Experiment set8IT034 for Pseudomonas fluorescens FW300-N2E2

Compare to:

4-Hydroxybenzoic Acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_3978 +2.3 19.5 Type I secretion system, membrane fusion protein LapC compare
Pf6N2E2_3979 +2.3 18.0 Type I secretion system ATPase, LssB family LapB compare
Pf6N2E2_3981 +2.2 20.0 T1SS secreted agglutinin RTX compare
Pf6N2E2_3980 +1.8 11.5 Type I secretion system, outer membrane component LapE compare
Pf6N2E2_2755 +1.6 1.7 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_3625 +1.5 10.8 Flagellar motor rotation protein MotA compare
Pf6N2E2_3624 +1.3 8.2 Flagellar motor rotation protein MotB compare
Pf6N2E2_2597 +1.3 10.2 Flagellar regulatory protein FleQ compare
Pf6N2E2_4181 +1.3 1.8 Organic hydroperoxide resistance protein compare
Pf6N2E2_6057 +1.3 4.3 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_1596 +1.3 2.1 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_5697 +1.3 10.0 Flagellar hook protein FlgE compare
Pf6N2E2_2627 +1.2 6.0 Flagellar basal-body rod protein FlgG compare
Pf6N2E2_1774 +1.2 1.2 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_2578 +1.2 4.0 Flagellar biosynthesis protein FliR compare
Pf6N2E2_2509 +1.2 2.9 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_5694 +1.2 5.4 Flagellar basal-body rod protein FlgB compare
Pf6N2E2_987 +1.2 2.9 hypothetical protein compare
Pf6N2E2_4369 +1.2 3.1 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_6029 +1.1 2.8 hypothetical protein compare
Pf6N2E2_2583 +1.1 6.5 Flagellar motor switch protein FliM compare
Pf6N2E2_2579 +1.1 5.2 Flagellar biosynthesis protein FliQ compare
Pf6N2E2_1758 +1.1 2.4 Transcriptional regulator, MarR family compare
Pf6N2E2_4204 +1.1 2.0 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_2582 +1.1 3.7 Flagellar motor switch protein FliN compare
Pf6N2E2_5695 +1.1 6.2 Flagellar basal-body rod protein FlgC compare
Pf6N2E2_2599 +1.1 6.5 Flagellar biosynthesis protein FliS compare
Pf6N2E2_2592 +1.0 5.0 Flagellar motor switch protein FliG compare
Pf6N2E2_2594 +1.0 5.8 Flagellar hook-basal body complex protein FliE compare
Pf6N2E2_1215 +1.0 2.0 probable membrane protein YPO2362 compare
Pf6N2E2_3027 +1.0 1.6 Baseplate assembly protein V compare
Pf6N2E2_2114 +1.0 2.0 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_3475 +1.0 2.0 hypothetical protein compare
Pf6N2E2_2573 +1.0 5.2 RNA polymerase sigma factor for flagellar operon compare
Pf6N2E2_2628 +1.0 4.6 Flagellar basal-body rod protein FlgF compare
Pf6N2E2_2589 +1.0 3.3 Flagellar protein FliJ compare
Pf6N2E2_1824 +1.0 1.5 hypothetical protein compare
Pf6N2E2_1920 +1.0 2.7 Rubredoxin compare
Pf6N2E2_6058 +1.0 4.4 FIG139976: hypothetical protein compare
Pf6N2E2_3792 +1.0 5.2 Glucans biosynthesis protein G precursor compare
Pf6N2E2_2593 +0.9 3.9 Flagellar M-ring protein FliF compare
Pf6N2E2_2590 +0.9 6.5 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_2626 +0.9 5.9 Flagellar L-ring protein FlgH compare
Pf6N2E2_1935 +0.9 2.0 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_2984 +0.9 1.7 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_2577 +0.9 5.8 Flagellar biosynthesis protein FlhB compare
Pf6N2E2_2561 +0.9 2.0 FIG00955434: hypothetical protein compare
Pf6N2E2_5226 +0.9 1.4 FIG00955589: hypothetical protein compare
Pf6N2E2_2623 +0.9 6.7 Flagellar hook-associated protein FlgK compare
Pf6N2E2_1617 +0.9 1.0 COG2199: FOG: GGDEF domain compare
Pf6N2E2_6059 +0.9 2.8 FIG008443: hypothetical protein compare
Pf6N2E2_2580 +0.9 4.0 Flagellar biosynthesis protein FliP compare
Pf6N2E2_2602 +0.9 5.4 Flagellin protein FlaA compare
Pf6N2E2_4305 +0.9 1.5 FIG00959590: hypothetical protein compare
Pf6N2E2_1424 +0.9 1.7 transcriptional regulator, TetR family compare
Pf6N2E2_3344 +0.8 3.2 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD compare
Pf6N2E2_476 +0.8 2.6 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_5691 +0.8 6.4 Flagellar basal-body P-ring formation protein FlgA compare
Pf6N2E2_2585 +0.8 5.2 Flagellar hook-length control protein FliK compare
Pf6N2E2_5589 +0.8 4.7 Sodium-type flagellar protein motY precursor compare
Pf6N2E2_2625 +0.8 2.4 Flagellar P-ring protein FlgI compare
Pf6N2E2_4351 +0.8 4.7 Predicted signal transduction protein compare
Pf6N2E2_1246 +0.8 1.6 FIG00961372: hypothetical protein compare
Pf6N2E2_3791 +0.8 5.3 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_923 +0.8 1.8 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_3085 +0.8 1.6 FIG00954614: hypothetical protein compare
Pf6N2E2_5677 +0.8 1.0 Carbon storage regulator compare
Pf6N2E2_4618 +0.8 2.4 Chemotaxis signal transduction protein compare
Pf6N2E2_5640 +0.8 1.4 FIG00955597: hypothetical protein compare
Pf6N2E2_445 +0.8 3.3 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_5555 +0.8 1.2 Cold shock protein CspA compare
Pf6N2E2_2591 +0.8 3.0 Flagellar assembly protein FliH compare
Pf6N2E2_4499 +0.8 2.5 protein of unknown function DUF86 compare
Pf6N2E2_1885 +0.8 2.7 Transcriptional regulator, AraC family compare
Pf6N2E2_311 +0.8 2.3 hypothetical protein compare
Pf6N2E2_5696 +0.8 2.9 Flagellar basal-body rod modification protein FlgD compare
Pf6N2E2_1972 +0.8 1.9 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_5491 +0.8 5.4 FOG: GGDEF domain compare
Pf6N2E2_4147 +0.8 4.9 Fused spore maturation proteins A and B compare
Pf6N2E2_1514 +0.7 2.4 lipoprotein OprI, putative compare
Pf6N2E2_4969 +0.7 1.1 hypothetical protein compare
Pf6N2E2_1412 +0.7 2.2 hypothetical protein compare
Pf6N2E2_595 +0.7 2.3 Arsenical resistance operon repressor compare
Pf6N2E2_2576 +0.7 5.2 Flagellar biosynthesis protein FlhA compare
Pf6N2E2_571 +0.7 3.2 ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_1336 +0.7 2.6 AraC family transcription regulator compare
Pf6N2E2_3983 +0.7 3.5 Membrane bound c-di-GMP receptor LapD compare
Pf6N2E2_338 +0.7 1.5 Transcriptional regulator, AraC family compare
Pf6N2E2_1502 +0.7 0.9 Two-component system regulatory protein compare
Pf6N2E2_2103 +0.7 1.2 hypothetical protein compare
Pf6N2E2_1032 +0.7 0.8 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_2622 +0.7 4.9 Flagellar hook-associated protein FlgL compare
Pf6N2E2_3161 +0.7 2.4 hypothetical protein compare
Pf6N2E2_3529 +0.7 0.8 Toxin A compare
Pf6N2E2_1666 +0.7 2.9 Transcriptional regulator, LysR family compare
Pf6N2E2_5236 +0.7 2.4 hypothetical protein compare
Pf6N2E2_3179 +0.7 1.4 FIG021952: putative membrane protein compare
Pf6N2E2_2563 +0.7 5.6 FIG00953562: hypothetical protein compare
Pf6N2E2_399 +0.7 2.2 Iron siderophore sensor protein compare
Pf6N2E2_1213 +0.7 1.6 hypothetical protein compare
Pf6N2E2_1886 +0.7 1.0 hypothetical protein compare
Pf6N2E2_2825 +0.7 2.7 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_5044 +0.7 2.1 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_5049 +0.7 0.8 acetyltransferase, GNAT family compare
Pf6N2E2_6087 +0.7 2.3 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_4541 +0.7 1.1 hypothetical protein compare
Pf6N2E2_3325 +0.7 2.0 ABC transporter, ATP-binding protein compare
Pf6N2E2_4349 +0.7 2.2 Superfamily II DNA and RNA helicases compare
Pf6N2E2_2284 +0.7 2.0 Cell division inhibitor-related protein compare
Pf6N2E2_1022 +0.7 1.3 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf6N2E2_3455 +0.7 1.8 Integral membrane protein YfiB compare
Pf6N2E2_3664 +0.6 4.5 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_3014 +0.6 1.5 P2-like prophage tail protein X compare
Pf6N2E2_4889 +0.6 3.0 Putative transport protein compare
Pf6N2E2_4477 +0.6 2.0 Z-ring-associated protein ZapA compare
Pf6N2E2_2624 +0.6 3.5 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
Pf6N2E2_3612 +0.6 1.7 HflK protein compare
Pf6N2E2_4030 +0.6 4.7 Biofilm PGA synthesis deacetylase PgaB (EC 3.-) compare
Pf6N2E2_1599 +0.6 2.3 Cytochrome c-type protein NapC compare
Pf6N2E2_464 +0.6 1.7 Sensory histidine kinase QseC compare
Pf6N2E2_2487 +0.6 0.8 FIG00956090: hypothetical protein compare
Pf6N2E2_4548 +0.6 1.9 hypothetical protein compare
Pf6N2E2_4028 +0.6 4.1 Biofilm PGA synthesis auxiliary protein PgaD compare
Pf6N2E2_2121 +0.6 0.9 hypothetical protein compare
Pf6N2E2_2970 +0.6 1.2 methylated-DNA--protein-cysteine methyltransferase-related protein compare
Pf6N2E2_2285 +0.6 0.7 FIG00954079: hypothetical protein compare
Pf6N2E2_746 +0.6 0.6 FIG00958097: hypothetical protein compare
Pf6N2E2_4640 +0.6 1.2 hypothetical protein compare
Pf6N2E2_1876 +0.6 1.9 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) compare
Pf6N2E2_357 +0.6 2.2 hypothetical protein compare
Pf6N2E2_2499 +0.6 1.6 Competence protein ComEA helix-hairpin-helix region precursor compare
Pf6N2E2_4531 +0.6 1.0 hypothetical protein compare
Pf6N2E2_1712 +0.6 1.6 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_3122 +0.6 1.3 Chemotaxis signal transduction protein compare
Pf6N2E2_2788 +0.6 1.1 Transcriptional regulator, AsnC family compare
Pf6N2E2_1747 +0.6 1.7 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_3568 +0.6 1.6 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_5910 +0.6 1.8 Flp pilus assembly protein RcpC/CpaB compare
Pf6N2E2_4988 +0.6 2.7 Antiholin-like protein LrgA compare
Pf6N2E2_3171 +0.6 0.9 hypothetical protein compare
Pf6N2E2_2022 +0.6 2.6 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_2885 +0.6 2.3 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_1179 +0.6 2.0 hypothetical protein compare
Pf6N2E2_3663 +0.6 2.9 Glycosyl transferase compare
Pf6N2E2_2181 +0.6 0.9 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_3526 +0.6 1.8 hypothetical protein compare
Pf6N2E2_882 +0.6 2.0 FIG00961517: hypothetical protein compare
Pf6N2E2_6065 +0.6 1.3 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_1340 +0.6 1.5 major pilin protein fimA compare
Pf6N2E2_2600 +0.6 4.4 Flagellar hook-associated protein FliD compare
Pf6N2E2_2156 +0.6 1.2 Putative polyketide synthase (Fragment) compare
Pf6N2E2_4029 +0.6 2.5 Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-) compare
Pf6N2E2_3828 +0.6 1.4 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf6N2E2_5923 +0.6 1.7 FIG00956241: hypothetical protein compare
Pf6N2E2_1792 +0.5 1.6 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf6N2E2_5863 +0.5 1.9 FIG00956080: hypothetical protein compare
Pf6N2E2_718 +0.5 1.9 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Pf6N2E2_5720 +0.5 3.8 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_1027 +0.5 1.3 Cysteine dioxygenase (EC 1.13.11.20) compare
Pf6N2E2_5531 +0.5 2.5 hypothetical protein compare
Pf6N2E2_4747 +0.5 1.5 Transmembrane sensor compare
Pf6N2E2_101 +0.5 2.1 CigR (Putative inner membrane protein) compare
Pf6N2E2_884 +0.5 1.9 Inosose isomerase (EC 5.3.99.-) compare
Pf6N2E2_1313 +0.5 1.7 2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-) compare
Pf6N2E2_4545 +0.5 1.0 hypothetical protein compare
Pf6N2E2_3901 +0.5 1.4 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Pf6N2E2_4993 +0.5 1.5 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_2278 +0.5 4.4 Transcription-repair coupling factor compare
Pf6N2E2_5128 +0.5 1.3 COG1496: Uncharacterized conserved protein compare
Pf6N2E2_5689 +0.5 1.5 Flagellar biosynthesis protein FlgN compare
Pf6N2E2_241 +0.5 0.7 hypothetical protein compare
Pf6N2E2_2572 +0.5 1.2 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_766 +0.5 1.8 Fap protein with C39 domain compare
Pf6N2E2_4506 +0.5 1.3 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_4075 +0.5 2.4 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_928 +0.5 1.6 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf6N2E2_2279 +0.5 1.6 FIG00954981: hypothetical protein compare
Pf6N2E2_5877 +0.5 1.2 Phosphohistidine phosphatase SixA compare
Pf6N2E2_1715 +0.5 1.2 hypothetical protein compare
Pf6N2E2_4300 +0.5 1.2 Uncharacterized protein similar to VCA0109 compare
Pf6N2E2_3326 +0.5 0.9 hypothetical protein compare
Pf6N2E2_2300 +0.5 1.1 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM compare
Pf6N2E2_1729 +0.5 2.1 FIG00464907: hypothetical protein compare
Pf6N2E2_3438 +0.5 1.9 Glyoxalase family protein compare
Pf6N2E2_4216 +0.5 1.6 Transcriptional regulator of glmS gene, DeoR family compare
Pf6N2E2_814 +0.5 2.0 hypothetical protein compare
Pf6N2E2_3788 +0.5 1.9 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_4540 +0.5 1.7 hypothetical protein compare
Pf6N2E2_4594 +0.5 1.1 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf6N2E2_2304 +0.5 2.7 Predicted hydrolase of the alpha/beta-hydrolase fold compare
Pf6N2E2_5866 +0.5 2.7 dienelactone hydrolase family protein compare
Pf6N2E2_28 +0.5 1.3 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_4031 +0.5 4.2 Biofilm PGA outer membrane secretin PgaA compare
Pf6N2E2_1074 +0.5 1.0 FIG00953356: hypothetical protein compare
Pf6N2E2_1796 +0.5 1.9 Glycine cleavage system transcriptional activator GcvA compare
Pf6N2E2_728 +0.5 1.6 Nitrate/nitrite transporter compare
Pf6N2E2_4340 +0.5 2.4 Outer membrane protein ImpK/VasF, OmpA/MotB domain compare
Pf6N2E2_5025 +0.5 4.4 Sensor histidine kinase compare
Pf6N2E2_1697 +0.5 2.1 Alkanesulfonate monooxygenase (EC 1.14.14.5) compare
Pf6N2E2_5272 +0.5 1.5 Dihydroneopterin triphosphate epimerase compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source 4-Hydroxybenzoic Acid in Pseudomonas fluorescens FW300-N2E2

For carbon source 4-Hydroxybenzoic Acid across organisms