Experiment set8IT041 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x

200 most important genes:

  gene name fitness t score description  
BWI76_RS23220 -9.4 -6.5 amino-acid N-acetyltransferase compare
BWI76_RS04675 -9.3 -6.4 3-isopropylmalate dehydrogenase compare
BWI76_RS00850 -9.0 -11.6 acetylglutamate kinase compare
BWI76_RS20350 -8.8 -6.6 amidophosphoribosyltransferase compare
BWI76_RS23920 -8.4 -5.8 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS20895 -8.4 -5.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS04470 -8.1 -7.9 carbamoyl phosphate synthase large subunit compare
BWI76_RS02995 -8.0 -7.8 aspartate carbamoyltransferase compare
BWI76_RS00805 -8.0 -7.2 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS00785 -7.9 -5.5 cystathionine gamma-synthase compare
BWI76_RS00990 -7.9 -9.4 ketol-acid reductoisomerase compare
BWI76_RS18930 -7.8 -4.5 histidinol-phosphate transaminase compare
BWI76_RS05835 -7.7 -5.3 gamma-glutamyl-phosphate reductase compare
BWI76_RS11965 -7.5 -5.9 orotidine-5'-phosphate decarboxylase compare
BWI76_RS27385 -7.5 -7.3 orotate phosphoribosyltransferase compare
BWI76_RS01655 -7.4 -9.9 homoserine O-succinyltransferase compare
BWI76_RS11860 -7.4 -8.8 anthranilate synthase component I compare
BWI76_RS04465 -7.2 -7.1 carbamoyl-phosphate synthase small subunit compare
BWI76_RS23365 -7.2 -6.2 LysR family transcriptional regulator compare
BWI76_RS00835 -7.2 -16.1 phosphoenolpyruvate carboxylase compare
BWI76_RS21265 -7.2 -14.5 phosphoribosylformylglycinamidine synthase compare
BWI76_RS01615 -7.2 -11.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS04255 -7.1 -10.9 threonine synthase compare
BWI76_RS05840 -7.1 -6.9 glutamate 5-kinase compare
BWI76_RS04245 -7.1 -15.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS07065 -7.1 -8.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS23360 -7.1 -4.9 diaminopimelate decarboxylase compare
BWI76_RS18935 -7.0 -8.7 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS18940 -6.9 -4.9 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS27390 -6.8 -5.4 ribonuclease PH compare
BWI76_RS09645 -6.7 -2.9 thioredoxin-disulfide reductase compare
BWI76_RS26085 -6.7 -4.6 3-dehydroquinate synthase compare
BWI76_RS10990 -6.7 -4.0 dihydroorotase compare
BWI76_RS04685 -6.6 -13.8 putative leucine operon leader peptide compare
BWI76_RS18955 -6.6 -5.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS04665 -6.6 -17.5 3-isopropylmalate dehydratase small subunit compare
BWI76_RS20965 -6.5 -5.0 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS00980 -6.5 -14.2 PLP-dependent threonine dehydratase compare
BWI76_RS18925 -6.4 -7.8 histidinol dehydrogenase compare
BWI76_RS25115 -6.4 -10.7 argininosuccinate synthase compare
BWI76_RS04670 -6.4 -12.0 3-isopropylmalate dehydratase large subunit compare
BWI76_RS13920 -6.3 -9.1 magnesium-translocating P-type ATPase compare
BWI76_RS00985 -6.2 -10.3 transcriptional regulator IlvY compare
BWI76_RS18920 -6.2 -5.9 ATP phosphoribosyltransferase compare
BWI76_RS00855 -6.2 -12.6 argininosuccinate lyase compare
BWI76_RS09910 -6.2 -18.0 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS18950 -6.1 -4.8 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS04250 -6.1 -10.2 homoserine kinase compare
BWI76_RS04510 -6.1 -4.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS22755 -6.0 -10.0 phosphoadenosine phosphosulfate reductase compare
BWI76_RS21475 -6.0 -5.9 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS25645 -5.9 -9.8 shikimate dehydrogenase compare
BWI76_RS22760 -5.9 -8.9 sulfite reductase subunit beta compare
BWI76_RS00965 -5.8 -2.4 acetolactate synthase 2 small subunit compare
BWI76_RS07070 -5.5 -6.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS20355 -5.5 -4.0 colicin V production protein compare
BWI76_RS00975 -5.5 -8.2 dihydroxy-acid dehydratase compare
BWI76_RS00845 -5.5 -8.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS08385 -5.4 -6.3 citrate (Si)-synthase compare
BWI76_RS01800 -5.4 -7.5 glucose-6-phosphate isomerase compare
BWI76_RS01610 -5.4 -5.2 phosphoribosylamine--glycine ligase compare
BWI76_RS11840 -5.4 -4.7 tryptophan synthase subunit alpha compare
BWI76_RS24285 -5.3 -10.1 cystathionine beta-lyase compare
BWI76_RS04160 -5.3 -8.1 phosphoserine phosphatase compare
BWI76_RS11850 -5.3 -7.8 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS11845 -5.3 -2.1 tryptophan synthase subunit beta compare
BWI76_RS09755 -5.2 -11.2 phosphoserine transaminase compare
BWI76_RS03010 -5.1 -8.4 ornithine carbamoyltransferase compare
BWI76_RS22690 -5.0 -6.9 adenylyl-sulfate kinase compare
BWI76_RS22765 -5.0 -15.0 sulfite reductase subunit alpha compare
BWI76_RS00400 -4.9 -3.4 glutamine synthetase compare
BWI76_RS11855 -4.7 -9.6 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS04680 -4.6 -10.3 2-isopropylmalate synthase compare
BWI76_RS21465 -4.6 -3.5 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS02735 -4.5 -7.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS23240 -4.3 -3.0 exonuclease V subunit gamma compare
BWI76_RS04240 -4.2 -4.0 thr operon leader peptide compare
BWI76_RS20435 -4.2 -2.5 chorismate synthase compare
BWI76_RS26000 -4.1 -8.9 aspartate aminotransferase family protein compare
BWI76_RS04645 -4.0 -3.6 3-dehydroquinase compare
BWI76_RS09760 -4.0 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS20650 -3.9 -2.7 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS23230 -3.7 -2.5 exodeoxyribonuclease V subunit beta compare
BWI76_RS26055 -3.6 -11.8 siroheme synthase compare
BWI76_RS05015 -3.5 -4.6 transcriptional regulator compare
BWI76_RS00180 -3.4 -2.7 F0F1 ATP synthase subunit epsilon compare
BWI76_RS09660 -3.4 -2.3 DNA translocase FtsK compare
BWI76_RS15115 -3.3 -6.0 MFS transporter compare
BWI76_RS01200 -3.2 -3.3 diaminopimelate epimerase compare
BWI76_RS23265 -3.0 -4.8 hypothetical protein compare
BWI76_RS15225 -2.9 -2.0 DeoR family transcriptional regulator compare
BWI76_RS06525 -2.6 -6.9 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS00960 -2.6 -3.5 acetolactate synthase 2 catalytic subunit compare
BWI76_RS02410 -2.6 -2.5 EF-P beta-lysylation protein EpmB compare
BWI76_RS01350 -2.5 -2.1 NAD(P)H-flavin reductase compare
BWI76_RS01275 -2.5 -9.9 LysR family transcriptional regulator compare
BWI76_RS05200 -2.4 -3.9 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS26570 -2.3 -4.2 anion permease compare
BWI76_RS06530 -2.2 -5.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS25600 -2.2 -1.8 tRNA-Thr compare
BWI76_RS04530 -2.1 -2.2 peptidylprolyl isomerase SurA compare
BWI76_RS23480 -2.1 -12.8 EAL domain-containing protein compare
BWI76_RS17975 -2.1 -2.9 tail-specific protease compare
BWI76_RS21140 -2.1 -4.2 molecular chaperone HscA compare
BWI76_RS20640 -2.0 -6.2 cysteine synthase A compare
BWI76_RS00970 -1.9 -3.2 branched chain amino acid aminotransferase compare
BWI76_RS00390 -1.9 -5.3 two-component system sensor histidine kinase NtrB compare
BWI76_RS13915 -1.8 -3.7 magnesium transport protein MgtC compare
BWI76_RS25065 -1.7 -3.5 polyribonucleotide nucleotidyltransferase compare
BWI76_RS22700 -1.6 -5.8 sulfate adenylyltransferase subunit 2 compare
BWI76_RS24075 -1.5 -5.5 glutathione synthase compare
BWI76_RS25320 -1.5 -8.7 glutamate synthase compare
BWI76_RS24900 -1.5 -2.2 DeoR family transcriptional regulator compare
BWI76_RS00385 -1.5 -8.5 nitrogen assimilation regulatory protein compare
BWI76_RS20440 -1.5 -1.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS01210 -1.4 -2.7 tyrosine recombinase XerC compare
BWI76_RS22695 -1.4 -5.1 sulfate adenylyltransferase compare
BWI76_RS04705 -1.4 -7.8 DNA-binding transcriptional regulator FruR compare
BWI76_RS02530 -1.4 -2.1 tRNA dimethylallyltransferase compare
BWI76_RS23915 -1.4 -3.3 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS15110 -1.4 -7.7 putative excinuclease ABC subunit A compare
BWI76_RS20995 -1.3 -5.7 RNA degradosome polyphosphate kinase compare
BWI76_RS00380 -1.3 -6.3 oxygen-independent coproporphyrinogen III oxidase compare
BWI76_RS08525 -1.3 -2.2 colicin transporter compare
BWI76_RS25300 -1.3 -3.9 hybrid sensor histidine kinase/response regulator compare
BWI76_RS21480 -1.3 -2.9 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS06765 -1.3 -2.8 transcriptional regulator compare
BWI76_RS11130 -1.3 -5.3 PTS glucose transporter subunit IIBC compare
BWI76_RS24025 -1.3 -6.0 agmatinase compare
BWI76_RS21370 -1.3 -2.8 ATP-dependent RNA helicase SrmB compare
BWI76_RS22705 -1.3 -6.9 siroheme synthase compare
BWI76_RS17980 -1.3 -3.1 RNA chaperone ProQ compare
BWI76_RS17720 -1.2 -1.0 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS19025 -1.2 -7.9 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
BWI76_RS26620 -1.2 -1.5 Fe-S biogenesis protein NfuA compare
BWI76_RS13595 -1.2 -2.7 transcriptional regulator compare
BWI76_RS25315 -1.2 -9.1 glutamate synthase large subunit compare
BWI76_RS15830 -1.2 -1.8 hypothetical protein compare
BWI76_RS04100 -1.2 -3.6 peptide chain release factor 3 compare
BWI76_RS26395 -1.2 -4.8 cell division protein FtsE compare
BWI76_RS06185 -1.1 -5.8 shikimate kinase II compare
BWI76_RS26075 -1.1 -3.1 DNA adenine methylase compare
BWI76_RS15840 -1.1 -1.7 prophage protein compare
BWI76_RS05120 -1.1 -6.6 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS25060 -1.1 -3.5 lipoprotein NlpI compare
BWI76_RS11040 -1.1 -2.9 ribonuclease E compare
BWI76_RS01685 -1.1 -7.5 methionine synthase compare
BWI76_RS09655 -1.1 -3.4 leucine-responsive regulatory protein compare
BWI76_RS16965 -1.1 -2.7 murein lipoprotein compare
BWI76_RS26200 -1.1 -4.6 starch synthase compare
BWI76_RS00600 -1.1 -4.4 LacI family transcriptional regulator compare
BWI76_RS21580 -1.1 -1.5 SsrA-binding protein compare
BWI76_RS25335 -1.1 -2.7 stringent starvation protein A compare
BWI76_RS15850 -1.1 -0.6 DUF1317 domain-containing protein compare
BWI76_RS09870 -1.1 -4.5 aromatic amino acid aminotransferase compare
BWI76_RS09650 -1.0 -4.7 hypothetical protein compare
BWI76_RS08530 -1.0 -2.8 protein TolA compare
BWI76_RS09530 -1.0 -1.2 hypothetical protein compare
BWI76_RS09190 -1.0 -3.1 hypothetical protein compare
BWI76_RS26390 -1.0 -3.3 cell division protein FtsX compare
BWI76_RS02180 -0.9 -1.5 hypothetical protein compare
BWI76_RS20970 -0.9 -1.5 phosphoribosylglycinamide formyltransferase compare
BWI76_RS25505 -0.9 -4.1 RNase E specificity factor CsrD compare
BWI76_RS12090 -0.9 -0.9 HNH endonuclease compare
BWI76_RS15835 -0.9 -0.9 hypothetical protein compare
BWI76_RS17805 -0.9 -1.1 membrane protein compare
BWI76_RS21505 -0.9 -1.2 hypothetical protein compare
BWI76_RS18710 -0.9 -6.8 GGDEF-domain containing protein compare
BWI76_RS13800 -0.9 -3.4 zinc-dependent alcohol dehydrogenase compare
BWI76_RS27430 -0.9 -0.9 (p)ppGpp synthetase compare
BWI76_RS26175 -0.8 -3.1 DeoR/GlpR family transcriptional regulator compare
BWI76_RS21000 -0.8 -3.5 exopolyphosphatase compare
BWI76_RS02990 -0.8 -2.4 aspartate carbamoyltransferase regulatory subunit compare
BWI76_RS01870 -0.8 -3.9 diacylglycerol kinase compare
BWI76_RS19690 -0.8 -2.4 LysR family transcriptional regulator compare
BWI76_RS05450 -0.8 -1.2 ribonuclease HI compare
BWI76_RS07645 -0.8 -1.2 short-chain dehydrogenase/reductase compare
BWI76_RS21980 -0.8 -2.0 hypothetical protein compare
BWI76_RS18140 -0.8 -2.8 zinc ABC transporter permease compare
BWI76_RS25425 -0.8 -1.8 arginine repressor compare
BWI76_RS19670 -0.8 -1.9 S-formylglutathione hydrolase compare
BWI76_RS17300 -0.8 -1.4 tRNA-Tyr compare
BWI76_RS15665 -0.8 -2.2 hypothetical protein compare
BWI76_RS17110 -0.8 -1.5 vitamin B12 ABC transporter permease BtuC compare
BWI76_RS13240 -0.8 -1.3 hypothetical protein compare
BWI76_RS19575 -0.8 -1.4 maleylacetoacetate isomerase compare
BWI76_RS23810 -0.8 -1.9 bifunctional protein-disulfide isomerase/oxidoreductase DsbC compare
BWI76_RS08665 -0.8 -3.5 6-phosphogluconolactonase compare
BWI76_RS18715 -0.8 -3.7 hypothetical protein compare
BWI76_RS13490 -0.8 -3.1 pyrimidine-specific ribonucleoside hydrolase RihA compare
BWI76_RS19845 -0.8 -2.3 phosphatase compare
BWI76_RS24115 -0.8 -2.4 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family compare
BWI76_RS04955 -0.8 -1.5 hypoxanthine phosphoribosyltransferase compare
BWI76_RS01185 -0.7 -1.3 adenylate cyclase compare
BWI76_RS23485 -0.7 -4.5 hypothetical protein compare
BWI76_RS25960 -0.7 -2.6 NUDIX hydrolase compare
BWI76_RS24400 -0.7 -3.7 outer membrane channel protein TolC compare
BWI76_RS15825 -0.7 -0.9 hypothetical protein compare
BWI76_RS17785 -0.7 -3.4 septum site-determining protein MinD compare
BWI76_RS17095 -0.7 -3.0 vitamin B12 ABC transporter ATP-binding protein BtuD compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in exudates experiments

For exudates Brachypodium distachyon 13-day exudates across organisms