Experiment set8IT035 for Pseudomonas fluorescens FW300-N2E2

Compare to:

D-Trehalose dihydrate carbon source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4047 -4.8 -5.7 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_3842 -4.0 -5.3 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_71 -3.9 -4.8 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_4826 -3.8 -6.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_4057 -3.7 -1.4 lipoprotein, putative compare
Pf6N2E2_66 -3.5 -11.2 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_5175 -3.3 -12.5 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_1705 -3.3 -2.1 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_5156 -3.2 -3.1 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3248 -3.2 -3.8 Probable transmembrane protein compare
Pf6N2E2_4048 -3.2 -7.9 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3763 -3.1 -3.2 hypothetical protein compare
Pf6N2E2_3027 -3.1 -1.6 Baseplate assembly protein V compare
Pf6N2E2_3751 -3.1 -10.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3752 -3.0 -15.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4825 -3.0 -6.7 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_5176 -2.9 -8.9 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_5177 -2.9 -10.1 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3839 -2.9 -4.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3782 -2.8 -4.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_6090 -2.7 -3.2 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_5316 -2.6 -2.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3252 -2.6 -7.6 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_63 -2.6 -3.8 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_77 -2.6 -4.7 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_4579 -2.5 -2.2 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_3841 -2.5 -5.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3984 -2.5 -10.6 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_2756 -2.5 -7.8 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_2480 -2.4 -1.4 FIG00957636: hypothetical protein compare
Pf6N2E2_64 -2.3 -2.4 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_4597 -2.3 -7.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4596 -2.3 -6.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_2753 -2.3 -3.6 HtrA protease/chaperone protein compare
Pf6N2E2_3630 -2.3 -7.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4009 -2.2 -8.7 GGDEF domain protein compare
Pf6N2E2_2258 -2.1 -8.2 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3610 -2.1 -3.5 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3932 -2.1 -4.0 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_4545 -2.0 -1.8 hypothetical protein compare
Pf6N2E2_5006 -2.0 -6.2 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3170 -2.0 -6.4 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_4564 -2.0 -5.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_2897 -2.0 -6.9 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_3253 -1.9 -6.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_2752 -1.9 -7.5 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_1806 -1.9 -1.7 hypothetical protein compare
Pf6N2E2_4416 -1.8 -3.0 Tyrosine recombinase XerC compare
Pf6N2E2_2549 -1.8 -1.8 hypothetical protein compare
Pf6N2E2_2869 -1.8 -1.4 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_942 -1.8 -1.7 Mll6465 protein compare
Pf6N2E2_5579 -1.7 -5.4 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_2073 -1.7 -6.5 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_5242 -1.7 -2.2 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_2706 -1.7 -3.1 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_4638 -1.7 -3.2 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_2536 -1.6 -2.0 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_1676 -1.6 -1.3 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_6100 -1.6 -2.2 tRNA-Val-TAC compare
Pf6N2E2_6045 -1.6 -1.6 hypothetical protein compare
Pf6N2E2_1136 -1.6 -1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_2218 -1.6 -3.7 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_156 -1.6 -1.5 Carbon storage regulator compare
Pf6N2E2_4993 -1.6 -2.6 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_2473 -1.5 -1.3 Major outer membrane lipoprotein I compare
Pf6N2E2_2707 -1.5 -2.8 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_5160 -1.5 -1.1 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_4415 -1.5 -1.3 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_3062 -1.5 -2.5 Membrane-associated zinc metalloprotease compare
Pf6N2E2_1385 -1.5 -1.4 FIG00956261: hypothetical protein compare
Pf6N2E2_3219 -1.5 -2.0 hypothetical protein compare
Pf6N2E2_3661 -1.5 -4.2 hypothetical protein compare
Pf6N2E2_4372 -1.5 -3.1 FIG00460773: hypothetical protein compare
Pf6N2E2_3074 -1.5 -1.5 FIG00960973: hypothetical protein compare
Pf6N2E2_658 -1.5 -6.2 sensor histidine kinase compare
Pf6N2E2_2200 -1.4 -1.0 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_5255 -1.4 -7.0 Outer membrane stress sensor protease DegS compare
Pf6N2E2_1848 -1.4 -4.0 hypothetical protein compare
Pf6N2E2_384 -1.4 -2.8 Glycine cleavage system transcriptional activator compare
Pf6N2E2_1182 -1.4 -2.9 Transcriptional regulator, LysR family compare
Pf6N2E2_3021 -1.4 -1.2 hypothetical protein compare
Pf6N2E2_2574 -1.4 -1.7 Flagellar synthesis regulator FleN compare
Pf6N2E2_5714 -1.4 -2.3 Flavoprotein WrbA compare
Pf6N2E2_4762 -1.4 -2.4 Biotin synthesis protein BioH compare
Pf6N2E2_3783 -1.3 -4.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4678 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_3201 -1.3 -2.8 Transcriptional regulator, MerR family compare
Pf6N2E2_2188 -1.3 -3.7 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf6N2E2_4747 -1.3 -1.8 Transmembrane sensor compare
Pf6N2E2_2062 -1.3 -2.4 FIG00955561: hypothetical protein compare
Pf6N2E2_4160 -1.3 -1.3 Cytochrome c5 compare
Pf6N2E2_3349 -1.3 -1.4 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_3667 -1.3 -1.3 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_3373 -1.3 -3.5 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_3300 -1.3 -2.0 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_3786 -1.3 -2.6 Twin-arginine translocation protein TatC compare
Pf6N2E2_1972 -1.2 -1.8 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_3477 -1.2 -1.5 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_178 -1.2 -1.2 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_2010 -1.2 -0.9 hypothetical protein compare
Pf6N2E2_3826 -1.2 -4.4 Nitrogen regulation protein NR(I) compare
Pf6N2E2_6085 -1.2 -1.7 Aha1 domain superfamily compare
Pf6N2E2_3257 -1.2 -2.5 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_3282 -1.2 -1.9 FIG005080: Possible exported protein compare
Pf6N2E2_5550 -1.2 -3.9 Copper resistance protein C precursor compare
Pf6N2E2_5014 -1.2 -1.1 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_2420 -1.1 -2.1 hypothetical protein compare
Pf6N2E2_288 -1.1 -1.5 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_2217 -1.1 -2.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3033 -1.1 -1.3 hypothetical protein compare
Pf6N2E2_6031 -1.1 -3.1 hypothetical protein compare
Pf6N2E2_3825 -1.1 -3.1 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_3659 -1.1 -4.2 Protein fixF compare
Pf6N2E2_5444 -1.1 -3.6 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) compare
Pf6N2E2_3060 -1.1 -2.1 Outer membrane protein H precursor compare
Pf6N2E2_4969 -1.1 -0.9 hypothetical protein compare
Pf6N2E2_623 -1.1 -1.3 FIG00954674: hypothetical protein compare
Pf6N2E2_3096 -1.1 -1.0 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_3537 -1.1 -3.9 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_1446 -1.1 -3.1 Enoyl-[acyl-carrier-protein] reductase [NADPH] (EC 1.3.1.10) compare
Pf6N2E2_504 -1.1 -1.3 DNA-binding response regulator compare
Pf6N2E2_4732 -1.0 -1.3 hypothetical protein compare
Pf6N2E2_3872 -1.0 -2.4 hypothetical protein compare
Pf6N2E2_1896 -1.0 -2.0 hypothetical protein compare
Pf6N2E2_1081 -1.0 -1.4 probable membrane protein YPO3302 compare
Pf6N2E2_3573 -1.0 -2.2 HupE-UreJ family metal transporter compare
Pf6N2E2_1401 -1.0 -4.5 FIG00955631: hypothetical protein compare
Pf6N2E2_4751 -1.0 -2.8 response regulator compare
Pf6N2E2_2277 -1.0 -1.9 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_2186 -1.0 -3.6 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf6N2E2_2890 -1.0 -4.2 Glucose ABC transport system, inner membrane component 2 compare
Pf6N2E2_1402 -1.0 -3.0 hypothetical protein compare
Pf6N2E2_2438 -1.0 -1.4 hypothetical protein compare
Pf6N2E2_833 -1.0 -2.7 Probable Co/Zn/Cd efflux system membrane fusion protein compare
Pf6N2E2_4423 -1.0 -1.7 FIG00953342: hypothetical protein compare
Pf6N2E2_5406 -1.0 -2.1 FIG00958224: hypothetical protein compare
Pf6N2E2_3942 -1.0 -4.7 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_4710 -1.0 -1.5 hypothetical protein compare
Pf6N2E2_4537 -1.0 -1.9 Type III secretion inner membrane protein (YscS,homologous to flagellar export components) compare
Pf6N2E2_3969 -1.0 -1.3 Membrane-fusion protein compare
Pf6N2E2_2045 -1.0 -2.0 Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) compare
Pf6N2E2_6164 -1.0 -0.8 tRNA-Val-TAC compare
Pf6N2E2_4963 -1.0 -1.5 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_1140 -1.0 -2.0 Polymyxin resistance protein ArnC, glycosyl transferase (EC 2.4.-.-) compare
Pf6N2E2_819 -1.0 -2.0 Response regulator compare
Pf6N2E2_2335 -1.0 -2.7 Transcriptional regulator, GntR family compare
Pf6N2E2_5277 -1.0 -3.9 FIG00953110: hypothetical protein compare
Pf6N2E2_1715 -1.0 -1.3 hypothetical protein compare
Pf6N2E2_2693 -1.0 -0.9 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_3847 -1.0 -2.4 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_5843 -1.0 -0.9 hypothetical protein compare
Pf6N2E2_5252 -0.9 -1.6 FIG00956396: hypothetical protein compare
Pf6N2E2_5727 -0.9 -3.8 FIG00955360: hypothetical protein compare
Pf6N2E2_5524 -0.9 -5.5 Outer membrane porin, OprD family compare
Pf6N2E2_1932 -0.9 -3.1 Transcriptional regulator, IclR family compare
Pf6N2E2_1441 -0.9 -1.3 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_5086 -0.9 -0.9 hypothetical protein compare
Pf6N2E2_5668 -0.9 -3.3 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_699 -0.9 -1.9 Heme d1 biosynthesis protein NirG compare
Pf6N2E2_1400 -0.9 -5.2 Sensory box histidine kinase/response regulator compare
Pf6N2E2_1015 -0.9 -2.8 Inositol transport system sugar-binding protein compare
Pf6N2E2_2309 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_3095 -0.9 -0.8 hypothetical protein compare
Pf6N2E2_4205 -0.9 -2.0 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_5705 -0.9 -1.0 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_2934 -0.9 -2.2 lipoprotein, putative compare
Pf6N2E2_350 -0.9 -1.3 Gfa-like protein compare
Pf6N2E2_2509 -0.9 -1.2 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_2124 -0.9 -1.4 Mg(2+) transport ATPase protein C compare
Pf6N2E2_2395 -0.9 -3.0 Pyoverdin biosynthesis protein PvdH, L-2,4-diaminobutyrate:2-oxoglutarate aminotransferase (EC 2.6.1.76) compare
Pf6N2E2_2022 -0.9 -3.2 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_2688 -0.9 -1.3 YD repeat protein compare
Pf6N2E2_3198 -0.9 -1.3 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_5643 -0.9 -2.6 hypothetical protein compare
Pf6N2E2_5780 -0.9 -3.7 Periplasmic protease compare
Pf6N2E2_2666 -0.9 -2.9 hypothetical protein compare
Pf6N2E2_2986 -0.9 -2.4 Transcriptional regulator, LuxR family compare
Pf6N2E2_1337 -0.9 -3.3 Cys regulon transcriptional activator CysB compare
Pf6N2E2_3264 -0.8 -1.2 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_420 -0.8 -1.0 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_5956 -0.8 -3.1 FIG004453: protein YceG like compare
Pf6N2E2_3982 -0.8 -1.5 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf6N2E2_2962 -0.8 -2.0 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_868 -0.8 -2.3 Transcriptional regulator, HxlR family compare
Pf6N2E2_4059 -0.8 -0.8 DNA-binding protein HU-alpha compare
Pf6N2E2_1893 -0.8 -1.5 hypothetical protein compare
Pf6N2E2_1463 -0.8 -1.0 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf6N2E2_1683 -0.8 -1.4 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_282 -0.8 -0.7 GNAT family acetyltransferase YjcF compare
Pf6N2E2_4562 -0.8 -1.3 L-cystine uptake protein TcyP compare
Pf6N2E2_5342 -0.8 -1.8 21 kDa hemolysin precursor compare
Pf6N2E2_1247 -0.8 -2.3 hypothetical protein compare
Pf6N2E2_2254 -0.8 -3.1 Cell filamentation protein fic compare
Pf6N2E2_497 -0.8 -2.1 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism compare
Pf6N2E2_5337 -0.8 -2.2 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_37 -0.8 -1.8 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_5419 -0.8 -2.0 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf6N2E2_5178 -0.8 -1.2 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5848 -0.8 -2.1 small component of pyruvate transporter (yjcH-like) (from data) compare
Pf6N2E2_146 -0.8 -0.9 Transcriptional regulator, MarR family compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in carbon source experiments

For carbon source D-Trehalose dihydrate across organisms