Experiment set8IT036 for Burkholderia phytofirmans PsJN

Compare to:

Phenylacetic acid 5 mM carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS16835 -7.5 -4.8 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS17680 -7.3 -3.5 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS17395 -6.7 -1.6 anthranilate synthase subunit II compare
BPHYT_RS17675 -6.5 -1.6 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS04955 -6.5 -1.6 methionyl-tRNA synthetase compare
BPHYT_RS33865 -6.2 -4.3 tryptophan synthase alpha chain compare
BPHYT_RS28705 -5.6 -1.4 IclR family transcriptional regulator compare
BPHYT_RS33840 -5.6 -9.8 amidophosphoribosyltransferase compare
BPHYT_RS14190 -5.4 -12.1 carbamoyl phosphate synthase large subunit compare
BPHYT_RS33915 -5.4 -7.1 isopropylmalate isomerase compare
BPHYT_RS04335 -5.3 -2.2 membrane protein compare
BPHYT_RS16270 -5.2 -3.5 phosphoglycerate kinase compare
BPHYT_RS17690 -5.2 -7.1 imidazole glycerol phosphate synthase compare
BPHYT_RS15915 -5.2 -9.4 ornithine carbamoyltransferase compare
BPHYT_RS30610 -5.2 -2.5 major facilitator transporter compare
BPHYT_RS17400 -5.2 -6.2 anthranilate phosphoribosyltransferase compare
BPHYT_RS33875 -5.2 -8.8 tryptophan synthase subunit alpha compare
BPHYT_RS14845 -4.9 -2.7 cysteine synthase compare
BPHYT_RS03625 -4.9 -9.4 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS13705 -4.9 -2.5 chorismate synthase compare
BPHYT_RS13470 -4.7 -1.2 arylsulfate sulfotransferase compare
BPHYT_RS18705 -4.7 -2.0 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS06685 -4.7 -2.2 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS14895 -4.7 -2.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS33835 -4.6 -5.4 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS33900 -4.6 -7.3 3-isopropylmalate dehydrogenase compare
BPHYT_RS14915 -4.6 -6.3 phosphoserine aminotransferase compare
BPHYT_RS03535 -4.5 -4.4 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS01595 -4.5 -11.1 homoserine O-acetyltransferase compare
BPHYT_RS06555 -4.5 -7.3 ketol-acid reductoisomerase compare
BPHYT_RS09515 -4.5 -3.0 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS18320 -4.4 -9.6 orotate phosphoribosyltransferase compare
BPHYT_RS06545 -4.4 -6.9 acetolactate synthase compare
BPHYT_RS01625 -4.4 -2.8 chemotaxis protein CheY compare
BPHYT_RS33645 -4.4 -5.0 homoserine kinase compare
BPHYT_RS08960 -4.4 -1.8 threonine synthase compare
BPHYT_RS17340 -4.4 -7.0 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) (from data) conserved
BPHYT_RS03640 -4.3 -2.9 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS36400 -4.3 -1.0 hypothetical protein compare
BPHYT_RS17700 -4.3 -3.3 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS08955 -4.3 -5.2 homoserine dehydrogenase compare
BPHYT_RS15920 -4.2 -8.8 argininosuccinate synthase compare
BPHYT_RS04725 -4.2 -6.2 sulfite reductase compare
BPHYT_RS34295 -4.2 -1.0 fimbrial protein compare
BPHYT_RS17390 -4.1 -10.7 anthranilate synthase subunit I compare
BPHYT_RS10065 -4.1 -1.7 cytochrome C oxidase subunit I compare
BPHYT_RS16255 -4.1 -2.8 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS33990 -4.0 -1.0 ATPase compare
BPHYT_RS17890 -4.0 -1.7 shikimate kinase compare
BPHYT_RS16840 -4.0 -2.7 transketolase compare
BPHYT_RS04740 -4.0 -6.6 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS06900 -4.0 -5.7 aspartate aminotransferase compare
BPHYT_RS16905 -4.0 -7.3 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS06610 -3.9 -1.3 triosephosphate isomerase compare
BPHYT_RS17885 -3.9 -5.0 3-dehydroquinate synthase compare
BPHYT_RS17715 -3.9 -5.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS03280 -3.8 -1.3 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS04720 -3.8 -6.2 transcriptional regulator compare
BPHYT_RS17855 -3.8 -13.9 glutamate synthase compare
BPHYT_RS35230 -3.8 -1.3 type 11 methyltransferase compare
BPHYT_RS18340 -3.8 -1.8 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS13080 -3.8 -1.3 hypothetical protein compare
BPHYT_RS18265 -3.8 -3.4 phenylacetate-CoA oxygenase subunit PaaJ compare
BPHYT_RS12530 -3.7 -4.0 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS30795 -3.7 -1.2 short-chain dehydrogenase compare
BPHYT_RS32860 -3.7 -0.9 hypothetical protein compare
BPHYT_RS15075 -3.7 -1.5 dihydrokaempferol 4-reductase compare
BPHYT_RS03150 -3.7 -13.7 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS36385 -3.7 -0.9 TetR family transcriptional regulator compare
BPHYT_RS01590 -3.6 -4.1 methionine biosynthesis protein MetW compare
BPHYT_RS28000 -3.6 -1.2 permease compare
BPHYT_RS21495 -3.6 -0.9 ABC transporter compare
BPHYT_RS04730 -3.6 -3.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS04965 -3.5 -6.4 ATP-binding protein compare
BPHYT_RS16345 -3.5 -3.6 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS16340 -3.5 -5.1 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS17670 -3.5 -2.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS32470 -3.5 -2.1 membrane protein compare
BPHYT_RS12845 -3.5 -11.6 ATPase compare
BPHYT_RS01455 -3.4 -0.8 peptide deformylase compare
BPHYT_RS27920 -3.4 -1.1 tricarballylate utilization protein B compare
BPHYT_RS06405 -3.3 -4.7 phosphoribosylamine--glycine ligase compare
BPHYT_RS14505 -3.3 -2.5 membrane protein compare
BPHYT_RS12055 -3.3 -10.8 phosphoenolpyruvate synthase compare
BPHYT_RS15670 -3.2 -4.8 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS17345 -3.1 -5.5 bifunctional thiolase PaaJ: 3-oxo-5,6-didehydrosuberyl-CoA thiolase (EC 2.3.1.223); 3-oxoadipyl-CoA thiolase (EC 2.3.1.174) (from data) conserved
BPHYT_RS20070 -3.1 -3.8 hypothetical protein compare
BPHYT_RS13200 -3.1 -1.0 molybdopterin binding oxidoreductase compare
BPHYT_RS14195 -3.1 -2.5 carbamoyl phosphate synthase small subunit compare
BPHYT_RS21130 -3.0 -2.0 F420-dependent oxidoreductase compare
BPHYT_RS25020 -3.0 -1.6 phospholipid-binding protein compare
BPHYT_RS33880 -3.0 -4.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS16245 -3.0 -2.8 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS33150 -2.9 -0.7 beta-lactamase compare
BPHYT_RS17360 -2.9 -8.6 phenylacetate-CoA ligase conserved
BPHYT_RS03480 -2.9 -4.6 ferritin compare
BPHYT_RS29365 -2.9 -1.2 ATP-NAD kinase compare
BPHYT_RS03645 -2.9 -1.9 tRNA dimethylallyltransferase compare
BPHYT_RS10100 -2.9 -3.9 dihydroxy-acid dehydratase compare
BPHYT_RS17685 -2.9 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS08565 -2.8 -0.9 dihydroorotate dehydrogenase compare
BPHYT_RS02590 -2.8 -5.4 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS13220 -2.8 -4.7 phosphomethylpyrimidine synthase compare
BPHYT_RS25335 -2.8 -0.9 hypothetical protein compare
BPHYT_RS17095 -2.8 -2.3 proline--tRNA ligase compare
BPHYT_RS17355 -2.7 -5.5 phenylacetic acid degradation protein conserved
BPHYT_RS04745 -2.7 -4.9 sulfate adenylyltransferase compare
BPHYT_RS17380 -2.7 -5.9 ribulose-phosphate 3-epimerase compare
BPHYT_RS09500 -2.7 -5.1 glucose-6-phosphate isomerase compare
BPHYT_RS25575 -2.6 -1.1 alpha/beta hydrolase compare
BPHYT_RS35770 -2.6 -0.9 glyoxalase compare
BPHYT_RS15710 -2.6 -1.0 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS24590 -2.6 -1.2 DeoR faimly transcriptional regulator compare
BPHYT_RS15620 -2.6 -2.5 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS17035 -2.6 -3.4 sugar kinase compare
BPHYT_RS16675 -2.6 -1.4 dihydroorotase compare
BPHYT_RS33765 -2.4 -0.8 membrane protein compare
BPHYT_RS07705 -2.4 -1.6 arginine succinyltransferase compare
BPHYT_RS04255 -2.4 -2.2 diadenosine tetraphosphatase compare
BPHYT_RS00920 -2.4 -1.9 transposase compare
BPHYT_RS02905 -2.4 -11.4 RNA polymerase subunit sigma-54 compare
BPHYT_RS21470 -2.3 -1.9 6-hydroxynicotinate reductase compare
BPHYT_RS17335 -2.3 -5.1 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) (from data) conserved
BPHYT_RS09155 -2.2 -3.7 3-ketoacyl-ACP reductase compare
BPHYT_RS36220 -2.2 -0.5 hypothetical protein compare
BPHYT_RS17050 -2.2 -1.4 hypothetical protein compare
BPHYT_RS10040 -2.2 -1.3 hypothetical protein compare
BPHYT_RS12615 -2.2 -1.4 dihydrodipicolinate synthase compare
BPHYT_RS25780 -2.1 -1.0 DeoR faimly transcriptional regulator compare
BPHYT_RS24550 -2.1 -2.8 hypothetical protein compare
BPHYT_RS09585 -2.1 -1.2 hypothetical protein compare
BPHYT_RS08235 -2.1 -0.8 nucleoprotein, Hfg, host factor I compare
BPHYT_RS13160 -2.1 -1.4 membrane protein compare
BPHYT_RS08125 -2.1 -5.3 ATPase compare
BPHYT_RS33125 -2.1 -1.7 hypothetical protein compare
BPHYT_RS13545 -2.0 -3.5 3-hydroxyadipyl-CoA dehydrogenase (EC 1.1.1.35) (from data) compare
BPHYT_RS23940 -2.0 -1.3 GntR family transcriptional regulator compare
BPHYT_RS17405 -2.0 -1.1 indole-3-glycerol phosphate synthase compare
BPHYT_RS21700 -2.0 -1.5 phosphotransacetylase compare
BPHYT_RS10240 -2.0 -0.8 translation initiation inhibitor compare
BPHYT_RS21765 -2.0 -1.6 IclR family transcriptional regulator compare
BPHYT_RS31050 -2.0 -1.0 epimerase compare
BPHYT_RS22940 -2.0 -1.3 pilus assembly protein TadE compare
BPHYT_RS28715 -1.9 -1.3 cupin compare
BPHYT_RS18270 -1.9 -5.2 phenylacetic acid degradation protein compare
BPHYT_RS22055 -1.9 -1.7 DNA-binding protein compare
BPHYT_RS26355 -1.9 -1.1 hypothetical protein compare
BPHYT_RS27330 -1.9 -1.1 hypothetical protein compare
BPHYT_RS03725 -1.9 -0.8 serine hydroxymethyltransferase compare
BPHYT_RS03375 -1.9 -1.3 NAD(P) transhydrogenase compare
BPHYT_RS14095 -1.9 -2.2 phosphohistidine phosphatase compare
BPHYT_RS33965 -1.8 -1.7 methylcitrate synthase compare
BPHYT_RS04920 -1.8 -2.2 aspartate 1-decarboxylase compare
BPHYT_RS12940 -1.8 -6.7 signal transduction histidine kinase compare
BPHYT_RS03570 -1.8 -4.1 heat-inducible transcription repressor HrcA compare
BPHYT_RS36525 -1.8 -3.0 hypothetical protein compare
BPHYT_RS30085 -1.8 -1.4 hypothetical protein compare
BPHYT_RS09815 -1.8 -2.6 malate synthase compare
BPHYT_RS29100 -1.8 -1.4 ketosteroid isomerase compare
BPHYT_RS31840 -1.8 -2.0 anhydrase compare
BPHYT_RS09205 -1.8 -1.8 cytochrome P450 compare
BPHYT_RS09315 -1.7 -0.9 chemotaxis protein CheY compare
BPHYT_RS16250 -1.7 -1.0 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS33370 -1.7 -1.1 LysR family transcriptional regulator compare
BPHYT_RS06760 -1.7 -4.4 3-hydroxyacyl-CoA dehydrogenase compare
BPHYT_RS18250 -1.7 -4.9 phenylacetate-CoA oxygenase subunit PaaA compare
BPHYT_RS28575 -1.7 -0.9 transcriptional regulator compare
BPHYT_RS18260 -1.7 -3.4 phenylacetic acid degradation protein compare
BPHYT_RS30395 -1.7 -1.9 small mechanosensitive ion channel protein MscS compare
BPHYT_RS06410 -1.7 -1.2 transcriptional regulator compare
BPHYT_RS18835 -1.7 -1.5 flagellar biosynthesis protein FliR compare
BPHYT_RS34400 -1.7 -1.9 hypothetical protein compare
BPHYT_RS32155 -1.7 -3.4 type IV secretion system protein VirB11 compare
BPHYT_RS05515 -1.7 -1.9 hypothetical protein compare
BPHYT_RS31125 -1.7 -2.3 hypothetical protein compare
BPHYT_RS07595 -1.7 -1.2 membrane protein compare
BPHYT_RS17735 -1.7 -2.7 ABC transporter ATP-binding protein compare
BPHYT_RS27155 -1.6 -1.2 peroxiredoxin compare
BPHYT_RS12150 -1.6 -8.2 PII uridylyl-transferase compare
BPHYT_RS08950 -1.6 -4.4 aminotransferase compare
BPHYT_RS18785 -1.6 -1.3 flagellar assembly protein FliH compare
BPHYT_RS08850 -1.6 -1.5 transcriptional regulator compare
BPHYT_RS11635 -1.6 -0.7 RNA polymerase subunit sigma-24 compare
BPHYT_RS14920 -1.6 -1.1 hypothetical protein compare
BPHYT_RS07570 -1.6 -0.9 hypothetical protein compare
BPHYT_RS13395 -1.6 -1.2 endoribonuclease L-PSP compare
BPHYT_RS28830 -1.6 -0.9 LysR family transcriptional regulator compare
BPHYT_RS21625 -1.6 -0.8 LysR family transcriptional regulator compare
BPHYT_RS12815 -1.6 -4.0 IclR family transcriptional regulator compare
BPHYT_RS07060 -1.6 -2.3 aldo/keto reductase compare
BPHYT_RS05705 -1.6 -0.9 hypothetical protein compare
BPHYT_RS31260 -1.5 -1.2 histidine kinase compare
BPHYT_RS03215 -1.5 -1.5 TetR family transcriptional regulator compare
BPHYT_RS04820 -1.5 -3.2 LysR family transcriptional regulator compare
BPHYT_RS12985 -1.5 -0.7 amino acid acetyltransferase compare
BPHYT_RS20505 -1.5 -1.2 carboxymethylenebutenolidase compare
BPHYT_RS21675 -1.5 -2.5 FAD-dependent oxidoreductase compare
BPHYT_RS06600 -1.5 -1.3 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS28190 -1.5 -1.7 porin compare
BPHYT_RS06045 -1.5 -3.8 transaldolase compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Phenylacetic acid in Burkholderia phytofirmans PsJN

For carbon source Phenylacetic acid across organisms