Experiment set8IT036 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.33x; and D-Glucose 74 mM

200 most important genes:

  gene name fitness t score description  
BWI76_RS11965 -7.6 -5.5 orotidine-5'-phosphate decarboxylase compare
BWI76_RS05835 -7.6 -5.2 gamma-glutamyl-phosphate reductase compare
BWI76_RS18950 -7.4 -4.4 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS04465 -7.0 -6.8 carbamoyl-phosphate synthase small subunit compare
BWI76_RS23360 -6.9 -4.8 diaminopimelate decarboxylase compare
BWI76_RS10990 -6.9 -4.2 dihydroorotase compare
BWI76_RS09645 -6.9 -3.0 thioredoxin-disulfide reductase compare
BWI76_RS07070 -6.8 -6.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS04160 -6.8 -6.2 phosphoserine phosphatase compare
BWI76_RS04470 -6.8 -10.4 carbamoyl phosphate synthase large subunit compare
BWI76_RS18940 -6.8 -8.1 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS01325 -6.8 -4.7 twin-arginine translocase subunit TatB compare
BWI76_RS04525 -6.8 -4.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS11860 -6.6 -8.0 anthranilate synthase component I compare
BWI76_RS20895 -6.6 -6.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS11855 -6.5 -9.2 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS07065 -6.5 -9.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS26085 -6.4 -4.4 3-dehydroquinate synthase compare
BWI76_RS00855 -6.3 -11.4 argininosuccinate lyase compare
BWI76_RS04675 -6.3 -7.4 3-isopropylmalate dehydrogenase compare
BWI76_RS23220 -6.3 -8.3 amino-acid N-acetyltransferase compare
BWI76_RS13920 -6.3 -10.5 magnesium-translocating P-type ATPase compare
BWI76_RS01615 -6.3 -12.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS09755 -6.3 -9.9 phosphoserine transaminase compare
BWI76_RS04665 -6.3 -21.7 3-isopropylmalate dehydratase small subunit compare
BWI76_RS20350 -6.2 -5.1 amidophosphoribosyltransferase compare
BWI76_RS04250 -6.2 -8.6 homoserine kinase compare
BWI76_RS19845 -6.1 -7.5 phosphatase compare
BWI76_RS23920 -6.1 -5.2 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS18955 -6.0 -6.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS26570 -6.0 -4.1 anion permease compare
BWI76_RS25115 -6.0 -9.6 argininosuccinate synthase compare
BWI76_RS04670 -6.0 -11.5 3-isopropylmalate dehydratase large subunit compare
BWI76_RS00990 -6.0 -10.1 ketol-acid reductoisomerase compare
BWI76_RS20965 -5.9 -6.7 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS20355 -5.8 -3.7 colicin V production protein compare
BWI76_RS00845 -5.8 -10.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS21265 -5.8 -12.4 phosphoribosylformylglycinamidine synthase compare
BWI76_RS04685 -5.7 -11.8 putative leucine operon leader peptide compare
BWI76_RS04255 -5.7 -8.8 threonine synthase compare
BWI76_RS05840 -5.6 -5.5 glutamate 5-kinase compare
BWI76_RS11840 -5.6 -5.0 tryptophan synthase subunit alpha compare
BWI76_RS11845 -5.6 -2.3 tryptophan synthase subunit beta compare
BWI76_RS01655 -5.5 -9.0 homoserine O-succinyltransferase compare
BWI76_RS04245 -5.5 -15.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS21475 -5.5 -6.7 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS19840 -5.5 -2.4 hypothetical protein compare
BWI76_RS18935 -5.5 -7.4 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS04680 -5.4 -12.9 2-isopropylmalate synthase compare
BWI76_RS00965 -5.4 -2.3 acetolactate synthase 2 small subunit compare
BWI76_RS18925 -5.4 -5.0 histidinol dehydrogenase compare
BWI76_RS00785 -5.4 -8.2 cystathionine gamma-synthase compare
BWI76_RS00960 -5.2 -6.6 acetolactate synthase 2 catalytic subunit compare
BWI76_RS00850 -5.2 -8.8 acetylglutamate kinase compare
BWI76_RS00835 -5.2 -12.7 phosphoenolpyruvate carboxylase compare
BWI76_RS00980 -5.2 -10.7 PLP-dependent threonine dehydratase compare
BWI76_RS24400 -5.2 -8.4 outer membrane channel protein TolC compare
BWI76_RS25645 -5.1 -9.8 shikimate dehydrogenase compare
BWI76_RS09760 -5.1 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS04645 -5.1 -6.6 3-dehydroquinase compare
BWI76_RS04240 -5.1 -2.3 thr operon leader peptide compare
BWI76_RS11850 -5.0 -8.6 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS00975 -4.8 -7.7 dihydroxy-acid dehydratase compare
BWI76_RS20475 -4.7 -5.4 phospholipid-binding lipoprotein MlaA compare
BWI76_RS23365 -4.7 -9.0 LysR family transcriptional regulator compare
BWI76_RS03010 -4.7 -6.6 ornithine carbamoyltransferase compare
BWI76_RS00805 -4.6 -5.9 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS25230 -4.6 -6.0 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS02995 -4.6 -7.9 aspartate carbamoyltransferase compare
BWI76_RS01610 -4.6 -7.3 phosphoribosylamine--glycine ligase compare
BWI76_RS00400 -4.5 -3.1 glutamine synthetase compare
BWI76_RS01800 -4.5 -6.5 glucose-6-phosphate isomerase compare
BWI76_RS26000 -4.5 -10.6 aspartate aminotransferase family protein compare
BWI76_RS02530 -4.5 -4.4 tRNA dimethylallyltransferase compare
BWI76_RS01210 -4.5 -3.4 tyrosine recombinase XerC compare
BWI76_RS18930 -4.4 -6.5 histidinol-phosphate transaminase compare
BWI76_RS24285 -4.3 -6.5 cystathionine beta-lyase compare
BWI76_RS09910 -4.3 -16.5 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS04530 -4.3 -2.9 peptidylprolyl isomerase SurA compare
BWI76_RS08385 -4.3 -3.6 citrate (Si)-synthase compare
BWI76_RS15115 -4.2 -5.8 MFS transporter compare
BWI76_RS23240 -4.2 -2.9 exonuclease V subunit gamma compare
BWI76_RS25215 -4.2 -5.7 phospholipid-binding protein MlaC compare
BWI76_RS25225 -4.0 -7.3 ABC transporter permease compare
BWI76_RS27385 -4.0 -7.7 orotate phosphoribosyltransferase compare
BWI76_RS20650 -3.9 -2.7 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS18920 -3.8 -4.8 ATP phosphoribosyltransferase compare
BWI76_RS00345 -3.7 -6.2 protein disulfide oxidoreductase DsbA compare
BWI76_RS21465 -3.7 -3.9 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS09660 -3.6 -2.5 DNA translocase FtsK compare
BWI76_RS26940 -3.6 -8.5 transcriptional regulator compare
BWI76_RS01350 -3.4 -2.1 NAD(P)H-flavin reductase compare
BWI76_RS00985 -3.4 -5.7 transcriptional regulator IlvY compare
BWI76_RS06525 -3.3 -5.7 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS23230 -3.3 -3.2 exodeoxyribonuclease V subunit beta compare
BWI76_RS01330 -3.2 -5.8 twin-arginine translocase subunit TatC compare
BWI76_RS05015 -3.1 -3.7 transcriptional regulator compare
BWI76_RS08495 -3.0 -4.9 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS04510 -3.0 -3.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS01275 -3.0 -10.2 LysR family transcriptional regulator compare
BWI76_RS17975 -2.9 -4.3 tail-specific protease compare
BWI76_RS20435 -2.9 -2.3 chorismate synthase compare
BWI76_RS25065 -2.8 -4.8 polyribonucleotide nucleotidyltransferase compare
BWI76_RS27390 -2.8 -4.1 ribonuclease PH compare
BWI76_RS01185 -2.7 -3.6 adenylate cyclase compare
BWI76_RS15225 -2.6 -2.5 DeoR family transcriptional regulator compare
BWI76_RS05260 -2.6 -2.5 chaperone compare
BWI76_RS23265 -2.6 -3.2 hypothetical protein compare
BWI76_RS26665 -2.5 -3.1 DNA-binding response regulator compare
BWI76_RS26670 -2.5 -7.1 two-component sensor histidine kinase compare
BWI76_RS01200 -2.5 -2.6 diaminopimelate epimerase compare
BWI76_RS04705 -2.4 -5.7 DNA-binding transcriptional regulator FruR compare
BWI76_RS25220 -2.3 -2.0 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS08500 -2.3 -3.5 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS06530 -2.2 -3.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS02580 -2.2 -2.9 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS05200 -2.1 -3.4 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS09640 -2.0 -3.7 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS09655 -2.0 -5.0 leucine-responsive regulatory protein compare
BWI76_RS16535 -2.0 -8.1 MATE family efflux transporter conserved
BWI76_RS17980 -2.0 -2.6 RNA chaperone ProQ compare
BWI76_RS15110 -1.9 -9.7 putative excinuclease ABC subunit A compare
BWI76_RS23480 -1.9 -9.4 EAL domain-containing protein compare
BWI76_RS24850 -1.9 -7.2 DeoR family transcriptional regulator compare
BWI76_RS25320 -1.9 -5.4 glutamate synthase compare
BWI76_RS02410 -1.9 -2.4 EF-P beta-lysylation protein EpmB compare
BWI76_RS22755 -1.8 -6.6 phosphoadenosine phosphosulfate reductase compare
BWI76_RS18140 -1.8 -6.9 zinc ABC transporter permease compare
BWI76_RS02815 -1.8 -2.1 fructose-bisphosphatase class I compare
BWI76_RS09635 -1.8 -2.7 amino acid ABC transporter ATP-binding protein compare
BWI76_RS06765 -1.8 -3.1 transcriptional regulator compare
BWI76_RS13915 -1.8 -3.6 magnesium transport protein MgtC compare
BWI76_RS26620 -1.7 -1.6 Fe-S biogenesis protein NfuA compare
BWI76_RS00180 -1.7 -1.7 F0F1 ATP synthase subunit epsilon compare
BWI76_RS02735 -1.7 -3.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS00355 -1.6 -2.7 DNA polymerase I compare
BWI76_RS08580 -1.6 -4.2 quinolinate synthetase compare
BWI76_RS27430 -1.5 -1.4 (p)ppGpp synthetase compare
BWI76_RS22625 -1.5 -2.3 transcriptional regulator compare
BWI76_RS25315 -1.5 -8.6 glutamate synthase large subunit compare
BWI76_RS16360 -1.5 -2.2 electron transport complex subunit RsxB compare
BWI76_RS15850 -1.5 -0.9 DUF1317 domain-containing protein compare
BWI76_RS22840 -1.5 -2.5 transposase compare
BWI76_RS01115 -1.5 -4.0 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS01280 -1.5 -6.5 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
BWI76_RS20130 -1.4 -4.3 NADH-quinone oxidoreductase subunit N compare
BWI76_RS06770 -1.4 -8.1 Hha toxicity attenuator compare
BWI76_RS21350 -1.4 -2.5 anti-RNA polymerase sigma factor SigE compare
BWI76_RS20165 -1.4 -4.9 NADH-quinone oxidoreductase subunit G compare
BWI76_RS20140 -1.4 -5.3 NADH-quinone oxidoreductase subunit L compare
BWI76_RS27165 -1.4 -2.7 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS22240 -1.4 -5.5 transcriptional regulator compare
BWI76_RS20180 -1.4 -5.0 NADH-quinone oxidoreductase subunit C/D compare
BWI76_RS04715 -1.4 -1.6 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS23885 -1.4 -2.0 2-octaprenylphenol hydroxylase compare
BWI76_RS00380 -1.3 -4.8 oxygen-independent coproporphyrinogen III oxidase compare
BWI76_RS20160 -1.3 -2.8 NADH-quinone oxidoreductase subunit H compare
BWI76_RS18130 -1.3 -3.1 zinc ABC transporter substrate-binding protein compare
BWI76_RS15840 -1.3 -2.1 prophage protein compare
BWI76_RS13595 -1.3 -3.1 transcriptional regulator compare
BWI76_RS22650 -1.3 -3.8 lipoprotein NlpD compare
BWI76_RS15350 -1.3 -1.8 hypothetical protein compare
BWI76_RS01095 -1.3 -2.4 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS17720 -1.3 -1.1 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS20270 -1.3 -5.0 hypothetical protein compare
BWI76_RS27290 -1.3 -7.8 hypothetical protein compare
BWI76_RS08535 -1.3 -1.1 translocation protein TolB compare
BWI76_RS00390 -1.3 -4.8 two-component system sensor histidine kinase NtrB compare
BWI76_RS26075 -1.3 -3.0 DNA adenine methylase compare
BWI76_RS25060 -1.2 -2.4 lipoprotein NlpI compare
BWI76_RS21450 -1.2 -3.0 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS06780 -1.2 -5.7 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS18135 -1.2 -4.3 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS01535 -1.2 -4.5 thiazole synthase compare
BWI76_RS21070 -1.2 -1.4 outer membrane protein assembly factor BamB compare
BWI76_RS04305 -1.2 -1.2 molecular chaperone DnaJ compare
BWI76_RS26395 -1.2 -2.7 cell division protein FtsE compare
BWI76_RS08530 -1.2 -3.0 protein TolA compare
BWI76_RS17290 -1.2 -4.9 formyltetrahydrofolate deformylase compare
BWI76_RS23915 -1.1 -2.4 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS15830 -1.1 -2.1 hypothetical protein compare
BWI76_RS16965 -1.1 -2.8 murein lipoprotein compare
BWI76_RS27310 -1.1 -6.3 glycosyltransferase compare
BWI76_RS19850 -1.1 -2.6 tRNA-Pro compare
BWI76_RS25425 -1.1 -1.7 arginine repressor compare
BWI76_RS08120 -1.1 -4.1 cobalt transporter compare
BWI76_RS12090 -1.1 -2.3 HNH endonuclease compare
BWI76_RS07185 -1.1 -1.6 hypothetical protein compare
BWI76_RS00970 -1.1 -1.7 branched chain amino acid aminotransferase compare
BWI76_RS10935 -1.1 -5.4 glucan biosynthesis glucosyltransferase H compare
BWI76_RS00385 -1.1 -5.7 nitrogen assimilation regulatory protein compare
BWI76_RS21245 -1.1 -1.8 nitrogen regulatory protein P-II compare
BWI76_RS21345 -1.1 -1.2 sigma-E factor regulatory protein RseB compare
BWI76_RS21000 -1.1 -4.2 exopolyphosphatase compare
BWI76_RS20440 -1.0 -1.4 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS15435 -1.0 -1.5 hypothetical protein compare
BWI76_RS17390 -1.0 -2.3 DsrE family protein compare
BWI76_RS20135 -1.0 -4.5 NADH-quinone oxidoreductase subunit M compare
BWI76_RS22760 -1.0 -3.4 sulfite reductase subunit beta compare
BWI76_RS05135 -1.0 -2.9 iron-hydroxamate transporter substrate-binding subunit compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms