Experiment set8IT035 for Pseudomonas fluorescens FW300-N2E2

Compare to:

D-Trehalose dihydrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_4369 +1.9 5.9 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4414 +1.5 2.8 FIG00953808: hypothetical protein compare
Pf6N2E2_1032 +1.5 1.8 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_5103 +1.5 1.8 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_1412 +1.3 4.2 hypothetical protein compare
Pf6N2E2_4773 +1.3 2.0 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_127 +1.3 2.3 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_338 +1.2 2.6 Transcriptional regulator, AraC family compare
Pf6N2E2_1099 +1.2 3.1 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_4459 +1.2 1.8 Transcriptional regulator, GntR family compare
Pf6N2E2_2459 +1.2 3.7 Organic hydroperoxide resistance protein compare
Pf6N2E2_2323 +1.1 2.5 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_4548 +1.1 2.2 hypothetical protein compare
Pf6N2E2_2912 +1.1 1.0 FIG00954094: hypothetical protein compare
Pf6N2E2_3978 +1.1 8.0 Type I secretion system, membrane fusion protein LapC compare
Pf6N2E2_1389 +1.1 6.9 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) compare
Pf6N2E2_2580 +1.0 4.8 Flagellar biosynthesis protein FliP compare
Pf6N2E2_6029 +1.0 2.1 hypothetical protein compare
Pf6N2E2_4206 +1.0 1.6 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_4551 +1.0 1.5 hypothetical protein compare
Pf6N2E2_6047 +1.0 1.9 hypothetical protein compare
Pf6N2E2_2064 +1.0 2.7 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_5646 +1.0 1.8 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_3665 +1.0 1.2 serine/threonine protein kinase compare
Pf6N2E2_746 +1.0 1.6 FIG00958097: hypothetical protein compare
Pf6N2E2_2578 +0.9 1.7 Flagellar biosynthesis protein FliR compare
Pf6N2E2_342 +0.9 1.4 DNA-binding response regulator compare
Pf6N2E2_1796 +0.9 2.9 Glycine cleavage system transcriptional activator GcvA compare
Pf6N2E2_1028 +0.9 2.7 Transcriptional regulator, LysR family compare
Pf6N2E2_5505 +0.9 2.6 hypothetical protein compare
Pf6N2E2_546 +0.9 1.6 FIG00966904: hypothetical protein compare
Pf6N2E2_1040 +0.9 1.4 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_5059 +0.9 5.7 Transcriptional regulator, TetR family compare
Pf6N2E2_1396 +0.9 1.2 ABC transporter, ATP-binding protein compare
Pf6N2E2_5425 +0.9 1.5 hypothetical protein compare
Pf6N2E2_1779 +0.9 2.8 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_692 +0.9 2.3 Glucarate dehydratase (EC 4.2.1.40) compare
Pf6N2E2_5312 +0.9 2.1 FIG00964214: hypothetical protein compare
Pf6N2E2_1747 +0.9 1.9 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_2156 +0.9 2.2 Putative polyketide synthase (Fragment) compare
Pf6N2E2_3625 +0.9 5.9 Flagellar motor rotation protein MotA compare
Pf6N2E2_3713 +0.9 1.8 Acyl carrier protein compare
Pf6N2E2_1336 +0.9 1.3 AraC family transcription regulator compare
Pf6N2E2_2088 +0.9 1.8 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_2225 +0.9 2.0 FIG00953489: hypothetical protein compare
Pf6N2E2_1596 +0.9 1.1 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_1246 +0.9 1.2 FIG00961372: hypothetical protein compare
Pf6N2E2_3761 +0.9 7.3 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_1706 +0.9 2.8 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_2561 +0.8 2.4 FIG00955434: hypothetical protein compare
Pf6N2E2_1784 +0.8 1.4 Methyl-accepting chemotaxis protein compare
Pf6N2E2_5049 +0.8 1.6 acetyltransferase, GNAT family compare
Pf6N2E2_2279 +0.8 2.3 FIG00954981: hypothetical protein compare
Pf6N2E2_2755 +0.8 1.6 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_1236 +0.8 2.1 Transcriptional regulator, LysR family compare
Pf6N2E2_939 +0.8 2.1 hypothetical protein compare
Pf6N2E2_4889 +0.8 3.6 Putative transport protein compare
Pf6N2E2_672 +0.8 1.9 ABC-type polar amino acid transport system, ATPase component compare
Pf6N2E2_2825 +0.8 2.5 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_3980 +0.8 5.0 Type I secretion system, outer membrane component LapE compare
Pf6N2E2_3261 +0.8 2.4 hypothetical protein compare
Pf6N2E2_4062 +0.8 1.9 hypothetical protein compare
Pf6N2E2_4499 +0.8 1.2 protein of unknown function DUF86 compare
Pf6N2E2_923 +0.8 1.9 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_919 +0.8 1.3 FIG00954373: hypothetical protein compare
Pf6N2E2_3516 +0.8 1.2 Probable transmembrane protein compare
Pf6N2E2_3981 +0.8 6.5 T1SS secreted agglutinin RTX compare
Pf6N2E2_6052 +0.8 2.5 Hydantoin racemase (EC 5.1.99.-) compare
Pf6N2E2_664 +0.8 2.0 Acetoin catabolism protein X compare
Pf6N2E2_4803 +0.8 0.5 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_1391 +0.7 2.7 DNA-binding response regulator, LuxR family compare
Pf6N2E2_3634 +0.7 1.6 Transporter compare
Pf6N2E2_5237 +0.7 1.5 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_2312 +0.7 1.2 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_339 +0.7 2.7 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_2181 +0.7 0.9 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_2284 +0.7 1.8 Cell division inhibitor-related protein compare
Pf6N2E2_2628 +0.7 2.9 Flagellar basal-body rod protein FlgF compare
Pf6N2E2_3624 +0.7 3.1 Flagellar motor rotation protein MotB compare
Pf6N2E2_869 +0.7 2.9 FMN oxidoreductase compare
Pf6N2E2_943 +0.7 2.0 Transcriptional regulator, AraC family compare
Pf6N2E2_5128 +0.7 1.8 COG1496: Uncharacterized conserved protein compare
Pf6N2E2_3494 +0.7 2.1 Acyl dehydratase compare
Pf6N2E2_1393 +0.7 3.3 hypothetical protein compare
Pf6N2E2_1567 +0.7 2.6 FIG00964846: hypothetical protein compare
Pf6N2E2_1671 +0.7 2.6 Transcriptional regulator, TetR family compare
Pf6N2E2_6065 +0.7 1.2 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_1534 +0.7 0.6 Probable transmembrane protein compare
Pf6N2E2_963 +0.7 2.1 probable exported protein STY4558 compare
Pf6N2E2_160 +0.7 2.1 hypothetical protein compare
Pf6N2E2_924 +0.7 1.9 Transcriptional regulator XdhR, TetR family compare
Pf6N2E2_5677 +0.7 0.8 Carbon storage regulator compare
Pf6N2E2_84 +0.7 1.2 hypothetical protein compare
Pf6N2E2_3106 +0.7 1.7 hypothetical protein compare
Pf6N2E2_3014 +0.7 1.4 P2-like prophage tail protein X compare
Pf6N2E2_3737 +0.7 1.7 General secretion pathway protein M compare
Pf6N2E2_4300 +0.7 1.6 Uncharacterized protein similar to VCA0109 compare
Pf6N2E2_3979 +0.7 4.6 Type I secretion system ATPase, LssB family LapB compare
Pf6N2E2_97 +0.7 2.8 putataive branched-chain amino acid transport protein AzlC compare
Pf6N2E2_1434 +0.7 1.2 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_1178 +0.7 1.7 3-oxoacyl-(acyl-carrier-protein) synthase compare
Pf6N2E2_4071 +0.7 2.4 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_2425 +0.7 1.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2546 +0.7 1.7 Carbon storage regulator compare
Pf6N2E2_1920 +0.7 1.5 Rubredoxin compare
Pf6N2E2_1584 +0.7 1.4 Transcriptional regulator, MarR family / Acetyltransferase (GNAT) compare
Pf6N2E2_1279 +0.7 1.6 Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system compare
Pf6N2E2_2834 +0.7 2.6 Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3) compare
Pf6N2E2_4153 +0.7 1.1 Sensory box histidine kinase compare
Pf6N2E2_1695 +0.7 2.0 Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme compare
Pf6N2E2_5622 +0.7 1.9 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_74 +0.7 2.0 DedD protein compare
Pf6N2E2_1886 +0.7 1.6 hypothetical protein compare
Pf6N2E2_2712 +0.7 2.7 Permeases of the major facilitator superfamily compare
Pf6N2E2_928 +0.7 1.8 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf6N2E2_1433 +0.7 1.9 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_2519 +0.7 0.8 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_1 +0.7 3.0 Trans-aconitate 2-methyltransferase (EC 2.1.1.144) compare
Pf6N2E2_3612 +0.7 1.2 HflK protein compare
Pf6N2E2_2503 +0.6 0.5 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_4052 +0.6 1.1 FIG00955481: hypothetical protein compare
Pf6N2E2_2061 +0.6 2.1 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
Pf6N2E2_6007 +0.6 2.0 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_3533 +0.6 1.6 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf6N2E2_3029 +0.6 2.1 Holin compare
Pf6N2E2_405 +0.6 1.1 hypothetical protein compare
Pf6N2E2_1504 +0.6 1.9 putative 2-pyrone-4,6-dicarboxylic acid hydrolase compare
Pf6N2E2_5207 +0.6 1.2 hypothetical protein compare
Pf6N2E2_2013 +0.6 0.8 hypothetical protein compare
Pf6N2E2_2792 +0.6 1.7 Antitoxin 1 compare
Pf6N2E2_440 +0.6 1.7 FIG00954920: hypothetical protein compare
Pf6N2E2_3429 +0.6 1.4 hypothetical protein compare
Pf6N2E2_2788 +0.6 1.4 Transcriptional regulator, AsnC family compare
Pf6N2E2_2300 +0.6 1.9 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM compare
Pf6N2E2_1141 +0.6 1.7 Lipid-A-disaccharide synthase (EC 2.4.1.182) compare
Pf6N2E2_962 +0.6 1.4 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_659 +0.6 1.0 Transcriptional regulatory protein ompR compare
Pf6N2E2_377 +0.6 1.9 hypothetical protein compare
Pf6N2E2_5922 +0.6 3.1 Transcriptional regulator, LysR family compare
Pf6N2E2_693 +0.6 1.0 hypothetical protein compare
Pf6N2E2_1516 +0.6 1.7 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_4985 +0.6 2.7 Nucleoside-diphosphate-sugar epimerases compare
Pf6N2E2_2824 +0.6 3.7 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_3100 +0.6 1.4 FIG00953063: hypothetical protein compare
Pf6N2E2_1960 +0.6 2.1 ABC transporter for D-sorbitol, ATPase component (from data) compare
Pf6N2E2_3461 +0.6 0.6 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5589 +0.6 2.6 Sodium-type flagellar protein motY precursor compare
Pf6N2E2_5073 +0.6 1.3 Large-conductance mechanosensitive channel compare
Pf6N2E2_1500 +0.6 2.2 LysR family transcriptional regulator lrhA compare
Pf6N2E2_6057 +0.6 1.5 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_361 +0.6 1.6 Peptide ABC transporter, permease protein compare
Pf6N2E2_2394 +0.6 2.1 FIG006220: Hypothetical MbtH-like protein compare
Pf6N2E2_1085 +0.6 2.0 Fe2+/Zn2+ uptake regulation proteins compare
Pf6N2E2_2054 +0.6 2.1 hypothetical protein compare
Pf6N2E2_4534 +0.6 1.2 hypothetical protein compare
Pf6N2E2_2247 +0.6 1.0 Transcriptional regulator, AraC family compare
Pf6N2E2_3539 +0.6 1.8 FIG00955840: hypothetical protein compare
Pf6N2E2_4624 +0.6 0.6 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_5236 +0.6 1.2 hypothetical protein compare
Pf6N2E2_3725 +0.6 0.6 FIG085779: Lipoprotein compare
Pf6N2E2_748 +0.6 1.7 Plant-induced nitrilase (EC 3.5.5.1), hydrolyses beta-cyano-L-alanine compare
Pf6N2E2_491 +0.6 2.1 hypothetical protein compare
Pf6N2E2_4263 +0.6 1.3 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf6N2E2_3161 +0.6 1.3 hypothetical protein compare
Pf6N2E2_2278 +0.6 4.3 Transcription-repair coupling factor compare
Pf6N2E2_700 +0.6 1.7 Heme d1 biosynthesis protein NirL compare
Pf6N2E2_870 +0.6 1.8 DNA-binding response regulator compare
Pf6N2E2_1435 +0.6 1.1 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_3007 +0.6 2.7 Phage tail length tape-measure protein compare
Pf6N2E2_5965 +0.5 1.4 transcriptional regulator compare
Pf6N2E2_1011 +0.5 1.9 hypothetical protein compare
Pf6N2E2_2592 +0.5 2.4 Flagellar motor switch protein FliG compare
Pf6N2E2_2201 +0.5 1.5 Transmembrane regulator protein PrtR compare
Pf6N2E2_88 +0.5 0.6 hypothetical protein compare
Pf6N2E2_4084 +0.5 2.6 Transcriptional regulator compare
Pf6N2E2_2919 +0.5 0.7 FIG00955830: hypothetical protein compare
Pf6N2E2_592 +0.5 2.2 Transcriptional regulators, LysR family compare
Pf6N2E2_5169 +0.5 1.7 FIG00954216: hypothetical protein compare
Pf6N2E2_1083 +0.5 0.6 hypothetical protein compare
Pf6N2E2_1749 +0.5 0.8 Cyn operon transcriptional activator compare
Pf6N2E2_2387 +0.5 1.2 Ribonuclease E inhibitor RraA compare
Pf6N2E2_2674 +0.5 0.7 FIG00953856: hypothetical protein compare
Pf6N2E2_5155 +0.5 0.9 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_1626 +0.5 2.2 Putative ATP-binding component of a transport system compare
Pf6N2E2_1532 +0.5 2.9 FIG003847: Oxidoreductase (flavoprotein) compare
Pf6N2E2_667 +0.5 2.0 Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex (EC 2.3.1.-) compare
Pf6N2E2_3830 +0.5 1.9 Glutaredoxin 3 (Grx3) compare
Pf6N2E2_5756 +0.5 1.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3696 +0.5 0.6 hypothetical protein compare
Pf6N2E2_2180 +0.5 1.2 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_812 +0.5 2.1 Glycosyltransferase compare
Pf6N2E2_2112 +0.5 2.2 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit B (from data) compare
Pf6N2E2_1438 +0.5 1.5 Methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_4150 +0.5 1.8 probable exported protein YPO0432 compare
Pf6N2E2_4990 +0.5 0.8 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf6N2E2_3947 +0.5 0.9 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_3200 +0.5 2.0 Putative membrane protein compare
Pf6N2E2_3037 +0.5 3.4 RNA polymerase sigma factor RpoS compare
Pf6N2E2_5111 +0.5 0.8 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_1863 +0.5 2.5 putative dioxygenase hydroxylase component compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in carbon source experiments

For carbon source D-Trehalose dihydrate across organisms