Experiment set8IT037 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 83.25 mM

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS17770 +1.0 2.2 isomerase/hydrolase compare
BWI76_RS14320 +1.0 2.9 hypothetical protein compare
BWI76_RS00025 +0.9 1.5 hypothetical protein compare
BWI76_RS24575 +0.9 2.7 hypothetical protein compare
BWI76_RS18605 +0.9 2.6 oxidoreductase molybdopterin-binding protein compare
BWI76_RS23325 +0.8 3.2 hypothetical protein compare
BWI76_RS18335 +0.7 6.0 DNA-binding response regulator compare
BWI76_RS06335 +0.7 2.3 nucleoside-specific channel-forming protein Tsx compare
BWI76_RS08230 +0.7 2.7 hypothetical protein compare
BWI76_RS19330 +0.7 1.3 HAD family hydrolase compare
BWI76_RS22450 +0.7 1.4 selenoprotein W-related protein compare
BWI76_RS10055 +0.6 1.1 AraC family transcriptional regulator compare
BWI76_RS18175 +0.6 2.0 hydrolase compare
BWI76_RS11635 +0.6 1.9 ABC transporter compare
BWI76_RS02745 +0.6 1.5 hypothetical protein compare
BWI76_RS15260 +0.6 1.8 hypothetical protein compare
BWI76_RS10820 +0.6 1.8 iron uptake system protein EfeO compare
BWI76_RS15190 +0.6 3.4 GGDEF domain-containing protein compare
BWI76_RS18060 +0.6 2.4 hypothetical protein compare
BWI76_RS06325 +0.6 1.2 hypothetical protein compare
BWI76_RS16315 +0.6 1.0 SirA-like protein compare
BWI76_RS13420 +0.6 1.2 ABC transporter permease compare
BWI76_RS10730 +0.6 1.8 bifunctional glucose-1-phosphatase/inositol phosphatase compare
BWI76_RS16090 +0.6 1.8 two-component system response regulator DcuR compare
BWI76_RS18780 +0.6 1.4 D-alanyl-D-alanine carboxypeptidase compare
BWI76_RS15620 +0.6 1.8 hypothetical protein compare
BWI76_RS16920 +0.6 1.9 3-(2,3-dihydroxyphenyl)propionate dioxygenase compare
BWI76_RS17565 +0.6 2.0 hypothetical protein compare
BWI76_RS10380 +0.6 0.9 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS16190 +0.6 1.9 universal stress protein UspE compare
BWI76_RS06340 +0.6 1.2 hypothetical protein compare
BWI76_RS16950 +0.6 1.5 TetR family transcriptional regulator compare
BWI76_RS18430 +0.6 1.5 hypothetical protein compare
BWI76_RS09455 +0.6 2.1 YbjN domain-containing protein compare
BWI76_RS16150 +0.6 1.0 IclR family transcriptional regulator compare
BWI76_RS17970 +0.6 2.2 zinc metalloprotease HtpX compare
BWI76_RS04595 +0.6 2.7 DNA-binding transcriptional regulator AraC compare
BWI76_RS10575 +0.5 0.7 polar amino acid ABC transporter permease compare
BWI76_RS15345 +0.5 3.3 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
BWI76_RS12550 +0.5 1.8 hypothetical protein compare
BWI76_RS05655 +0.5 1.5 hypothetical protein compare
BWI76_RS17390 +0.5 1.0 DsrE family protein compare
BWI76_RS18225 +0.5 1.8 universal stress protein C compare
BWI76_RS16525 +0.5 1.4 cyclopropane-fatty-acyl-phospholipid synthase compare
BWI76_RS08735 +0.5 3.4 Urocanate hydratase (EC 4.2.1.49) (from data) compare
BWI76_RS13400 +0.5 2.1 GntR family transcriptional regulator compare
BWI76_RS26045 +0.5 1.0 nitrite reductase small subunit compare
BWI76_RS02045 +0.5 2.1 LysR family transcriptional regulator compare
BWI76_RS15980 +0.5 1.7 lysine transporter LysE compare
BWI76_RS12825 +0.5 1.9 hypothetical protein compare
BWI76_RS15050 +0.5 1.7 sugar transporter compare
BWI76_RS12170 +0.5 2.1 hypothetical protein compare
BWI76_RS09560 +0.5 1.0 DoxX family membrane protein compare
BWI76_RS23320 +0.5 1.3 hypothetical protein compare
BWI76_RS14000 +0.5 2.6 glutamine amidotransferase compare
BWI76_RS22815 +0.5 4.2 hybrid sensor histidine kinase/response regulator compare
BWI76_RS26890 +0.5 1.1 hypothetical protein compare
BWI76_RS01690 +0.5 1.4 membrane protein compare
BWI76_RS10500 +0.5 1.3 flavoprotein monooxygenase compare
BWI76_RS16500 +0.5 1.7 superoxide dismutase [Fe] compare
BWI76_RS12225 +0.5 2.1 hypothetical protein compare
BWI76_RS14435 +0.5 0.9 glutamine ABC transporter ATP-binding protein compare
BWI76_RS17200 +0.5 1.2 hypothetical protein compare
BWI76_RS01585 +0.5 2.7 transcriptional regulator compare
BWI76_RS24770 +0.5 2.3 hypothetical protein compare
BWI76_RS17675 +0.5 1.5 hypothetical protein compare
BWI76_RS04560 +0.5 2.4 holo-ACP synthase CitX compare
BWI76_RS09830 +0.5 1.5 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM compare
BWI76_RS12155 +0.5 2.0 hypothetical protein compare
BWI76_RS04165 +0.5 2.4 DNA repair protein RadA compare
BWI76_RS05045 +0.5 1.6 general secretion pathway protein GspM compare
BWI76_RS21015 +0.5 2.3 LysR family transcriptional regulator compare
BWI76_RS13370 +0.5 2.5 hypothetical protein compare
BWI76_RS22850 +0.5 1.9 tRNA pseudouridine synthase TruC compare
BWI76_RS20430 +0.5 2.1 penicillin-insensitive murein endopeptidase compare
BWI76_RS09490 +0.5 1.9 DNA-binding response regulator compare
BWI76_RS20225 +0.5 3.0 hypothetical protein compare
BWI76_RS18240 +0.5 1.1 L-arabinose ABC transporter permease AraH compare
BWI76_RS15825 +0.4 0.6 hypothetical protein compare
BWI76_RS23470 +0.4 3.8 hypothetical protein compare
BWI76_RS17420 +0.4 2.8 hypothetical protein compare
BWI76_RS15760 +0.4 1.1 hypothetical protein compare
BWI76_RS12695 +0.4 1.7 zinc transporter ZntB compare
BWI76_RS22860 +0.4 1.8 SecY-interacting protein compare
BWI76_RS24270 +0.4 0.9 membrane protein compare
BWI76_RS12405 +0.4 2.5 diguanylate phosphodiesterase compare
BWI76_RS20735 +0.4 2.5 N-acetylmuramoyl-L-alanine amidase compare
BWI76_RS08455 +0.4 1.4 glutaminase compare
BWI76_RS18065 +0.4 1.3 DNA polymerase III subunit theta compare
BWI76_RS23050 +0.4 1.4 cobalt-precorrin-3B C(17)-methyltransferase compare
BWI76_RS21490 +0.4 3.1 GGDEF domain-containing protein compare
BWI76_RS08980 +0.4 0.8 DNA starvation/stationary phase protection protein compare
BWI76_RS12870 +0.4 1.6 putative phytanoyl-CoA dioxygenase compare
BWI76_RS27670 +0.4 1.4 LysR family transcriptional regulator compare
BWI76_RS06475 +0.4 1.0 protoheme IX farnesyltransferase compare
BWI76_RS16580 +0.4 1.9 ubiquinol oxidase subunit II compare
BWI76_RS13950 +0.4 1.7 hypothetical protein compare
BWI76_RS14015 +0.4 1.8 L-2,4-diaminobutyrate decarboxylase compare
BWI76_RS15015 +0.4 1.0 DUF2132 domain-containing protein compare
BWI76_RS12780 +0.4 1.4 hypothetical protein compare
BWI76_RS17400 +0.4 0.9 transporter compare
BWI76_RS26920 +0.4 2.4 DNA-3-methyladenine glycosylase I compare
BWI76_RS03180 +0.4 0.8 phage transcriptional regulator, AlpA compare
BWI76_RS02595 +0.4 1.2 hypothetical protein compare
BWI76_RS08645 +0.4 1.7 molybdate ABC transporter substrate-binding protein compare
BWI76_RS06510 +0.4 1.9 BolA family transcriptional regulator compare
BWI76_RS20460 +0.4 1.4 acetyl-CoA C-acyltransferase FadI compare
BWI76_RS09255 +0.4 0.8 hypothetical protein compare
BWI76_RS10255 +0.4 2.2 dihydrodipicolinate synthase family protein compare
BWI76_RS25630 +0.4 1.9 hypothetical protein compare
BWI76_RS26150 +0.4 0.9 molecular chaperone Hsp33 compare
BWI76_RS19805 +0.4 1.8 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS24750 +0.4 1.9 membrane protein compare
BWI76_RS04115 +0.4 1.4 patatin family protein compare
BWI76_RS19215 +0.4 1.1 proline-specific peptidase compare
BWI76_RS07740 +0.4 0.8 Fe2+-enterobactin ABC transporter substrate-binding protein compare
BWI76_RS17820 +0.4 1.8 hypothetical protein compare
BWI76_RS12145 +0.4 1.3 hypothetical protein compare
BWI76_RS26520 +0.4 1.8 nickel import ATP-binding protein NikE compare
BWI76_RS00950 +0.4 1.9 ATP-dependent protease compare
BWI76_RS11300 +0.4 0.8 cupin compare
BWI76_RS10640 +0.4 1.5 AraC family transcriptional regulator compare
BWI76_RS16655 +0.4 2.9 CatA-like O-acetyltransferase compare
BWI76_RS21445 +0.4 1.2 hypothetical protein compare
BWI76_RS09625 +0.4 1.0 hypothetical protein compare
BWI76_RS26130 +0.4 2.0 ADP compounds hydrolase NudE compare
BWI76_RS18855 +0.4 1.1 cysteine desulfurase NifS compare
BWI76_RS23030 +0.4 1.4 cobalamin biosynthesis protein CbiM compare
BWI76_RS07855 +0.4 1.5 PucR family transcriptional regulator compare
BWI76_RS10920 +0.4 2.2 putative TetR family transcriptional regulator compare
BWI76_RS05010 +0.4 0.7 tRNA glutamyl-Q synthetase compare
BWI76_RS25420 +0.4 1.8 malate dehydrogenase compare
BWI76_RS19980 +0.4 1.8 2-keto-3-deoxy-L-rhamnonate aldolase compare
BWI76_RS22440 +0.4 1.6 iron ABC transporter permease compare
BWI76_RS08370 +0.4 1.4 membrane protein compare
BWI76_RS05430 +0.4 2.2 UbiE/COQ5 family methyltransferase compare
BWI76_RS23760 +0.4 1.0 tRNA-Gly compare
BWI76_RS04425 +0.4 1.5 oxaloacetate decarboxylase subunit gamma compare
BWI76_RS20725 +0.4 1.7 GNAT family acetyltransferase compare
BWI76_RS12895 +0.4 1.2 hypothetical protein compare
BWI76_RS23705 +0.4 1.4 2-deoxy-D-ribonyl-CoA 3-dehydrogenase (from data) compare
BWI76_RS14050 +0.4 1.3 AP endonuclease, family 2 compare
BWI76_RS19785 +0.4 1.5 microcin C ABC transporter permease YejB compare
BWI76_RS06130 +0.4 1.4 extensin family protein compare
BWI76_RS11525 +0.4 0.9 HNH endonuclease compare
BWI76_RS00505 +0.4 1.3 PTS system, sorbose-specific IIB component compare
BWI76_RS12600 +0.4 1.2 MFS transporter compare
BWI76_RS25380 +0.4 1.4 oxaloacetate decarboxylase subunit beta compare
BWI76_RS05975 +0.4 1.2 ABC transporter ATP-binding protein compare
BWI76_RS03015 +0.4 1.5 RNase E inhibitor protein compare
BWI76_RS06030 +0.4 2.2 homocysteine S-methyltransferase compare
BWI76_RS18305 +0.4 2.0 dihydrodipicolinate synthase family protein compare
BWI76_RS00745 +0.4 2.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
BWI76_RS08380 +0.4 0.8 endonuclease VIII compare
BWI76_RS06635 +0.4 1.3 methylated-DNA--protein-cysteine methyltransferase compare
BWI76_RS19190 +0.4 2.3 oligopeptide/dipeptide ABC transporter ATPase compare
BWI76_RS11345 +0.4 1.7 LysR family transcriptional regulator compare
BWI76_RS12575 +0.4 1.9 FAD-dependent oxidoreductase compare
BWI76_RS21850 +0.4 2.1 AraC family transcriptional regulator compare
BWI76_RS16905 +0.3 1.2 acetaldehyde dehydrogenase (acetylating) compare
BWI76_RS14780 +0.3 1.6 phosphotriesterase compare
BWI76_RS11725 +0.3 1.5 PTS sugar transporter subunit IIB compare
BWI76_RS16290 +0.3 0.9 Mal regulon transcriptional regulator MalI compare
BWI76_RS24945 +0.3 0.7 glutamine amidotransferase compare
BWI76_RS23505 +0.3 3.2 ferrous iron transporter B compare
BWI76_RS06290 +0.3 1.2 ACP phosphodiesterase compare
BWI76_RS23970 +0.3 1.4 mechanosensitive ion channel protein MscS compare
BWI76_RS13805 +0.3 1.7 inorganic diphosphatase compare
BWI76_RS00120 +0.3 1.7 glucosamine-6-phosphate deaminase compare
BWI76_RS07160 +0.3 1.7 MBL fold hydrolase compare
BWI76_RS14665 +0.3 1.4 minor fimbrial subunit YfcQ compare
BWI76_RS02655 +0.3 1.0 hypothetical protein compare
BWI76_RS19405 +0.3 1.1 LysR family transcriptional regulator compare
BWI76_RS00995 +0.3 1.3 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS16660 +0.3 1.8 SfnB family sulfur acquisition oxidoreductase compare
BWI76_RS26835 +0.3 2.0 hypothetical protein compare
BWI76_RS12205 +0.3 0.9 hypothetical protein compare
BWI76_RS18800 +0.3 1.6 transcriptional regulator compare
BWI76_RS06470 +0.3 1.6 hypothetical protein compare
BWI76_RS02870 +0.3 1.3 hypothetical protein compare
BWI76_RS15350 +0.3 0.7 hypothetical protein compare
BWI76_RS14230 +0.3 1.5 flavin monoamine oxidase family protein compare
BWI76_RS13710 +0.3 1.2 benzoate 1,2-dioxygenase small subunit compare
BWI76_RS05645 +0.3 1.2 fructuronate reductase compare
BWI76_RS24630 +0.3 1.7 putrescine aminotransferase compare
BWI76_RS09705 +0.3 1.4 transketolase compare
BWI76_RS01225 +0.3 1.3 magnesium transporter CorA compare
BWI76_RS16075 +0.3 0.7 oxidoreductase compare
BWI76_RS18770 +0.3 0.6 DNA gyrase inhibitor compare
BWI76_RS07725 +0.3 0.7 iron-enterobactin transporter permease compare
BWI76_RS07385 +0.3 1.3 short-chain dehydrogenase/reductase SDR compare
BWI76_RS21930 +0.3 2.6 LysR family transcriptional regulator compare
BWI76_RS09155 +0.3 2.1 undecaprenyl-diphosphatase compare
BWI76_RS08250 +0.3 1.8 tricarballylate utilization protein B compare
BWI76_RS13965 +0.3 1.3 binding-protein-dependent transport system inner membrane protein compare
BWI76_RS24330 +0.3 1.4 TIGR00156 family protein compare
BWI76_RS18410 +0.3 0.8 drug/metabolite exporter YedA compare
BWI76_RS04770 +0.3 1.9 D-alanine--D-alanine ligase compare
BWI76_RS26105 +0.3 1.9 hypothetical protein compare
BWI76_RS20480 +0.3 2.3 formate/nitrite transporter compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms