Experiment set8IT037 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 83.25 mM

200 most important genes:

  gene name fitness t score description  
BWI76_RS04465 -8.2 -5.7 carbamoyl-phosphate synthase small subunit compare
BWI76_RS18920 -8.2 -5.7 ATP phosphoribosyltransferase compare
BWI76_RS11965 -7.9 -5.0 orotidine-5'-phosphate decarboxylase compare
BWI76_RS05835 -7.9 -5.4 gamma-glutamyl-phosphate reductase compare
BWI76_RS00850 -7.8 -12.4 acetylglutamate kinase compare
BWI76_RS24285 -7.7 -10.5 cystathionine beta-lyase compare
BWI76_RS20965 -7.4 -5.0 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS09645 -7.0 -2.8 thioredoxin-disulfide reductase compare
BWI76_RS00785 -7.0 -6.8 cystathionine gamma-synthase compare
BWI76_RS01615 -7.0 -11.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS04470 -6.8 -12.3 carbamoyl phosphate synthase large subunit compare
BWI76_RS01655 -6.8 -7.3 homoserine O-succinyltransferase compare
BWI76_RS05840 -6.7 -8.0 glutamate 5-kinase compare
BWI76_RS26085 -6.7 -4.6 3-dehydroquinate synthase compare
BWI76_RS00805 -6.6 -5.4 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS18950 -6.6 -5.4 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS23220 -6.5 -11.5 amino-acid N-acetyltransferase compare
BWI76_RS00855 -6.4 -11.3 argininosuccinate lyase compare
BWI76_RS04160 -6.2 -6.1 phosphoserine phosphatase compare
BWI76_RS18940 -6.2 -7.2 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS21265 -6.2 -12.1 phosphoribosylformylglycinamidine synthase compare
BWI76_RS00990 -6.1 -10.4 ketol-acid reductoisomerase compare
BWI76_RS19845 -6.1 -7.8 phosphatase compare
BWI76_RS21475 -6.0 -4.8 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS04250 -5.9 -10.4 homoserine kinase compare
BWI76_RS00980 -5.8 -15.1 PLP-dependent threonine dehydratase compare
BWI76_RS18935 -5.8 -10.4 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS23920 -5.8 -4.2 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS20895 -5.7 -7.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS04675 -5.7 -6.2 3-isopropylmalate dehydrogenase compare
BWI76_RS27385 -5.7 -9.5 orotate phosphoribosyltransferase compare
BWI76_RS18930 -5.6 -5.7 histidinol-phosphate transaminase compare
BWI76_RS04670 -5.6 -11.0 3-isopropylmalate dehydratase large subunit compare
BWI76_RS04255 -5.6 -10.9 threonine synthase compare
BWI76_RS04665 -5.6 -19.3 3-isopropylmalate dehydratase small subunit compare
BWI76_RS11840 -5.5 -6.1 tryptophan synthase subunit alpha compare
BWI76_RS20350 -5.5 -5.2 amidophosphoribosyltransferase compare
BWI76_RS04245 -5.5 -17.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS11860 -5.4 -10.3 anthranilate synthase component I compare
BWI76_RS13920 -5.4 -7.8 magnesium-translocating P-type ATPase compare
BWI76_RS08385 -5.3 -6.3 citrate (Si)-synthase compare
BWI76_RS02995 -5.3 -12.1 aspartate carbamoyltransferase compare
BWI76_RS04240 -5.3 -2.3 thr operon leader peptide compare
BWI76_RS04685 -5.3 -15.3 putative leucine operon leader peptide compare
BWI76_RS07065 -5.3 -7.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS20355 -5.2 -3.7 colicin V production protein compare
BWI76_RS11850 -5.1 -9.1 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS25115 -5.1 -8.2 argininosuccinate synthase compare
BWI76_RS01610 -5.1 -5.7 phosphoribosylamine--glycine ligase compare
BWI76_RS09755 -5.1 -9.4 phosphoserine transaminase compare
BWI76_RS04680 -5.0 -13.0 2-isopropylmalate synthase compare
BWI76_RS09760 -5.0 -3.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS00835 -5.0 -12.5 phosphoenolpyruvate carboxylase compare
BWI76_RS00960 -4.9 -7.9 acetolactate synthase 2 catalytic subunit compare
BWI76_RS00975 -4.9 -8.8 dihydroxy-acid dehydratase compare
BWI76_RS25645 -4.9 -9.7 shikimate dehydrogenase compare
BWI76_RS09910 -4.8 -16.4 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS00400 -4.8 -3.3 glutamine synthetase compare
BWI76_RS18925 -4.7 -3.2 histidinol dehydrogenase compare
BWI76_RS07070 -4.7 -7.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS11855 -4.7 -6.6 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS03010 -4.6 -7.9 ornithine carbamoyltransferase compare
BWI76_RS23365 -4.6 -10.6 LysR family transcriptional regulator compare
BWI76_RS00180 -4.4 -2.5 F0F1 ATP synthase subunit epsilon compare
BWI76_RS18955 -4.4 -6.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS26000 -4.3 -11.6 aspartate aminotransferase family protein compare
BWI76_RS20435 -4.3 -2.4 chorismate synthase compare
BWI76_RS00845 -4.3 -7.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS04645 -4.2 -6.8 3-dehydroquinase compare
BWI76_RS11845 -4.2 -5.2 tryptophan synthase subunit beta compare
BWI76_RS17975 -4.0 -7.1 tail-specific protease compare
BWI76_RS06525 -3.8 -6.9 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS09660 -3.8 -2.6 DNA translocase FtsK compare
BWI76_RS23240 -3.8 -3.7 exonuclease V subunit gamma compare
BWI76_RS10990 -3.7 -2.8 dihydroorotase compare
BWI76_RS04525 -3.6 -3.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS01200 -3.6 -4.2 diaminopimelate epimerase compare
BWI76_RS23360 -3.6 -4.7 diaminopimelate decarboxylase compare
BWI76_RS01275 -3.5 -9.7 LysR family transcriptional regulator compare
BWI76_RS15115 -3.5 -7.2 MFS transporter compare
BWI76_RS04510 -3.4 -2.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS26940 -3.3 -7.2 transcriptional regulator compare
BWI76_RS21465 -3.2 -3.0 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS23265 -3.0 -4.7 hypothetical protein compare
BWI76_RS15225 -3.0 -2.0 DeoR family transcriptional regulator compare
BWI76_RS00965 -3.0 -2.1 acetolactate synthase 2 small subunit compare
BWI76_RS01210 -3.0 -3.7 tyrosine recombinase XerC compare
BWI76_RS27390 -2.8 -3.5 ribonuclease PH compare
BWI76_RS23230 -2.8 -3.8 exodeoxyribonuclease V subunit beta compare
BWI76_RS05015 -2.8 -4.7 transcriptional regulator compare
BWI76_RS00985 -2.8 -5.6 transcriptional regulator IlvY compare
BWI76_RS09635 -2.7 -3.2 amino acid ABC transporter ATP-binding protein compare
BWI76_RS04530 -2.7 -3.2 peptidylprolyl isomerase SurA compare
BWI76_RS02735 -2.6 -5.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS19840 -2.5 -2.0 hypothetical protein compare
BWI76_RS24400 -2.5 -7.1 outer membrane channel protein TolC compare
BWI76_RS02530 -2.4 -3.8 tRNA dimethylallyltransferase compare
BWI76_RS05450 -2.3 -2.5 ribonuclease HI compare
BWI76_RS05260 -2.3 -2.6 chaperone compare
BWI76_RS25225 -2.3 -4.8 ABC transporter permease compare
BWI76_RS17720 -2.2 -1.5 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS26570 -2.1 -4.1 anion permease compare
BWI76_RS24850 -2.1 -5.9 DeoR family transcriptional regulator compare
BWI76_RS06530 -2.1 -10.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS25315 -2.1 -10.0 glutamate synthase large subunit compare
BWI76_RS20650 -2.0 -3.1 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS25320 -2.0 -7.0 glutamate synthase compare
BWI76_RS06765 -2.0 -3.7 transcriptional regulator compare
BWI76_RS00345 -1.9 -3.5 protein disulfide oxidoreductase DsbA compare
BWI76_RS22755 -1.9 -6.9 phosphoadenosine phosphosulfate reductase compare
BWI76_RS15850 -1.9 -1.2 DUF1317 domain-containing protein compare
BWI76_RS02815 -1.9 -3.4 fructose-bisphosphatase class I compare
BWI76_RS16965 -1.9 -4.1 murein lipoprotein compare
BWI76_RS09640 -1.8 -3.0 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS08495 -1.8 -5.4 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS21070 -1.8 -2.9 outer membrane protein assembly factor BamB compare
BWI76_RS21140 -1.8 -2.9 molecular chaperone HscA compare
BWI76_RS20475 -1.8 -6.2 phospholipid-binding lipoprotein MlaA compare
BWI76_RS26455 -1.7 -4.7 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS04705 -1.7 -5.2 DNA-binding transcriptional regulator FruR compare
BWI76_RS19375 -1.7 -2.3 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS25220 -1.7 -2.9 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS26620 -1.6 -1.7 Fe-S biogenesis protein NfuA compare
BWI76_RS15110 -1.6 -9.5 putative excinuclease ABC subunit A compare
BWI76_RS25230 -1.6 -4.9 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS17980 -1.6 -3.0 RNA chaperone ProQ compare
BWI76_RS01800 -1.6 -5.6 glucose-6-phosphate isomerase compare
BWI76_RS25215 -1.6 -6.6 phospholipid-binding protein MlaC compare
BWI76_RS09655 -1.6 -5.6 leucine-responsive regulatory protein compare
BWI76_RS26075 -1.6 -3.2 DNA adenine methylase compare
BWI76_RS01350 -1.6 -1.6 NAD(P)H-flavin reductase compare
BWI76_RS00390 -1.5 -4.2 two-component system sensor histidine kinase NtrB compare
BWI76_RS13915 -1.5 -3.3 magnesium transport protein MgtC compare
BWI76_RS23480 -1.5 -7.7 EAL domain-containing protein compare
BWI76_RS02580 -1.5 -2.6 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS00385 -1.5 -8.2 nitrogen assimilation regulatory protein compare
BWI76_RS00970 -1.5 -2.7 branched chain amino acid aminotransferase compare
BWI76_RS13595 -1.5 -3.3 transcriptional regulator compare
BWI76_RS25065 -1.4 -3.0 polyribonucleotide nucleotidyltransferase compare
BWI76_RS01280 -1.4 -9.3 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
BWI76_RS23885 -1.4 -1.6 2-octaprenylphenol hydroxylase compare
BWI76_RS15840 -1.4 -2.1 prophage protein compare
BWI76_RS25335 -1.4 -3.2 stringent starvation protein A compare
BWI76_RS21350 -1.4 -4.0 anti-RNA polymerase sigma factor SigE compare
BWI76_RS00380 -1.3 -7.2 oxygen-independent coproporphyrinogen III oxidase compare
BWI76_RS25425 -1.3 -1.9 arginine repressor compare
BWI76_RS20440 -1.3 -1.5 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS27165 -1.3 -2.7 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS21480 -1.3 -2.5 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS05200 -1.3 -2.5 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS15975 -1.3 -1.4 hypothetical protein compare
BWI76_RS19770 -1.3 -2.0 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS01555 -1.3 -8.9 phosphomethylpyrimidine synthase ThiC compare
BWI76_RS26460 -1.3 -5.3 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS05120 -1.3 -7.7 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS08525 -1.3 -2.6 colicin transporter compare
BWI76_RS16535 -1.3 -5.8 MATE family efflux transporter conserved
BWI76_RS01540 -1.2 -1.9 thiamine biosynthesis protein ThiS compare
BWI76_RS07185 -1.2 -2.7 hypothetical protein compare
BWI76_RS01550 -1.2 -3.6 thiamine phosphate synthase compare
BWI76_RS15830 -1.2 -2.1 hypothetical protein compare
BWI76_RS19670 -1.2 -2.6 S-formylglutathione hydrolase compare
BWI76_RS20390 -1.2 -1.7 erythronate-4-phosphate dehydrogenase compare
BWI76_RS20360 -1.2 -1.4 cell division protein DedD compare
BWI76_RS09190 -1.2 -4.4 hypothetical protein compare
BWI76_RS22690 -1.2 -1.9 adenylyl-sulfate kinase compare
BWI76_RS06770 -1.2 -7.5 Hha toxicity attenuator compare
BWI76_RS01530 -1.1 -4.6 2-iminoacetate synthase ThiH compare
BWI76_RS02410 -1.1 -2.1 EF-P beta-lysylation protein EpmB compare
BWI76_RS01330 -1.1 -3.2 twin-arginine translocase subunit TatC compare
BWI76_RS26665 -1.1 -2.9 DNA-binding response regulator compare
BWI76_RS19380 -1.0 -2.2 hydroxyethylthiazole kinase compare
BWI76_RS22760 -1.0 -3.9 sulfite reductase subunit beta compare
BWI76_RS01545 -1.0 -2.9 thiamine biosynthesis protein ThiS compare
BWI76_RS08665 -1.0 -4.7 6-phosphogluconolactonase compare
BWI76_RS18165 -1.0 -1.6 NUDIX pyrophosphatase compare
BWI76_RS25060 -1.0 -2.6 lipoprotein NlpI compare
BWI76_RS20640 -1.0 -3.3 cysteine synthase A compare
BWI76_RS25960 -1.0 -4.0 NUDIX hydrolase compare
BWI76_RS21505 -0.9 -1.3 hypothetical protein compare
BWI76_RS06800 -0.9 -1.4 DUF2496 domain-containing protein compare
BWI76_RS01385 -0.9 -1.9 potassium transporter compare
BWI76_RS00140 -0.9 -1.3 phosphate transport system regulator PhoU compare
BWI76_RS22765 -0.9 -4.8 sulfite reductase subunit alpha compare
BWI76_RS24075 -0.9 -2.9 glutathione synthase compare
BWI76_RS06535 -0.9 -3.6 endopeptidase La compare
BWI76_RS24025 -0.9 -4.6 agmatinase compare
BWI76_RS08520 -0.9 -1.8 colicin transporter TolQ compare
BWI76_RS01535 -0.9 -5.5 thiazole synthase compare
BWI76_RS25505 -0.9 -3.9 RNase E specificity factor CsrD compare
BWI76_RS26175 -0.9 -2.9 DeoR/GlpR family transcriptional regulator compare
BWI76_RS04955 -0.9 -1.4 hypoxanthine phosphoribosyltransferase compare
BWI76_RS26775 -0.9 -3.3 endo-1,4-D-glucanase compare
BWI76_RS08580 -0.9 -2.8 quinolinate synthetase compare
BWI76_RS17290 -0.9 -3.9 formyltetrahydrofolate deformylase compare
BWI76_RS02320 -0.9 -3.3 divalent ion tolerance protein CutA compare
BWI76_RS23915 -0.9 -2.3 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS18710 -0.8 -6.0 GGDEF-domain containing protein compare
BWI76_RS20910 -0.8 -2.9 glycine cleavage system transcriptional repressor compare
BWI76_RS04100 -0.8 -3.2 peptide chain release factor 3 compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms