2 NADH-quinone oxidoreductase subunit C/D compare
BWI76_RS00380 +0.7 4.5 oxygen-independent coproporphyrinogen III oxidase compare
BWI76_RS17645 +0.7 1.8 hypothetical protein compare
BWI76_RS21345 +0.7 1.3 sigma-E factor regulatory protein RseB compare
BWI76_RS19575 +0.7 3.1 maleylacetoacetate isomerase compare
BWI76_RS09455 +0.7 2.8 YbjN domain-containing protein compare
BWI76_RS12750 +0.7 3.6 hypothetical protein compare
BWI76_RS11440 +0.7 1.3 hypothetical protein compare
BWI76_RS13150 +0.7 2.2 carnitine operon protein CaiE compare
BWI76_RS19330 +0.7 1.1 HAD family hydrolase compare
BWI76_RS23050 +0.7 1.7 cobalt-precorrin-3B C(17)-methyltransferase compare
BWI76_RS06680 +0.6 1.0 hypothetical protein compare
BWI76_RS14970 +0.6 1.6 pyrroline-5-carboxylate reductase compare
BWI76_RS19310 +0.6 2.3 ABC transporter permease compare
BWI76_RS21980 +0.6 1.7 hypothetical protein compare
BWI76_RS13250 +0.6 1.2 cytochrome b561 compare
BWI76_RS09625 +0.6 1.5 hypothetical protein compare
BWI76_RS20880 +0.6 1.6 esterase compare
BWI76_RS13820 +0.6 1.1 hypothetical protein compare
BWI76_RS20730 +0.6 1.8 hypothetical protein compare
BWI76_RS21810 +0.6 1.6 universal stress protein compare
BWI76_RS19495 +0.6 1.2 ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein compare
BWI76_RS21310 +0.6 1.0 DNA repair protein RecO compare
BWI76_RS16510 +0.6 1.9 transcriptional repressor PurR compare
BWI76_RS11525 +0.6 1.1 HNH endonuclease compare
BWI76_RS25915 +0.6 2.8 protein SlyX compare
BWI76_RS11110 +0.6 1.4 cell division protein YceG compare
BWI76_RS26425 +0.6 4.1 zinc/cadmium/mercury/lead-transporting ATPase compare
BWI76_RS11900 +0.6 1.1 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
BWI76_RS00440 +0.6 1.5 CopG family transcriptional regulator compare
BWI76_RS10055 +0.6 2.5 AraC family transcriptional regulator compare
BWI76_RS22855 +0.6 1.4 hypothetical protein compare
BWI76_RS07530 +0.6 1.4 binding-protein-dependent transport system inner membrane protein compare
BWI76_RS15290 +0.6 1.1 transcriptional regulator compare
BWI76_RS14415 +0.6 1.1 transcriptional regulator, TetR family protein compare
BWI76_RS07995 +0.6 2.6 twin-arginine translocase subunit TatA compare
BWI76_RS26455 +0.6 1.6 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS20190 +0.6 3.5 NADH-quinone oxidoreductase subunit A compare
BWI76_RS00740 +0.6 3.5 ribonuclease E activity regulator RraA compare
BWI76_RS15300 +0.6 2.5 multiple antibiotic resistance regulatory periplasmic protein MarB compare
BWI76_RS04155 +0.6 3.3 membrane protein compare
BWI76_RS03660 +0.6 2.0 hypothetical protein compare
BWI76_RS00565 +0.6 2.0 branched-chain amino acid transport compare
BWI76_RS15760 +0.6 1.2 hypothetical protein compare
BWI76_RS01585 +0.5 2.5 transcriptional regulator compare
BWI76_RS18810 +0.5 2.6 nitrogenase iron protein compare
BWI76_RS13490 +0.5 2.7 pyrimidine-specific ribonucleoside hydrolase RihA compare
BWI76_RS00375 +0.5 1.2 hypothetical protein compare
BWI76_RS14505 +0.5 1.1 salicylate synthase Irp9 compare
BWI76_RS17720 +0.5 0.7 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS07475 +0.5 0.9 DNA-binding transcriptional regulator RamA compare
BWI76_RS12895 +0.5 1.3 hypothetical protein compare
BWI76_RS06490 +0.5 2.6 cytochrome ubiquinol oxidase subunit I compare
BWI76_RS09960 +0.5 1.1 Lon protease compare
BWI76_RS00025 +0.5 0.8 hypothetical protein compare
BWI76_RS01000 +0.5 1.5 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS14325 +0.5 1.5 maturase compare
BWI76_RS08535 +0.5 1.2 translocation protein TolB compare
BWI76_RS09560 +0.5 1.2 DoxX family membrane protein compare
BWI76_RS10815 +0.5 2.3 iron permease compare
BWI76_RS17390 +0.5 1.3 DsrE family protein compare
BWI76_RS24070 +0.5 2.2 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
BWI76_RS20230 +0.5 1.3 hypothetical protein compare
BWI76_RS15115 +0.5 2.4 MFS transporter compare
BWI76_RS26405 +0.5 0.6 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS11635 +0.5 1.3 ABC transporter compare
BWI76_RS05810 +0.5 1.1 hypothetical protein compare
BWI76_RS02635 +0.5 1.8 3-keto-L-gulonate-6-phosphate decarboxylase compare
BWI76_RS12855 +0.5 1.4 enamine deaminase RidA compare
BWI76_RS18610 +0.5 1.9 transcriptional regulator LysR compare
BWI76_RS24900 +0.5 0.7 DeoR family transcriptional regulator compare
BWI76_RS12405 +0.5 2.1 diguanylate phosphodiesterase compare
BWI76_RS14300 +0.5 1.5 hypothetical protein compare
BWI76_RS10560 +0.5 1.8 gamma-glutamyltransferase compare
BWI76_RS18175 +0.5 0.9 hydrolase compare
BWI76_RS14770 +0.5 1.0 PTS IIA 2 domain protein compare
BWI76_RS08495 +0.5 2.2 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS14230 +0.5 2.4 flavin monoamine oxidase family protein compare
BWI76_RS14980 +0.5 1.3 hypothetical protein compare
BWI76_RS24720 +0.5 0.9 hypothetical protein compare
BWI76_RS17165 +0.5 2.1 hypothetical protein compare
BWI76_RS11815 +0.5 1.3 hypothetical protein compare
BWI76_RS03560 +0.5 2.5 propanediol utilization phosphotransacylase compare
BWI76_RS17370 +0.5 1.5 nitrate transporter NasD compare
BWI76_RS20675 +0.5 2.7 GMP synthase compare
BWI76_RS25690 +0.5 2.8 large-conductance mechanosensitive channel compare
BWI76_RS09335 +0.5 1.0 baseplate assembly protein W compare
BWI76_RS09220 +0.5 2.0 hypothetical protein compare
BWI76_RS05965 +0.5 1.0 hypothetical protein compare
BWI76_RS14240 +0.5 1.8 thiol reductase thioredoxin compare
BWI76_RS14680 +0.5 1.0 SefF compare
BWI76_RS11680 +0.5 1.0 succinylglutamate-semialdehyde dehydrogenase compare
BWI76_RS15225 +0.5 1.3 DeoR family transcriptional regulator compare
BWI76_RS20565 +0.5 1.5 hypothetical protein compare
BWI76_RS03665 +0.5 1.3 ABC transporter ATP-binding protein compare
BWI76_RS21130 +0.5 1.1 Fe-S assembly protein IscX compare
BWI76_RS03580 +0.5 3.0 iron-containing alcohol dehydrogenase compare
BWI76_RS19805 +0.5 2.0 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS11600 +0.5 2.0 selenide, water dikinase SelD compare
BWI76_RS00720 +0.5 1.3 DNA-binding response regulator compare
BWI76_RS06335 +0.5 1.8 nucleoside-specific channel-forming protein Tsx compare
BWI76_RS08980 +0.5 0.8 DNA starvation/stationary phase protection protein compare
BWI76_RS16455 +0.5 1.2 superoxide dismutase compare
BWI76_RS26980 +0.5 1.3 cold-shock protein compare
BWI76_RS11810 +0.5 0.9 outer membrane protein OmpW compare
BWI76_RS27635 +0.5 2.3 AraC family transcriptional regulator compare
BWI76_RS10825 +0.5 2.1 deferrochelatase/peroxidase EfeB compare
BWI76_RS24390 +0.5 1.1 hypothetical protein compare
BWI76_RS20430 +0.5 1.3 penicillin-insensitive murein endopeptidase compare
BWI76_RS08330 +0.4 1.0 hypothetical protein compare
BWI76_RS13560 +0.4 0.7 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS27365 +0.4 1.7 hypothetical protein compare
BWI76_RS10805 +0.4 1.6 hypothetical protein compare
BWI76_RS24615 +0.4 2.6 siderophore-interacting protein compare
BWI76_RS11790 +0.4 1.5 acyl-CoA thioesterase compare
BWI76_RS15730 +0.4 1.6 hypothetical protein compare
BWI76_RS12870 +0.4 1.3 putative phytanoyl-CoA dioxygenase compare
BWI76_RS26260 +0.4 2.0 hypothetical protein compare
BWI76_RS25855 +0.4 2.1 bacterioferritin compare
BWI76_RS13405 +0.4 1.5 spermidine/putrescine ABC transporter substrate-binding protein compare
BWI76_RS19695 +0.4 1.4 membrane protein compare
BWI76_RS27665 +0.4 2.6 phosphatase compare
BWI76_RS16605 +0.4 2.5 hypothetical protein compare
BWI76_RS11200 +0.4 0.9 transpeptidase compare
BWI76_RS18355 +0.4 1.7 amino acid ABC transporter permease compare
BWI76_RS12550 +0.4 1.3 hypothetical protein compare
BWI76_RS18050 +0.4 2.1 hypothetical protein compare
BWI76_RS18375 +0.4 1.5 hypothetical protein compare
BWI76_RS25365 +0.4 3.3 serine endoprotease DegQ compare
BWI76_RS21090 +0.4 1.7 cytoskeletal protein RodZ compare
BWI76_RS01190 +0.4 1.7 iron donor protein CyaY compare
BWI76_RS16270 +0.4 1.5 fumarate hydratase, class II compare
BWI76_RS11240 +0.4 1.2 spermidine/putrescine ABC transporter substrate-binding protein PotD compare
BWI76_RS16215 +0.4 2.5 hypothetical protein compare
BWI76_RS14310 +0.4 2.4 hypothetical protein compare
BWI76_RS08280 +0.4 1.1 acyl-CoA esterase compare
BWI76_RS12575 +0.4 1.7 FAD-dependent oxidoreductase compare
BWI76_RS18385 +0.4 0.8 hypothetical protein compare
BWI76_RS02680 +0.4 1.2 EamA family transporter compare
BWI76_RS04360 +0.4 1.3 ribonucleoside hydrolase RihC compare
BWI76_RS01895 +0.4 1.0 cupin compare
BWI76_RS16595 +0.4 1.5 hypothetical protein compare
BWI76_RS23150 +0.4 2.6 propanediol utilization phosphotransacylase compare
BWI76_RS07385 +0.4 2.0 short-chain dehydrogenase/reductase SDR compare
BWI76_RS11195 +0.4 1.6 multiple stress resistance protein BhsA compare
BWI76_RS01690 +0.4 1.7 membrane protein compare
BWI76_RS25700 +0.4 2.3 heavy metal-responsive transcriptional regulator compare
BWI76_RS03610 +0.4 1.4 hypothetical protein compare
BWI76_RS12875 +0.4 1.9 bifunctional deaminase-reductase compare
BWI76_RS15620 +0.4 1.0 hypothetical protein compare
BWI76_RS00335 +0.4 2.0 hypothetical protein compare
BWI76_RS10685 +0.4 2.2 LysR family transcriptional regulator compare
BWI76_RS11640 +0.4 2.4 ABC transporter membrane protein compare
BWI76_RS11230 +0.4 1.1 NAD-dependent deacylase compare
BWI76_RS12555 +0.4 2.1 hypothetical protein compare
BWI76_RS08455 +0.4 1.4 glutaminase compare
BWI76_RS15660 +0.4 0.6 hypothetical protein compare
BWI76_RS04370 +0.4 3.2 FldA family protein compare
BWI76_RS23255 +0.4 1.5 prepilin-type cleavage/methylation domain-containing protein compare
BWI76_RS16610 +0.4 1.6 hypothetical protein compare
BWI76_RS27200 +0.4 1.5 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL compare
BWI76_RS16685 +0.4 2.0 peptide ABC transporter permease compare
BWI76_RS01540 +0.4 1.4 thiamine biosynthesis protein ThiS compare
BWI76_RS22430 +0.4 2.0 manganese/iron transporter ATP-binding protein compare
BWI76_RS00745 +0.4 2.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
BWI76_RS14065 +0.4 1.0 hypothetical protein compare
BWI76_RS10490 +0.4 1.7 vanillate O-demethylase oxygenase subunit compare
BWI76_RS27340 +0.4 2.0 hypothetical protein compare
BWI76_RS12500 +0.4 1.3 dipeptide epimerase compare


Specific Phenotypes

For 2 genes in this experiment

For exudates Brachypodium distachyon 13-day exudates in Klebsiella michiganensis M5al

For exudates Brachypodium distachyon 13-day exudates across organisms