Experiment set8IT038 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM

200 most important genes:

  gene name fitness t score description  
BWI76_RS18920 -8.1 -5.6 ATP phosphoribosyltransferase compare
BWI76_RS20355 -7.6 -5.3 colicin V production protein compare
BWI76_RS18940 -7.5 -7.3 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS23360 -7.0 -4.9 diaminopimelate decarboxylase compare
BWI76_RS23920 -7.0 -4.5 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS01615 -6.7 -11.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS00980 -6.7 -13.5 PLP-dependent threonine dehydratase compare
BWI76_RS26085 -6.5 -4.5 3-dehydroquinate synthase compare
BWI76_RS18935 -6.5 -8.8 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS05840 -6.5 -7.7 glutamate 5-kinase compare
BWI76_RS04255 -6.4 -12.3 threonine synthase compare
BWI76_RS18950 -6.4 -4.9 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS00805 -6.4 -4.8 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS21265 -6.3 -12.7 phosphoribosylformylglycinamidine synthase compare
BWI76_RS07065 -6.2 -10.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS04670 -6.1 -10.6 3-isopropylmalate dehydratase large subunit compare
BWI76_RS05835 -6.0 -5.4 gamma-glutamyl-phosphate reductase compare
BWI76_RS04470 -6.0 -10.5 carbamoyl phosphate synthase large subunit compare
BWI76_RS04675 -5.9 -6.8 3-isopropylmalate dehydrogenase compare
BWI76_RS19845 -5.9 -8.7 phosphatase compare
BWI76_RS25115 -5.7 -8.4 argininosuccinate synthase compare
BWI76_RS08385 -5.6 -6.3 citrate (Si)-synthase compare
BWI76_RS00785 -5.6 -8.2 cystathionine gamma-synthase compare
BWI76_RS03010 -5.6 -9.2 ornithine carbamoyltransferase compare
BWI76_RS20350 -5.6 -7.7 amidophosphoribosyltransferase compare
BWI76_RS11855 -5.5 -8.1 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS00855 -5.5 -11.2 argininosuccinate lyase compare
BWI76_RS18955 -5.5 -5.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS11965 -5.5 -6.3 orotidine-5'-phosphate decarboxylase compare
BWI76_RS07070 -5.5 -8.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS00990 -5.5 -7.7 ketol-acid reductoisomerase compare
BWI76_RS11840 -5.4 -6.1 tryptophan synthase subunit alpha compare
BWI76_RS24285 -5.4 -7.1 cystathionine beta-lyase compare
BWI76_RS21475 -5.4 -5.8 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS01655 -5.4 -12.0 homoserine O-succinyltransferase compare
BWI76_RS18930 -5.3 -7.8 histidinol-phosphate transaminase compare
BWI76_RS27385 -5.3 -7.5 orotate phosphoribosyltransferase compare
BWI76_RS18925 -5.3 -9.2 histidinol dehydrogenase compare
BWI76_RS20965 -5.2 -3.4 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS09645 -5.1 -2.9 thioredoxin-disulfide reductase compare
BWI76_RS04250 -5.1 -6.6 homoserine kinase compare
BWI76_RS04685 -5.0 -11.7 putative leucine operon leader peptide compare
BWI76_RS04665 -5.0 -17.0 3-isopropylmalate dehydratase small subunit compare
BWI76_RS23365 -4.9 -9.4 LysR family transcriptional regulator compare
BWI76_RS15115 -4.9 -4.8 MFS transporter compare
BWI76_RS09910 -4.9 -14.7 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS02995 -4.8 -7.6 aspartate carbamoyltransferase compare
BWI76_RS00850 -4.8 -11.2 acetylglutamate kinase compare
BWI76_RS11850 -4.8 -11.1 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS01610 -4.7 -5.5 phosphoribosylamine--glycine ligase compare
BWI76_RS04645 -4.7 -5.6 3-dehydroquinase compare
BWI76_RS04245 -4.6 -13.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS00400 -4.6 -3.2 glutamine synthetase compare
BWI76_RS00845 -4.6 -11.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS04160 -4.6 -5.8 phosphoserine phosphatase compare
BWI76_RS01210 -4.6 -3.5 tyrosine recombinase XerC compare
BWI76_RS23220 -4.6 -7.6 amino-acid N-acetyltransferase compare
BWI76_RS23265 -4.6 -4.5 hypothetical protein compare
BWI76_RS00960 -4.6 -6.0 acetolactate synthase 2 catalytic subunit compare
BWI76_RS09755 -4.5 -12.1 phosphoserine transaminase compare
BWI76_RS11845 -4.5 -4.3 tryptophan synthase subunit beta compare
BWI76_RS04465 -4.5 -6.9 carbamoyl-phosphate synthase small subunit compare
BWI76_RS04240 -4.5 -3.1 thr operon leader peptide compare
BWI76_RS00975 -4.5 -9.5 dihydroxy-acid dehydratase compare
BWI76_RS13920 -4.3 -10.0 magnesium-translocating P-type ATPase compare
BWI76_RS11860 -4.3 -9.0 anthranilate synthase component I compare
BWI76_RS09760 -4.3 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS25645 -4.2 -7.2 shikimate dehydrogenase compare
BWI76_RS04680 -4.1 -9.8 2-isopropylmalate synthase compare
BWI76_RS20650 -4.1 -2.8 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS04525 -4.1 -3.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS20895 -4.1 -6.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS00835 -3.8 -14.2 phosphoenolpyruvate carboxylase compare
BWI76_RS09660 -3.7 -2.6 DNA translocase FtsK compare
BWI76_RS23230 -3.7 -2.5 exodeoxyribonuclease V subunit beta compare
BWI76_RS02530 -3.7 -3.3 tRNA dimethylallyltransferase compare
BWI76_RS05015 -3.6 -2.2 transcriptional regulator compare
BWI76_RS00965 -3.5 -2.0 acetolactate synthase 2 small subunit compare
BWI76_RS26940 -3.5 -7.7 transcriptional regulator compare
BWI76_RS26570 -3.5 -4.1 anion permease compare
BWI76_RS26000 -3.3 -8.5 aspartate aminotransferase family protein compare
BWI76_RS06525 -3.3 -7.2 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS23240 -3.2 -3.8 exonuclease V subunit gamma compare
BWI76_RS01275 -3.1 -9.8 LysR family transcriptional regulator compare
BWI76_RS04510 -3.1 -2.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS17975 -3.0 -4.2 tail-specific protease compare
BWI76_RS10990 -3.0 -2.5 dihydroorotase compare
BWI76_RS20435 -3.0 -2.0 chorismate synthase compare
BWI76_RS19840 -2.9 -2.0 hypothetical protein compare
BWI76_RS00985 -2.8 -7.1 transcriptional regulator IlvY compare
BWI76_RS25425 -2.8 -3.1 arginine repressor compare
BWI76_RS27390 -2.7 -3.6 ribonuclease PH compare
BWI76_RS21465 -2.7 -2.9 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS06530 -2.6 -5.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS01200 -2.6 -2.6 diaminopimelate epimerase compare
BWI76_RS23480 -2.5 -11.1 EAL domain-containing protein compare
BWI76_RS20380 -2.5 -2.0 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS21140 -2.4 -3.6 molecular chaperone HscA compare
BWI76_RS13915 -2.4 -5.5 magnesium transport protein MgtC compare
BWI76_RS25320 -2.4 -7.4 glutamate synthase compare
BWI76_RS02410 -2.3 -3.1 EF-P beta-lysylation protein EpmB compare
BWI76_RS25315 -2.3 -10.9 glutamate synthase large subunit compare
BWI76_RS24850 -2.2 -9.3 DeoR family transcriptional regulator compare
BWI76_RS22755 -2.2 -6.3 phosphoadenosine phosphosulfate reductase compare
BWI76_RS15225 -2.1 -2.9 DeoR family transcriptional regulator compare
BWI76_RS22690 -2.1 -4.2 adenylyl-sulfate kinase compare
BWI76_RS22760 -2.0 -6.5 sulfite reductase subunit beta compare
BWI76_RS20440 -2.0 -2.0 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS24900 -2.0 -2.9 DeoR family transcriptional regulator compare
BWI76_RS02580 -1.9 -2.4 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS26620 -1.9 -1.7 Fe-S biogenesis protein NfuA compare
BWI76_RS27305 -1.9 -6.1 glycosyl transferase compare
BWI76_RS26075 -1.9 -3.4 DNA adenine methylase compare
BWI76_RS20640 -1.9 -4.1 cysteine synthase A compare
BWI76_RS15850 -1.8 -1.1 DUF1317 domain-containing protein compare
BWI76_RS09615 -1.8 -2.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
BWI76_RS04705 -1.7 -5.5 DNA-binding transcriptional regulator FruR compare
BWI76_RS16965 -1.7 -3.8 murein lipoprotein compare
BWI76_RS15840 -1.6 -2.9 prophage protein compare
BWI76_RS06765 -1.6 -2.0 transcriptional regulator compare
BWI76_RS02735 -1.6 -3.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS27440 -1.6 -3.2 DNA helicase RecG compare
BWI76_RS22765 -1.6 -6.5 sulfite reductase subunit alpha compare
BWI76_RS26395 -1.6 -5.6 cell division protein FtsE compare
BWI76_RS27165 -1.6 -2.7 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS15110 -1.6 -8.9 putative excinuclease ABC subunit A compare
BWI76_RS25060 -1.5 -4.8 lipoprotein NlpI compare
BWI76_RS17720 -1.5 -1.2 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS25070 -1.5 -2.1 hypothetical protein compare
BWI76_RS14835 -1.5 -1.5 hypothetical protein compare
BWI76_RS00345 -1.5 -4.1 protein disulfide oxidoreductase DsbA compare
BWI76_RS26460 -1.5 -4.4 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS11235 -1.5 -1.8 hypothetical protein compare
BWI76_RS00355 -1.5 -2.1 DNA polymerase I compare
BWI76_RS00025 -1.5 -1.2 hypothetical protein compare
BWI76_RS27430 -1.5 -1.4 (p)ppGpp synthetase compare
BWI76_RS01870 -1.5 -6.4 diacylglycerol kinase compare
BWI76_RS00380 -1.4 -6.8 oxygen-independent coproporphyrinogen III oxidase compare
BWI76_RS26455 -1.4 -4.1 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS06675 -1.4 -8.1 nickel/cobalt efflux protein RcnA compare
BWI76_RS25065 -1.4 -3.7 polyribonucleotide nucleotidyltransferase compare
BWI76_RS04845 -1.4 -5.1 nicotinate-nucleotide pyrophosphorylase compare
BWI76_RS20995 -1.4 -6.3 RNA degradosome polyphosphate kinase compare
BWI76_RS17980 -1.4 -1.7 RNA chaperone ProQ compare
BWI76_RS24075 -1.4 -4.7 glutathione synthase compare
BWI76_RS06770 -1.3 -7.4 Hha toxicity attenuator compare
BWI76_RS19870 -1.3 -2.2 malate:quinone oxidoreductase compare
BWI76_RS21580 -1.3 -1.2 SsrA-binding protein compare
BWI76_RS17290 -1.3 -4.1 formyltetrahydrofolate deformylase compare
BWI76_RS00970 -1.3 -2.7 branched chain amino acid aminotransferase compare
BWI76_RS09655 -1.3 -5.6 leucine-responsive regulatory protein compare
BWI76_RS09190 -1.3 -2.3 hypothetical protein compare
BWI76_RS15845 -1.3 -1.4 hypothetical protein compare
BWI76_RS01545 -1.3 -4.3 thiamine biosynthesis protein ThiS compare
BWI76_RS25280 -1.2 -2.4 RNase adaptor protein RapZ compare
BWI76_RS24025 -1.2 -5.8 agmatinase compare
BWI76_RS00390 -1.2 -3.6 two-component system sensor histidine kinase NtrB compare
BWI76_RS00180 -1.2 -1.4 F0F1 ATP synthase subunit epsilon compare
BWI76_RS11250 -1.2 -2.5 spermidine/putrescine ABC transporter permease PotB compare
BWI76_RS13595 -1.2 -2.6 transcriptional regulator compare
BWI76_RS26670 -1.1 -6.1 two-component sensor histidine kinase compare
BWI76_RS27290 -1.1 -5.4 hypothetical protein compare
BWI76_RS27235 -1.1 -6.1 murein hydrolase activator EnvC compare
BWI76_RS01900 -1.1 -2.9 tRNA-dihydrouridine synthase A compare
BWI76_RS03595 -1.1 -1.7 ethanolamine utilization protein EutM compare
BWI76_RS26055 -1.1 -6.2 siroheme synthase compare
BWI76_RS01350 -1.1 -1.2 NAD(P)H-flavin reductase compare
BWI76_RS25960 -1.1 -2.8 NUDIX hydrolase compare
BWI76_RS09610 -1.1 -1.3 ATP-dependent Clp protease adaptor ClpS compare
BWI76_RS24945 -1.1 -1.3 glutamine amidotransferase compare
BWI76_RS21165 -1.1 -1.8 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS18710 -1.1 -7.1 GGDEF-domain containing protein compare
BWI76_RS25285 -1.1 -1.4 HPr family phosphocarrier protein compare
BWI76_RS16480 -1.1 -3.2 lactoylglutathione lyase compare
BWI76_RS26390 -1.1 -4.1 cell division protein FtsX compare
BWI76_RS15835 -1.1 -1.0 hypothetical protein compare
BWI76_RS21480 -1.1 -2.6 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS00600 -1.1 -5.6 LacI family transcriptional regulator compare
BWI76_RS15830 -1.0 -1.7 hypothetical protein compare
BWI76_RS08580 -1.0 -3.4 quinolinate synthetase compare
BWI76_RS01535 -1.0 -3.0 thiazole synthase compare
BWI76_RS08525 -1.0 -1.8 colicin transporter compare
BWI76_RS09650 -1.0 -3.9 hypothetical protein compare
BWI76_RS18165 -1.0 -1.6 NUDIX pyrophosphatase compare
BWI76_RS17785 -1.0 -4.5 septum site-determining protein MinD compare
BWI76_RS15680 -1.0 -3.3 hypothetical protein compare
BWI76_RS01555 -1.0 -6.4 phosphomethylpyrimidine synthase ThiC compare
BWI76_RS11255 -1.0 -1.8 putrescine/spermidine ABC transporter ATP-binding protein compare
BWI76_RS01115 -1.0 -2.4 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS26665 -1.0 -2.9 DNA-binding response regulator compare
BWI76_RS25160 -1.0 -1.8 transcription elongation factor GreA compare
BWI76_RS05120 -1.0 -5.7 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS24180 -0.9 -1.4 hypothetical protein compare
BWI76_RS04305 -0.9 -1.0 molecular chaperone DnaJ compare
BWI76_RS18715 -0.9 -4.6 hypothetical protein compare
BWI76_RS14075 -0.9 -2.0 TetR family transcriptional regulator compare
BWI76_RS21070 -0.9 -1.2 outer membrane protein assembly factor BamB compare
BWI76_RS23485 -0.9 -4.6 hypothetical protein compare
BWI76_RS01220 -0.9 -3.8 DNA-dependent helicase II compare
BWI76_RS25300 -0.9 -2.2 hybrid sensor histidine kinase/response regulator compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms