Experiment set8IT037 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Xylemvessel barcodes T0L1P3

200 most important genes:

  gene name fitness t score description  
Xcc-8004.1132.1 -5.5 -2.1 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
Xcc-8004.957.1 -5.0 -4.9 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.375.1 -5.0 -2.2 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases compare
Xcc-8004.3431.1 -4.7 -2.3 DNA repair protein RecN compare
Xcc-8004.3898.1 -4.2 -0.9 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Xcc-8004.2921.1 -4.0 -2.8 ferrous iron transport protein compare
Xcc-8004.705.1 -4.0 -2.8 hypothetical protein compare
Xcc-8004.1839.1 -3.7 -1.2 FIG01210863: hypothetical protein compare
Xcc-8004.1961.1 -3.7 -1.6 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Xcc-8004.4737.1 -3.6 -5.8 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.3322.1 -3.6 -1.1 FIG01211446: hypothetical protein compare
Xcc-8004.5324.1 -3.6 -2.8 Mobile element protein compare
Xcc-8004.4739.1 -3.5 -4.7 Lipid A core - O-antigen ligase and related enzymes compare
Xcc-8004.4283.1 -3.5 -1.1 Diacylglycerol kinase (EC 2.7.1.107) compare
Xcc-8004.4264.1 -3.5 -2.3 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
Xcc-8004.2620.1 -3.4 -9.4 NfuA Fe-S protein maturation compare
Xcc-8004.4493.1 -3.4 -4.9 sugar translocase compare
Xcc-8004.2652.1 -3.4 -2.1 response regulator compare
Xcc-8004.3726.1 -3.3 -1.6 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.623.1 -3.3 -1.8 Phosphoserine phosphatase compare
Xcc-8004.4441.1 -3.3 -3.9 Tyrosine recombinase XerD compare
Xcc-8004.4620.1 -3.3 -8.3 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.5161.1 -3.2 -2.8 FIG01212148: hypothetical protein compare
Xcc-8004.1064.1 -3.0 -2.0 hypothetical protein compare
Xcc-8004.778.1 -3.0 -2.2 FIG01214273: hypothetical protein compare
Xcc-8004.564.1 -3.0 -1.8 Mobile element protein compare
Xcc-8004.5368.1 -3.0 -2.8 FIG01210868: hypothetical protein compare
Xcc-8004.1696.1 -3.0 -1.5 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.4738.1 -2.9 -9.1 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.4752.1 -2.8 -2.0 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.2387.1 -2.8 -2.9 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.4112.1 -2.7 -4.1 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.986.1 -2.6 -2.1 hypothetical protein compare
Xcc-8004.2922.1 -2.6 -1.5 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.195.1 -2.6 -1.0 phosphoesterase, putative compare
Xcc-8004.4982.1 -2.6 -2.1 Protein yjbJ compare
Xcc-8004.5166.1 -2.6 -2.5 hypothetical protein compare
Xcc-8004.659.1 -2.6 -2.5 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.2012.1 -2.6 -6.0 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.4231.1 -2.6 -1.0 two-component system regulatory protein compare
Xcc-8004.1455.1 -2.5 -3.7 hypothetical protein compare
Xcc-8004.1236.1 -2.5 -6.4 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.2879.1 -2.5 -0.9 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.1436.1 -2.5 -1.3 Holliday junction DNA helicase RuvA compare
Xcc-8004.1007.1 -2.5 -1.1 acetylxylan esterase compare
Xcc-8004.1365.1 -2.5 -0.7 FIG01211058: hypothetical protein compare
Xcc-8004.3832.1 -2.5 -2.4 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Xcc-8004.4204.1 -2.4 -2.5 FIG01210014: hypothetical protein compare
Xcc-8004.3728.1 -2.4 -1.1 hypothetical protein compare
Xcc-8004.3119.1 -2.4 -5.5 GTP-binding protein HflX compare
Xcc-8004.3324.1 -2.4 -4.0 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.2346.1 -2.4 -1.2 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.5202.1 -2.4 -5.0 Twin-arginine translocation protein TatC compare
Xcc-8004.2343.1 -2.4 -1.4 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.1229.1 -2.3 -2.4 hypothetical protein compare
Xcc-8004.3133.1 -2.3 -4.4 ortholog of Bordetella pertussis (BX470248) BP2475 compare
Xcc-8004.713.1 -2.3 -0.9 FIG01210186: hypothetical protein compare
Xcc-8004.1763.1 -2.3 -4.2 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.3976.1 -2.3 -3.9 2-methylaconitate cis-trans isomerase compare
Xcc-8004.127.1 -2.3 -1.3 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.2168.1 -2.3 -3.6 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Xcc-8004.2228.1 -2.3 -6.0 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Xcc-8004.3092.1 -2.2 -3.2 FIG01213027: hypothetical protein compare
Xcc-8004.950.1 -2.2 -1.2 General secretion pathway protein L compare
Xcc-8004.4225.1 -2.2 -1.5 Regulator of nucleoside diphosphate kinase compare
Xcc-8004.5398.1 -2.2 -2.1 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) compare
Xcc-8004.1241.1 -2.2 -3.7 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.955.1 -2.1 -3.0 Predicted transcriptional regulator of N-Acetylglucosamine utilization, LacI family compare
Xcc-8004.5125.1 -2.1 -4.7 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent compare
Xcc-8004.3201.1 -2.1 -1.2 hypothetical protein compare
Xcc-8004.2229.1 -2.1 -8.5 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Xcc-8004.4001.1 -2.1 -2.3 FIG146278: Maf/YceF/YhdE family protein compare
Xcc-8004.892.1 -2.1 -2.7 Coupling protein VirD4, ATPase required for T-DNA transfer compare
Xcc-8004.4844.1 -2.1 -0.8 FIG01210764: hypothetical protein compare
Xcc-8004.4879.1 -2.0 -3.7 FIG01209773: hypothetical protein compare
Xcc-8004.3710.1 -2.0 -1.6 hypothetical protein compare
Xcc-8004.3979.1 -2.0 -7.1 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.5012.1 -2.0 -2.4 FIG01211480: hypothetical protein compare
Xcc-8004.3815.1 -2.0 -3.0 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Xcc-8004.999.1 -2.0 -4.2 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2182.1 -2.0 -10.5 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.2110.1 -2.0 -1.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1221.1 -2.0 -3.2 Ribonuclease PH (EC 2.7.7.56) compare
Xcc-8004.1303.1 -2.0 -2.5 Inner membrane protein of type IV secretion of T-DNA complex, VirB6 compare
Xcc-8004.482.1 -1.9 -2.7 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Xcc-8004.340.1 -1.9 -1.5 Organic hydroperoxide resistance protein compare
Xcc-8004.235.1 -1.9 -2.5 ComA operon protein 2 compare
Xcc-8004.1437.1 -1.9 -5.7 Kup system potassium uptake protein compare
Xcc-8004.2672.1 -1.9 -1.4 hypothetical protein compare
Xcc-8004.279.1 -1.9 -3.0 FIG01210420: hypothetical protein compare
Xcc-8004.3310.1 -1.8 -4.5 Chromosome partition protein smc compare
Xcc-8004.4373.1 -1.8 -3.4 LppC putative lipoprotein compare
Xcc-8004.5071.1 -1.8 -3.3 FIG01210955: hypothetical protein compare
Xcc-8004.4605.1 -1.8 -1.3 FIG001943: hypothetical protein YajQ compare
Xcc-8004.4625.1 -1.8 -2.6 FIG01210439: hypothetical protein compare
Xcc-8004.5122.1 -1.8 -1.3 hypothetical protein compare
Xcc-8004.1587.1 -1.8 -1.8 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Xcc-8004.1395.1 -1.8 -2.3 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Xcc-8004.5189.1 -1.8 -1.3 FIG01212821: hypothetical protein compare
Xcc-8004.1162.1 -1.8 -2.1 FIG01210644: hypothetical protein compare
Xcc-8004.2910.1 -1.8 -3.9 Regulatory protein, RpfE type compare
Xcc-8004.130.1 -1.8 -6.1 hypothetical protein compare
Xcc-8004.2274.1 -1.8 -4.1 ATP-dependent 23S rRNA helicase DbpA compare
Xcc-8004.4025.1 -1.8 -6.3 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.3329.1 -1.7 -2.9 Exodeoxyribonuclease I (EC 3.1.11.1) compare
Xcc-8004.3473.1 -1.7 -1.0 FIG01213437: hypothetical protein compare
Xcc-8004.1396.1 -1.7 -1.7 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) / Cobyric acid synthase (EC 6.3.5.10) compare
Xcc-8004.5185.1 -1.7 -1.7 Gluconokinase (EC 2.7.1.12) compare
Xcc-8004.1249.1 -1.7 -3.4 Transcriptional regulator compare
Xcc-8004.2060.1 -1.7 -1.2 Mobile element protein compare
Xcc-8004.137.1 -1.7 -3.2 FIG01209674: hypothetical protein compare
Xcc-8004.318.1 -1.7 -4.7 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.2339.1 -1.7 -1.3 Cytochrome c heme lyase subunit CcmH compare
Xcc-8004.357.1 -1.6 -1.6 FIG01210225: hypothetical protein compare
Xcc-8004.1841.1 -1.6 -2.6 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) compare
Xcc-8004.271.1 -1.6 -1.8 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.48.1 -1.6 -1.4 FIG01212903: hypothetical protein compare
Xcc-8004.386.1 -1.6 -1.8 LysR family transcriptional regulator STM3121 compare
Xcc-8004.3451.1 -1.6 -1.5 hypothetical protein compare
Xcc-8004.2259.1 -1.6 -5.0 PhbF compare
Xcc-8004.2128.1 -1.6 -3.8 Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster compare
Xcc-8004.4026.1 -1.6 -2.7 FIG01209666: hypothetical protein compare
Xcc-8004.4820.1 -1.6 -1.0 FIG01211334: hypothetical protein compare
Xcc-8004.601.1 -1.6 -4.2 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.1247.1 -1.6 -2.9 Cysteine synthase (EC 2.5.1.47) compare
Xcc-8004.1521.1 -1.6 -1.2 FIG01209895: hypothetical protein compare
Xcc-8004.2055.1 -1.6 -1.0 Mobile element protein compare
Xcc-8004.3054.1 -1.5 -1.0 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.1118.1 -1.5 -0.8 hypothetical protein compare
Xcc-8004.1805.1 -1.5 -2.2 Transcriptional regulator, LysR family compare
Xcc-8004.1362.1 -1.5 -3.2 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) compare
Xcc-8004.4693.1 -1.5 -1.1 hypothetical protein compare
Xcc-8004.3816.1 -1.5 -5.0 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.861.1 -1.5 -3.2 FIG01211470: hypothetical protein compare
Xcc-8004.3471.1 -1.5 -1.1 FIG01211539: hypothetical protein compare
Xcc-8004.4922.1 -1.5 -4.3 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Xcc-8004.3040.1 -1.5 -2.6 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Xcc-8004.2358.1 -1.4 -5.0 Segregation and condensation protein A compare
Xcc-8004.574.1 -1.4 -5.7 Di-/tripeptide transporter compare
Xcc-8004.4241.1 -1.4 -1.2 cytidine and deoxycytidylate deaminase family protein compare
Xcc-8004.4477.1 -1.4 -1.3 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Xcc-8004.2694.1 -1.4 -3.0 hypothetical protein compare
Xcc-8004.948.1 -1.4 -0.9 General secretion pathway protein J compare
Xcc-8004.4814.1 -1.4 -1.5 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Xcc-8004.2495.1 -1.4 -1.1 hypothetical protein compare
Xcc-8004.1280.1 -1.4 -1.3 Ferredoxin, 2Fe-2S compare
Xcc-8004.2357.1 -1.4 -2.1 Segregation and condensation protein B compare
Xcc-8004.5167.1 -1.4 -1.8 L-fuconate dehydratase (EC 4.2.1.68) compare
Xcc-8004.1568.1 -1.4 -1.3 Glycine cleavage system H protein compare
Xcc-8004.3590.1 -1.4 -1.1 FIG01211013: hypothetical protein compare
Xcc-8004.1714.1 -1.4 -2.9 Twitching motility protein PilT compare
Xcc-8004.4789.1 -1.4 -4.3 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Xcc-8004.3442.1 -1.4 -1.2 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2579.1 -1.4 -1.4 Transcriptional regulator in PFGI-1-like cluster compare
Xcc-8004.3049.1 -1.4 -4.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.2074.1 -1.4 -2.7 Transcriptional regulator, MerR family compare
Xcc-8004.1606.1 -1.4 -2.5 FIG01211483: hypothetical protein compare
Xcc-8004.2011.1 -1.4 -1.9 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.739.1 -1.4 -2.5 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Xcc-8004.5199.1 -1.4 -1.3 hypothetical protein compare
Xcc-8004.4199.1 -1.4 -6.1 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Xcc-8004.4529.1 -1.4 -0.8 FIG01210979: hypothetical protein compare
Xcc-8004.5317.1 -1.4 -0.9 FIG01210332: hypothetical protein compare
Xcc-8004.4527.1 -1.4 -5.2 ATP-dependent RNA helicase RhlE compare
Xcc-8004.3363.1 -1.3 -3.3 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Xcc-8004.5087.1 -1.3 -1.5 FIG027190: Putative transmembrane protein compare
Xcc-8004.4920.1 -1.3 -5.6 POSSIBLE LINOLEOYL-CoA DESATURASE (DELTA(6)-DESATURASE) compare
Xcc-8004.1955.1 -1.3 -3.9 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.1251.1 -1.3 -2.7 hypothetical protein compare
Xcc-8004.5130.1 -1.3 -2.7 hypothetical protein compare
Xcc-8004.4250.1 -1.3 -1.4 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Xcc-8004.4416.1 -1.3 -4.2 hypothetical protein compare
Xcc-8004.197.1 -1.3 -2.1 rhamnogalacturonan acetylesterase compare
Xcc-8004.871.1 -1.3 -2.3 FIG01209691: hypothetical protein compare
Xcc-8004.3395.1 -1.3 -1.7 Transcriptional regulator, GntR family compare
Xcc-8004.2920.1 -1.3 -4.7 Ferrous iron transport protein B compare
Xcc-8004.2317.1 -1.3 -2.5 OsmC/Ohr family protein compare
Xcc-8004.171.1 -1.3 -0.7 hypothetical protein compare
Xcc-8004.3740.1 -1.3 -2.0 Type III secretion HpaB protein compare
Xcc-8004.2923.1 -1.3 -4.8 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.5019.1 -1.3 -0.8 FIG01210147: hypothetical protein compare
Xcc-8004.943.1 -1.3 -2.9 General secretion pathway protein E compare
Xcc-8004.1126.1 -1.3 -1.3 Electron transfer protein azurin I compare
Xcc-8004.2013.1 -1.3 -2.5 Superoxide dismutase [Fe] (EC 1.15.1.1) compare
Xcc-8004.1755.1 -1.3 -2.4 COG2879, Hypothetical small protein yjiX compare
Xcc-8004.1019.1 -1.3 -2.6 hypothetical protein compare
Xcc-8004.3923.1 -1.3 -1.1 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.5064.1 -1.3 -1.9 hypothetical protein compare
Xcc-8004.432.1 -1.3 -0.7 hypothetical protein compare
Xcc-8004.2282.1 -1.3 -2.0 tRNA:Cm32/Um32 methyltransferase compare
Xcc-8004.4301.1 -1.3 -3.1 Nucleoside permease NupC compare
Xcc-8004.1520.1 -1.2 -2.0 RebB protein compare
Xcc-8004.675.1 -1.2 -3.4 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) compare
Xcc-8004.878.1 -1.2 -3.0 Sugar kinase compare
Xcc-8004.4281.1 -1.2 -2.2 hypothetical protein compare
Xcc-8004.2294.1 -1.2 -1.6 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Xcc-8004.569.1 -1.2 -2.2 FIG01209918: hypothetical protein compare
Xcc-8004.4337.1 -1.2 -2.7 FIG01210643: hypothetical protein compare
Xcc-8004.3165.1 -1.2 -1.9 Glycosyltransferase (EC 2.4.1.-) compare
Xcc-8004.1222.1 -1.2 -1.0 Glyoxalase family protein compare


Specific Phenotypes

For 2 genes in this experiment

For in planta xylem Plant=Cauliflower; Treatment=None; Sample=xylem; Collection=Direct; Time=0_days in Xanthomonas campestris pv. campestris strain 8004

For in planta xylem Plant=Cauliflower; Treatment=None; Sample=xylem; Collection=Direct; Time=0_days across organisms