Experiment set8IT035 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM

200 most important genes:

  gene name fitness t score description  
BWI76_RS18950 -6.7 -5.6 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS21070 -6.4 -4.1 outer membrane protein assembly factor BamB compare
BWI76_RS18920 -6.2 -5.5 ATP phosphoribosyltransferase compare
BWI76_RS18955 -6.2 -4.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS00805 -6.0 -4.2 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS26570 -6.0 -4.1 anion permease compare
BWI76_RS01615 -6.0 -12.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS13920 -5.8 -8.8 magnesium-translocating P-type ATPase compare
BWI76_RS04510 -5.8 -3.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS26665 -5.5 -5.2 DNA-binding response regulator compare
BWI76_RS02530 -5.5 -3.8 tRNA dimethylallyltransferase compare
BWI76_RS19840 -5.4 -2.1 hypothetical protein compare
BWI76_RS00965 -5.3 -2.1 acetolactate synthase 2 small subunit compare
BWI76_RS00855 -5.3 -10.8 argininosuccinate lyase compare
BWI76_RS04685 -5.3 -10.5 putative leucine operon leader peptide compare
BWI76_RS05835 -5.1 -4.3 gamma-glutamyl-phosphate reductase compare
BWI76_RS07070 -5.1 -5.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS05840 -5.0 -4.4 glutamate 5-kinase compare
BWI76_RS04255 -5.0 -9.5 threonine synthase compare
BWI76_RS01330 -5.0 -5.9 twin-arginine translocase subunit TatC compare
BWI76_RS11840 -4.9 -6.4 tryptophan synthase subunit alpha compare
BWI76_RS04645 -4.9 -5.5 3-dehydroquinase compare
BWI76_RS09645 -4.8 -2.6 thioredoxin-disulfide reductase compare
BWI76_RS20895 -4.8 -6.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS04675 -4.8 -5.8 3-isopropylmalate dehydrogenase compare
BWI76_RS06525 -4.8 -6.5 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS00345 -4.8 -4.7 protein disulfide oxidoreductase DsbA compare
BWI76_RS19845 -4.8 -8.7 phosphatase compare
BWI76_RS23920 -4.8 -6.0 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS24400 -4.7 -8.9 outer membrane channel protein TolC compare
BWI76_RS11845 -4.6 -3.6 tryptophan synthase subunit beta compare
BWI76_RS25230 -4.6 -6.4 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS04670 -4.6 -8.3 3-isopropylmalate dehydratase large subunit compare
BWI76_RS00850 -4.5 -9.8 acetylglutamate kinase compare
BWI76_RS11965 -4.5 -5.5 orotidine-5'-phosphate decarboxylase compare
BWI76_RS08385 -4.5 -5.3 citrate (Si)-synthase compare
BWI76_RS04250 -4.5 -8.7 homoserine kinase compare
BWI76_RS26085 -4.5 -3.4 3-dehydroquinate synthase compare
BWI76_RS00400 -4.5 -2.9 glutamine synthetase compare
BWI76_RS25115 -4.3 -7.9 argininosuccinate synthase compare
BWI76_RS20355 -4.3 -4.0 colicin V production protein compare
BWI76_RS04160 -4.3 -10.2 phosphoserine phosphatase compare
BWI76_RS04470 -4.2 -10.4 carbamoyl phosphate synthase large subunit compare
BWI76_RS04465 -4.2 -4.8 carbamoyl-phosphate synthase small subunit compare
BWI76_RS04665 -4.1 -16.2 3-isopropylmalate dehydratase small subunit compare
BWI76_RS09755 -4.1 -8.6 phosphoserine transaminase compare
BWI76_RS18940 -4.1 -3.9 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS21475 -4.1 -6.6 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS20435 -4.1 -2.2 chorismate synthase compare
BWI76_RS25215 -4.1 -5.1 phospholipid-binding protein MlaC compare
BWI76_RS18935 -4.1 -5.5 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS18140 -4.0 -3.2 zinc ABC transporter permease compare
BWI76_RS25225 -4.0 -5.2 ABC transporter permease compare
BWI76_RS00785 -4.0 -8.9 cystathionine gamma-synthase compare
BWI76_RS00845 -4.0 -8.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS00975 -3.9 -7.7 dihydroxy-acid dehydratase compare
BWI76_RS04240 -3.9 -3.4 thr operon leader peptide compare
BWI76_RS03010 -3.9 -7.2 ornithine carbamoyltransferase compare
BWI76_RS20650 -3.9 -2.7 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS20350 -3.9 -9.4 amidophosphoribosyltransferase compare
BWI76_RS01655 -3.8 -7.0 homoserine O-succinyltransferase compare
BWI76_RS04245 -3.8 -13.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS00990 -3.8 -11.7 ketol-acid reductoisomerase compare
BWI76_RS21265 -3.8 -9.6 phosphoribosylformylglycinamidine synthase compare
BWI76_RS15115 -3.8 -7.2 MFS transporter compare
BWI76_RS10990 -3.7 -4.5 dihydroorotase compare
BWI76_RS00980 -3.7 -10.3 PLP-dependent threonine dehydratase compare
BWI76_RS07065 -3.7 -7.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS20965 -3.7 -4.7 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS01210 -3.6 -2.5 tyrosine recombinase XerC compare
BWI76_RS23365 -3.6 -5.5 LysR family transcriptional regulator compare
BWI76_RS11860 -3.6 -9.4 anthranilate synthase component I compare
BWI76_RS04680 -3.6 -11.2 2-isopropylmalate synthase compare
BWI76_RS21465 -3.5 -3.8 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS23220 -3.5 -6.9 amino-acid N-acetyltransferase compare
BWI76_RS24285 -3.5 -7.0 cystathionine beta-lyase compare
BWI76_RS11850 -3.5 -12.9 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS18925 -3.4 -6.8 histidinol dehydrogenase compare
BWI76_RS20475 -3.4 -2.6 phospholipid-binding lipoprotein MlaA compare
BWI76_RS00960 -3.4 -6.3 acetolactate synthase 2 catalytic subunit compare
BWI76_RS23360 -3.3 -4.5 diaminopimelate decarboxylase compare
BWI76_RS01610 -3.3 -4.9 phosphoribosylamine--glycine ligase compare
BWI76_RS26670 -3.3 -9.3 two-component sensor histidine kinase compare
BWI76_RS01800 -3.3 -4.8 glucose-6-phosphate isomerase compare
BWI76_RS04530 -3.2 -2.8 peptidylprolyl isomerase SurA compare
BWI76_RS06530 -3.2 -8.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS02995 -3.2 -7.4 aspartate carbamoyltransferase compare
BWI76_RS25220 -3.1 -3.8 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS23240 -3.1 -3.7 exonuclease V subunit gamma compare
BWI76_RS09910 -3.1 -13.2 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS18930 -3.1 -6.1 histidinol-phosphate transaminase compare
BWI76_RS23265 -3.1 -4.0 hypothetical protein compare
BWI76_RS23230 -3.0 -3.0 exodeoxyribonuclease V subunit beta compare
BWI76_RS11855 -3.0 -8.2 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS23480 -2.9 -10.9 EAL domain-containing protein compare
BWI76_RS25645 -2.8 -6.4 shikimate dehydrogenase compare
BWI76_RS01325 -2.8 -2.6 twin-arginine translocase subunit TatB compare
BWI76_RS00835 -2.8 -12.4 phosphoenolpyruvate carboxylase compare
BWI76_RS00180 -2.8 -1.7 F0F1 ATP synthase subunit epsilon compare
BWI76_RS05015 -2.8 -3.3 transcriptional regulator compare
BWI76_RS06465 -2.7 -3.0 IclR family transcriptional regulator compare
BWI76_RS18135 -2.7 -4.8 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS24850 -2.6 -6.3 DeoR family transcriptional regulator compare
BWI76_RS26000 -2.6 -5.5 aspartate aminotransferase family protein compare
BWI76_RS23885 -2.6 -2.3 2-octaprenylphenol hydroxylase compare
BWI76_RS01275 -2.4 -7.0 LysR family transcriptional regulator compare
BWI76_RS27390 -2.4 -5.3 ribonuclease PH compare
BWI76_RS26940 -2.3 -5.5 transcriptional regulator compare
BWI76_RS00970 -2.3 -3.0 branched chain amino acid aminotransferase compare
BWI76_RS27385 -2.3 -5.7 orotate phosphoribosyltransferase compare
BWI76_RS15225 -2.3 -1.8 DeoR family transcriptional regulator compare
BWI76_RS00720 -2.3 -3.3 DNA-binding response regulator compare
BWI76_RS27165 -2.2 -4.1 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS25060 -2.2 -3.6 lipoprotein NlpI compare
BWI76_RS08495 -2.2 -4.6 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS06780 -2.2 -5.9 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS09760 -2.2 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS04705 -2.2 -4.4 DNA-binding transcriptional regulator FruR compare
BWI76_RS18130 -2.1 -4.8 zinc ABC transporter substrate-binding protein compare
BWI76_RS17975 -2.1 -3.8 tail-specific protease compare
BWI76_RS15955 -2.1 -4.0 transcriptional regulator compare
BWI76_RS18165 -2.1 -1.7 NUDIX pyrophosphatase compare
BWI76_RS05260 -2.1 -2.1 chaperone compare
BWI76_RS09635 -2.1 -2.3 amino acid ABC transporter ATP-binding protein compare
BWI76_RS13915 -2.1 -4.9 magnesium transport protein MgtC compare
BWI76_RS00875 -2.1 -5.6 DNA-binding transcriptional regulator FabR compare
BWI76_RS01350 -2.0 -1.6 NAD(P)H-flavin reductase compare
BWI76_RS08500 -2.0 -2.9 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS06765 -2.0 -3.6 transcriptional regulator compare
BWI76_RS22625 -2.0 -2.4 transcriptional regulator compare
BWI76_RS09640 -2.0 -3.6 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS00985 -1.9 -5.2 transcriptional regulator IlvY compare
BWI76_RS19805 -1.9 -3.7 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS04305 -1.9 -1.4 molecular chaperone DnaJ compare
BWI76_RS20160 -1.9 -2.2 NADH-quinone oxidoreductase subunit H compare
BWI76_RS19905 -1.8 -3.6 OmpK36 porin compare
BWI76_RS27430 -1.8 -1.5 (p)ppGpp synthetase compare
BWI76_RS01185 -1.8 -2.6 adenylate cyclase compare
BWI76_RS13820 -1.8 -1.9 hypothetical protein compare
BWI76_RS25600 -1.8 -1.3 tRNA-Thr compare
BWI76_RS02815 -1.8 -2.2 fructose-bisphosphatase class I compare
BWI76_RS05450 -1.7 -2.2 ribonuclease HI compare
BWI76_RS09660 -1.7 -1.4 DNA translocase FtsK compare
BWI76_RS21310 -1.7 -1.3 DNA repair protein RecO compare
BWI76_RS21350 -1.7 -4.1 anti-RNA polymerase sigma factor SigE compare
BWI76_RS06770 -1.7 -7.4 Hha toxicity attenuator compare
BWI76_RS16980 -1.6 -5.5 bifunctional cysteine desulfurase/selenocysteine lyase compare
BWI76_RS26175 -1.6 -4.7 DeoR/GlpR family transcriptional regulator compare
BWI76_RS07475 -1.6 -1.4 DNA-binding transcriptional regulator RamA compare
BWI76_RS22645 -1.6 -4.3 RNA polymerase sigma factor RpoS compare
BWI76_RS20270 -1.6 -4.4 hypothetical protein compare
BWI76_RS20165 -1.6 -5.1 NADH-quinone oxidoreductase subunit G compare
BWI76_RS27310 -1.5 -8.1 glycosyltransferase compare
BWI76_RS16990 -1.5 -3.7 ABC transporter ATP-binding protein compare
BWI76_RS22240 -1.5 -5.0 transcriptional regulator compare
BWI76_RS01135 -1.5 -3.7 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS06775 -1.5 -7.7 multidrug efflux RND transporter permease subunit compare
BWI76_RS20130 -1.5 -5.1 NADH-quinone oxidoreductase subunit N compare
BWI76_RS20170 -1.5 -5.6 NADH-quinone oxidoreductase subunit F compare
BWI76_RS15110 -1.4 -8.2 putative excinuclease ABC subunit A compare
BWI76_RS05200 -1.4 -1.8 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS01115 -1.4 -3.4 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS08530 -1.4 -3.0 protein TolA compare
BWI76_RS01200 -1.4 -1.3 diaminopimelate epimerase compare
BWI76_RS03045 -1.4 -1.4 hypothetical protein compare
BWI76_RS25960 -1.4 -4.4 NUDIX hydrolase compare
BWI76_RS08525 -1.4 -2.2 colicin transporter compare
BWI76_RS04525 -1.4 -1.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS16975 -1.3 -5.1 cysteine desufuration protein SufE compare
BWI76_RS17300 -1.3 -1.6 tRNA-Tyr compare
BWI76_RS13595 -1.3 -3.1 transcriptional regulator compare
BWI76_RS16535 -1.3 -6.9 MATE family efflux transporter conserved
BWI76_RS25300 -1.3 -1.9 hybrid sensor histidine kinase/response regulator compare
BWI76_RS01090 -1.3 -5.8 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS01125 -1.3 -4.0 4-alpha-L-fucosyltransferase compare
BWI76_RS04955 -1.3 -2.1 hypoxanthine phosphoribosyltransferase compare
BWI76_RS01110 -1.3 -2.2 TDP-fucosamine acetyltransferase compare
BWI76_RS20140 -1.3 -4.7 NADH-quinone oxidoreductase subunit L compare
BWI76_RS22470 -1.3 -2.2 transporter permease compare
BWI76_RS17720 -1.3 -1.0 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS18385 -1.3 -1.3 hypothetical protein compare
BWI76_RS16995 -1.2 -6.5 Fe-S cluster assembly protein SufB compare
BWI76_RS17000 -1.2 -6.1 Fe-S cluster assembly scaffold SufA compare
BWI76_RS21000 -1.2 -3.9 exopolyphosphatase compare
BWI76_RS26620 -1.2 -1.2 Fe-S biogenesis protein NfuA compare
BWI76_RS15850 -1.2 -0.7 DUF1317 domain-containing protein compare
BWI76_RS23895 -1.2 -1.5 Xaa-Pro aminopeptidase compare
BWI76_RS20180 -1.2 -4.9 NADH-quinone oxidoreductase subunit C/D compare
BWI76_RS16470 -1.2 -1.5 transcriptional repressor NemR compare
BWI76_RS15840 -1.2 -2.0 prophage protein compare
BWI76_RS20440 -1.2 -1.7 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS04100 -1.2 -4.4 peptide chain release factor 3 compare
BWI76_RS09255 -1.2 -2.1 hypothetical protein compare
BWI76_RS27680 -1.1 -2.8 TetR family transcriptional regulator compare
BWI76_RS22950 -1.1 -2.4 membrane protein compare
BWI76_RS27440 -1.1 -1.7 DNA helicase RecG compare
BWI76_RS01935 -1.1 -1.8 thiamin phosphate synthase compare
BWI76_RS24025 -1.1 -5.0 agmatinase compare
BWI76_RS05465 -1.1 -1.4 amidohydrolase compare
BWI76_RS17190 -1.1 -1.7 TonB system transport protein TonB compare


Specific Phenotypes

For 4 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms