Experiment set8IT038 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Xylemvessel barcodes T0L1P4

200 most important genes:

  gene name fitness t score description  
Xcc-8004.5021.1 -5.2 -2.3 FIG01211474: hypothetical protein compare
Xcc-8004.683.1 -5.1 -3.1 hypothetical protein compare
Xcc-8004.713.1 -4.6 -1.2 FIG01210186: hypothetical protein compare
Xcc-8004.726.1 -4.5 -1.1 Putative preQ0 transporter compare
Xcc-8004.1660.1 -4.2 -1.1 PTS system nitrogen-specific IIA component, PtsN compare
Xcc-8004.4430.1 -4.2 -1.5 General secretion pathway protein G compare
Xcc-8004.3211.1 -4.2 -3.2 protein of unknown function DUF88 compare
Xcc-8004.4699.1 -4.1 -1.5 Flagellar motor protein compare
Xcc-8004.3733.1 -4.1 -2.5 Type III secretion inner membrane protein (YscQ,homologous to flagellar export components) compare
Xcc-8004.770.1 -3.9 -2.3 hypothetical protein compare
Xcc-8004.957.1 -3.8 -6.0 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.876.1 -3.7 -1.3 Mobile element protein compare
Xcc-8004.2921.1 -3.4 -4.0 ferrous iron transport protein compare
Xcc-8004.1380.1 -3.4 -2.0 COG2827: putative endonuclease containing a URI domain compare
Xcc-8004.4493.1 -3.4 -5.1 sugar translocase compare
Xcc-8004.1763.1 -3.3 -5.0 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.659.1 -3.1 -2.1 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.3304.1 -3.1 -1.1 FIG01211108: hypothetical protein compare
Xcc-8004.3792.1 -3.1 -1.1 Mobile element protein compare
Xcc-8004.5224.1 -3.0 -2.4 bleomycin resistance protein compare
Xcc-8004.3942.1 -3.0 -1.8 RelE/StbE replicon stabilization toxin compare
Xcc-8004.4738.1 -3.0 -9.3 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.898.1 -3.0 -2.5 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2168.1 -2.8 -5.0 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Xcc-8004.2922.1 -2.8 -1.9 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.623.1 -2.8 -2.3 Phosphoserine phosphatase compare
Xcc-8004.1436.1 -2.7 -1.7 Holliday junction DNA helicase RuvA compare
Xcc-8004.3676.1 -2.7 -3.7 Translation elongation factor LepA compare
Xcc-8004.4620.1 -2.7 -8.7 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.4225.1 -2.7 -1.9 Regulator of nucleoside diphosphate kinase compare
Xcc-8004.3875.1 -2.7 -1.3 FIG01212144: hypothetical protein compare
Xcc-8004.2346.1 -2.7 -1.5 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.482.1 -2.6 -3.4 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Xcc-8004.589.1 -2.6 -2.6 hypothetical protein compare
Xcc-8004.2343.1 -2.6 -1.7 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.5334.1 -2.6 -3.3 hypothetical protein compare
Xcc-8004.924.1 -2.5 -1.9 FIG01200701: possible membrane protein compare
Xcc-8004.1361.1 -2.5 -1.3 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) compare
Xcc-8004.3402.1 -2.5 -3.1 FIG01210246: hypothetical protein compare
Xcc-8004.1222.1 -2.5 -2.5 Glyoxalase family protein compare
Xcc-8004.3958.1 -2.5 -2.1 Low molecular weight heat shock protein compare
Xcc-8004.3310.1 -2.4 -5.9 Chromosome partition protein smc compare
Xcc-8004.4836.1 -2.4 -5.4 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.1086.1 -2.4 -1.7 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2911.1 -2.4 -1.4 Transcription elongation factor GreA compare
Xcc-8004.998.1 -2.4 -1.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.5182.1 -2.3 -3.3 hypothetical protein compare
Xcc-8004.1205.1 -2.3 -2.9 hypothetical protein compare
Xcc-8004.2213.1 -2.3 -1.4 FIG01210598: hypothetical protein compare
Xcc-8004.1133.1 -2.3 -1.6 Rubredoxin compare
Xcc-8004.4739.1 -2.2 -4.6 Lipid A core - O-antigen ligase and related enzymes compare
Xcc-8004.130.1 -2.2 -7.0 hypothetical protein compare
Xcc-8004.4381.1 -2.2 -3.6 Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1) compare
Xcc-8004.1809.1 -2.2 -1.3 extracellular serine protease compare
Xcc-8004.2620.1 -2.2 -8.6 NfuA Fe-S protein maturation compare
Xcc-8004.4112.1 -2.2 -4.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.1437.1 -2.2 -6.0 Kup system potassium uptake protein compare
Xcc-8004.2259.1 -2.1 -5.9 PhbF compare
Xcc-8004.4000.1 -2.1 -2.3 COG1399 protein, clustered with ribosomal protein L32p compare
Xcc-8004.2182.1 -2.1 -10.0 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.2274.1 -2.1 -4.9 ATP-dependent 23S rRNA helicase DbpA compare
Xcc-8004.3523.1 -2.0 -3.0 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit compare
Xcc-8004.4168.1 -2.0 -4.5 GTP-binding and nucleic acid-binding protein YchF compare
Xcc-8004.5098.1 -2.0 -2.7 hypothetical protein compare
Xcc-8004.3976.1 -2.0 -4.2 2-methylaconitate cis-trans isomerase compare
Xcc-8004.736.1 -2.0 -2.2 hypothetical protein compare
Xcc-8004.318.1 -1.9 -5.1 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.3054.1 -1.9 -1.4 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.288.1 -1.9 -1.0 Ferredoxin compare
Xcc-8004.601.1 -1.9 -5.4 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.4429.1 -1.9 -2.7 General secretion pathway protein H compare
Xcc-8004.4527.1 -1.8 -7.9 ATP-dependent RNA helicase RhlE compare
Xcc-8004.1393.1 -1.8 -2.7 Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
Xcc-8004.609.1 -1.8 -2.3 hypothetical protein compare
Xcc-8004.5038.1 -1.8 -1.5 ABC-type Na+ transport system, ATPase component compare
Xcc-8004.3324.1 -1.8 -4.0 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.1615.1 -1.8 -1.2 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.618.1 -1.8 -1.9 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Xcc-8004.3595.1 -1.7 -1.2 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Xcc-8004.4373.1 -1.7 -3.0 LppC putative lipoprotein compare
Xcc-8004.4200.1 -1.7 -1.8 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.1841.1 -1.7 -3.2 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) compare
Xcc-8004.465.1 -1.7 -2.2 Transcriptional regulator PobR, AraC family compare
Xcc-8004.3968.1 -1.7 -2.3 Mobile element protein compare
Xcc-8004.1118.1 -1.7 -1.1 hypothetical protein compare
Xcc-8004.5167.1 -1.7 -1.7 L-fuconate dehydratase (EC 4.2.1.68) compare
Xcc-8004.1359.1 -1.7 -4.9 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.127.1 -1.6 -1.7 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.2659.1 -1.6 -1.9 FIG01212223: hypothetical protein compare
Xcc-8004.3058.1 -1.6 -3.4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Xcc-8004.2533.1 -1.6 -2.2 Candidate type III effector Hop protein compare
Xcc-8004.1616.1 -1.6 -1.1 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.574.1 -1.6 -5.8 Di-/tripeptide transporter compare
Xcc-8004.2910.1 -1.6 -5.5 Regulatory protein, RpfE type compare
Xcc-8004.4025.1 -1.6 -6.4 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.2924.1 -1.6 -4.2 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.3395.1 -1.6 -2.3 Transcriptional regulator, GntR family compare
Xcc-8004.393.1 -1.6 -3.2 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Xcc-8004.2229.1 -1.6 -6.3 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Xcc-8004.1328.1 -1.5 -1.0 FIG01210090: hypothetical protein compare
Xcc-8004.5202.1 -1.5 -3.8 Twin-arginine translocation protein TatC compare
Xcc-8004.1001.1 -1.5 -1.8 FIG01213217: hypothetical protein compare
Xcc-8004.4698.1 -1.5 -2.1 Methyl-accepting chemotaxis protein compare
Xcc-8004.337.1 -1.5 -3.0 ATPase, AFG1 family compare
Xcc-8004.4539.1 -1.5 -5.8 Oligopeptidase A (EC 3.4.24.70) compare
Xcc-8004.2011.1 -1.5 -1.5 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.2217.1 -1.5 -3.1 FIG01209779: hypothetical protein compare
Xcc-8004.144.1 -1.5 -1.7 Putative protein-S-isoprenylcysteine methyltransferase compare
Xcc-8004.1486.1 -1.5 -1.3 Coenzyme PQQ synthesis protein D compare
Xcc-8004.195.1 -1.4 -0.9 phosphoesterase, putative compare
Xcc-8004.645.1 -1.4 -0.9 probable iron binding protein from the HesB_IscA_SufA family compare
Xcc-8004.4719.1 -1.4 -2.9 Diguanylate cyclase (GGDEF domain) with GAF sensor compare
Xcc-8004.1228.1 -1.4 -4.8 Xaa-Pro dipeptidase PepQ (EC 3.4.13.9) compare
Xcc-8004.2282.1 -1.4 -1.8 tRNA:Cm32/Um32 methyltransferase compare
Xcc-8004.2923.1 -1.4 -5.7 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.3982.1 -1.4 -4.0 Propionate catabolism operon regulatory protein PrpR compare
Xcc-8004.2672.1 -1.4 -1.6 hypothetical protein compare
Xcc-8004.3979.1 -1.4 -4.2 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.1619.1 -1.4 -1.8 PspA/IM30 family protein compare
Xcc-8004.1871.1 -1.4 -2.6 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.2713.1 -1.4 -0.9 Nitrate/nitrite transporter compare
Xcc-8004.2012.1 -1.4 -4.7 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.778.1 -1.4 -1.8 FIG01214273: hypothetical protein compare
Xcc-8004.715.1 -1.4 -1.9 RNA polymerase sigma factor compare
Xcc-8004.5352.1 -1.4 -1.3 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Xcc-8004.3832.1 -1.4 -1.3 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Xcc-8004.2228.1 -1.4 -4.3 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Xcc-8004.354.1 -1.4 -3.1 macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. compare
Xcc-8004.1124.1 -1.4 -1.4 RidA/YER057c/UK114 superfamily, group 3 compare
Xcc-8004.4046.1 -1.4 -6.9 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.1636.1 -1.4 -3.4 hypothetical protein compare
Xcc-8004.4752.1 -1.4 -1.2 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.1166.1 -1.4 -3.3 FIG01210744: hypothetical protein compare
Xcc-8004.3018.1 -1.3 -1.3 hypothetical protein compare
Xcc-8004.3647.1 -1.3 -3.1 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.855.1 -1.3 -1.6 ElaA protein compare
Xcc-8004.5201.1 -1.3 -1.9 FIG01211164: hypothetical protein compare
Xcc-8004.1138.1 -1.3 -2.2 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Xcc-8004.3612.1 -1.3 -0.7 Putative translation initiation inhibitor, yjgF family compare
Xcc-8004.787.1 -1.3 -0.7 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.3512.1 -1.3 -1.5 Transcription repressor of tripartite multidrug resistance system compare
Xcc-8004.280.1 -1.3 -4.3 3-oxoacyl-[ACP] synthase III in alkane synthesis cluster compare
Xcc-8004.3717.1 -1.3 -1.9 Hpa2 protein compare
Xcc-8004.2230.1 -1.3 -3.4 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Xcc-8004.4821.1 -1.3 -2.0 FIG01209726: hypothetical protein compare
Xcc-8004.1728.1 -1.3 -2.0 FIG01210339: hypothetical protein compare
Xcc-8004.3108.1 -1.3 -2.4 Regulatory protein RecX compare
Xcc-8004.290.1 -1.3 -3.8 NAD(P)H steroid dehydrogenase-like protein in alkane synthesis cluster compare
Xcc-8004.4710.1 -1.3 -2.2 FIG01211889: hypothetical protein compare
Xcc-8004.2895.1 -1.3 -2.5 FIG01210907: hypothetical protein compare
Xcc-8004.4497.1 -1.3 -1.7 Mobile element protein compare
Xcc-8004.1514.1 -1.3 -2.1 L-asparaginase (EC 3.5.1.1) compare
Xcc-8004.5363.1 -1.3 -1.6 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Xcc-8004.4204.1 -1.3 -1.3 FIG01210014: hypothetical protein compare
Xcc-8004.171.1 -1.3 -0.8 hypothetical protein compare
Xcc-8004.1752.1 -1.3 -2.0 accessory protein compare
Xcc-8004.4908.1 -1.3 -1.6 hypothetical protein compare
Xcc-8004.1112.1 -1.2 -1.6 Short chain dehydrogenase compare
Xcc-8004.3775.1 -1.2 -1.6 FIG001154: CcsA-related protein compare
Xcc-8004.4697.1 -1.2 -1.6 FIG01210654: hypothetical protein compare
Xcc-8004.319.1 -1.2 -5.5 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Xcc-8004.5252.1 -1.2 -3.9 FIG01210658: hypothetical protein compare
Xcc-8004.4069.1 -1.2 -1.4 FIG01211525: hypothetical protein compare
Xcc-8004.4957.1 -1.2 -2.1 hypothetical protein compare
Xcc-8004.4596.1 -1.2 -4.9 hypothetical protein compare
Xcc-8004.3303.1 -1.2 -1.9 Methylthioribose-1-phosphate isomerase (EC 5.3.1.23) compare
Xcc-8004.1085.1 -1.2 -1.1 FIG01212308: hypothetical protein compare
Xcc-8004.730.1 -1.2 -3.0 Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) compare
Xcc-8004.4364.1 -1.2 -3.4 Cell division protein MraZ compare
Xcc-8004.4098.1 -1.2 -2.5 FIG01211222: hypothetical protein compare
Xcc-8004.4199.1 -1.2 -5.4 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Xcc-8004.3379.1 -1.2 -3.9 Transcriptional regulator, ArsR family / Methyltransferase fusion compare
Xcc-8004.1241.1 -1.2 -2.5 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.2358.1 -1.2 -4.2 Segregation and condensation protein A compare
Xcc-8004.5082.1 -1.2 -2.0 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) compare
Xcc-8004.3222.1 -1.2 -1.2 Mobile element protein compare
Xcc-8004.5120.1 -1.2 -3.3 4-oxalomesaconate hydratase (EC 4.2.1.83) compare
Xcc-8004.2520.1 -1.2 -2.1 DNA repair protein RadC compare
Xcc-8004.3346.1 -1.2 -2.3 hypothetical protein compare
Xcc-8004.2879.1 -1.1 -0.7 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.3462.1 -1.1 -2.8 hypothetical protein compare
Xcc-8004.1526.1 -1.1 -5.5 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) compare
Xcc-8004.4251.1 -1.1 -1.3 hypothetical protein compare
Xcc-8004.1364.1 -1.1 -1.5 FIG01209970: hypothetical protein compare
Xcc-8004.2559.1 -1.1 -1.4 hypothetical protein compare
Xcc-8004.3313.1 -1.1 -2.1 LSU ribosomal protein L9p compare
Xcc-8004.1702.1 -1.1 -3.5 Proteins containing SET domain compare
Xcc-8004.5114.1 -1.1 -3.2 ATP-dependent DNA helicase UvrD/PcrA compare
Xcc-8004.3753.1 -1.1 -1.8 putative secreted protein compare
Xcc-8004.2761.1 -1.1 -1.1 FIG01212073: hypothetical protein compare
Xcc-8004.4186.1 -1.1 -3.6 hypothetical protein compare
Xcc-8004.4221.1 -1.1 -2.2 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Xcc-8004.4640.1 -1.1 -1.4 FIG01210726: hypothetical protein compare
Xcc-8004.2131.1 -1.1 -0.9 Predicted 4-hydroxyproline dipeptidase compare
Xcc-8004.3817.1 -1.1 -2.9 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Xcc-8004.4457.1 -1.1 -2.2 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.5398.1 -1.1 -2.0 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) compare
Xcc-8004.2013.1 -1.1 -2.6 Superoxide dismutase [Fe] (EC 1.15.1.1) compare
Xcc-8004.3938.1 -1.1 -3.4 Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) compare
Xcc-8004.500.1 -1.1 -1.3 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare


Specific Phenotypes

For 1 genes in this experiment

For in planta xylem Plant=Cauliflower; Treatment=None; Sample=xylem; Collection=Direct; Time=0_days in Xanthomonas campestris pv. campestris strain 8004

For in planta xylem Plant=Cauliflower; Treatment=None; Sample=xylem; Collection=Direct; Time=0_days across organisms