Experiment set8IT034 for Methanococcus maripaludis S2

Compare to:

Mc formate, casamino free, with 5mM L-Glutamate and 5mM L-Proline

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS01370 +3.1 14.7 acetate--CoA ligase family protein compare
MMP_RS07115 +1.5 7.8 MBL fold metallo-hydrolase compare
MMP_RS03385 +1.4 2.1 cation diffusion facilitator family transporter compare
MMP_RS03215 +1.3 7.2 MBL fold metallo-hydrolase compare
MMP_RS07125 +1.2 4.8 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS03300 +1.2 1.1 TOBE domain-containing protein compare
MMP_RS05640 +1.2 6.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS01100 +1.2 2.3 ABC transporter ATP-binding protein compare
MMP_RS06600 +1.1 2.4 class III signal peptide-containing protein compare
MMP_RS06575 +1.1 2.5 fluoride efflux transporter CrcB compare
MMP_RS07820 +1.0 4.3 UPF0104 family protein compare
MMP_RS06395 +1.0 4.5 ThiF family adenylyltransferase compare
MMP_RS06670 +0.9 3.6 glucose-6-phosphate isomerase compare
MMP_RS07130 +0.9 4.6 coenzyme F420 hydrogenase subunit gamma compare
MMP_RS05355 +0.9 0.9 hypothetical protein compare
MMP_RS07120 +0.8 5.3 coenzyme F420 hydrogenase subunit alpha compare
MMP_RS01775 +0.8 1.9 TIGR00297 family protein compare
MMP_RS08090 +0.8 4.7 hypothetical protein compare
MMP_RS03320 +0.8 2.2 metal-dependent transcriptional regulator compare
MMP_RS05970 +0.8 4.0 class II SORL domain-containing protein compare
MMP_RS06570 +0.8 3.0 DUF190 domain-containing protein compare
MMP_RS02390 +0.8 3.0 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMP_RS06585 +0.8 1.6 DMT family protein compare
MMP_RS00635 +0.8 3.7 energy-coupling factor transporter transmembrane protein EcfT compare
MMP_RS07890 +0.7 1.8 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS01620 +0.7 2.3 hypothetical protein compare
MMP_RS00825 +0.7 2.8 fumarylacetoacetate hydrolase family protein compare
MMP_RS07815 +0.7 1.2 DUF2120 domain-containing protein compare
MMP_RS03390 +0.7 2.6 malate dehydrogenase compare
MMP_RS08775 +0.7 2.8 methanogenesis marker 9 domain-containing protein compare
MMP_RS06110 +0.7 2.0 ATP-dependent protease LonB compare
MMP_RS02595 +0.7 1.1 putative zinc-binding protein compare
MMP_RS08555 +0.7 2.1 hypothetical protein compare
MMP_RS07620 +0.7 1.8 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS05525 +0.7 3.7 calcium/sodium antiporter compare
MMP_RS07895 +0.7 1.7 cytochrome c compare
MMP_RS03965 +0.7 1.8 hypothetical protein compare
MMP_RS08620 +0.7 3.4 flagellar accessory protein FlaH compare
MMP_RS06900 +0.7 1.4 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS08500 +0.7 2.7 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS00395 +0.6 1.2 MGMT family protein compare
MMP_RS00675 +0.6 0.8 nitroreductase family protein compare
MMP_RS05435 +0.6 2.2 5'/3'-nucleotidase SurE compare
MMP_RS00915 +0.6 2.1 DUF116 domain-containing protein compare
MMP_RS01685 +0.6 1.9 indolepyruvate oxidoreductase subunit beta compare
MMP_RS07970 +0.6 2.2 hypothetical protein compare
MMP_RS02480 +0.6 0.9 hypothetical protein compare
MMP_RS02490 +0.6 2.3 hypothetical protein compare
MMP_RS00880 +0.6 2.2 ribosome assembly RNA-binding protein YhbY compare
MMP_RS04740 +0.6 3.1 DUF473 domain-containing protein compare
MMP_RS02265 +0.6 1.7 nitroreductase family protein compare
MMP_RS06500 +0.6 3.5 ATP-binding protein compare
MMP_RS04595 +0.5 2.4 hypothetical protein compare
MMP_RS05720 +0.5 2.8 signal recognition particle subunit SRP19/SEC65 family protein compare
MMP_RS00185 +0.5 3.2 potassium channel protein compare
MMP_RS05535 +0.5 1.7 hypothetical protein compare
MMP_RS05140 +0.5 2.0 helix-turn-helix transcriptional regulator compare
MMP_RS00910 +0.5 2.2 2-phosphosulfolactate phosphatase compare
MMP_RS00660 +0.5 2.8 alkaline phosphatase family protein compare
MMP_RS01895 +0.5 4.0 flippase compare
MMP_RS08265 +0.5 1.6 rubrerythrin compare
MMP_RS01980 +0.5 3.4 trimeric intracellular cation channel family protein compare
MMP_RS03785 +0.5 1.2 cupin domain-containing protein compare
MMP_RS06550 +0.5 3.6 AMP-binding protein compare
MMP_RS04850 +0.5 4.0 UPF0254 family protein compare
MMP_RS06610 +0.5 2.0 DUF2334 domain-containing protein compare
MMP_RS06965 +0.5 1.7 TIGR04014 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS02470 +0.5 0.9 helix-turn-helix transcriptional regulator compare
MMP_RS01095 +0.5 2.9 iron ABC transporter permease compare
MMP_RS01055 +0.5 1.9 hypothetical protein compare
MMP_RS08835 +0.5 2.4 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein compare
MMP_RS08275 +0.5 1.9 hypothetical protein compare
MMP_RS03615 +0.5 3.3 4Fe-4S binding protein compare
MMP_RS01875 +0.5 3.2 N-acetyltransferase compare
MMP_RS06290 +0.5 1.6 DNA repair and recombination protein RadA compare
MMP_RS03010 +0.5 3.3 cupin domain-containing protein compare
MMP_RS08930 +0.5 0.9 hypothetical protein compare
MMP_RS08455 +0.5 1.5 multiprotein bridging factor aMBF1 compare
MMP_RS08590 +0.5 2.0 flagellin compare
MMP_RS00665 +0.5 2.0 hypothetical protein compare
MMP_RS06525 +0.5 0.6 YciI family protein compare
MMP_RS01540 +0.5 1.4 DUF504 domain-containing protein compare
MMP_RS02915 +0.5 2.4 amino acid ABC transporter permease compare
MMP_RS06435 +0.5 2.0 CBS domain-containing protein compare
MMP_RS00520 +0.5 0.6 RNA polymerase Rpb4 family protein compare
MMP_RS08890 +0.4 3.5 glycosyltransferase family 4 protein compare
MMP_RS02675 +0.4 1.4 hypothetical protein compare
MMP_RS08160 +0.4 2.0 EamA family transporter compare
MMP_RS08340 +0.4 2.0 4Fe-4S binding protein compare
MMP_RS05825 +0.4 1.8 peptidyl-prolyl cis-trans isomerase compare
MMP_RS04050 +0.4 1.6 hypothetical protein compare
MMP_RS03280 +0.4 1.8 pyridoxamine 5'-phosphate oxidase family protein compare
MMP_RS05980 +0.4 2.2 ferritin compare
MMP_RS08315 +0.4 0.9 S-methyl-5-thioribose-1-phosphate isomerase compare
MMP_RS04520 +0.4 0.9 nucleoside deaminase compare
MMP_RS01640 +0.4 2.7 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMP_RS01950 +0.4 2.7 hypothetical protein compare
MMP_RS03490 +0.4 0.9 DUF2115 domain-containing protein compare
MMP_RS02415 +0.4 1.1 site-specific integrase compare
MMP_RS03245 +0.4 2.2 DNA repair and recombination protein RadB compare
MMP_RS00100 +0.4 2.7 tRNA pseudouridine(13) synthase TruD compare
MMP_RS01130 +0.4 2.0 flavoprotein compare
MMP_RS01940 +0.4 1.3 MoxR family ATPase compare
MMP_RS00730 +0.4 1.4 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS01030 +0.4 1.1 MTAP family purine nucleoside phosphorylase compare
MMP_RS08155 +0.4 1.9 hypothetical protein compare
MMP_RS03130 +0.4 2.1 hypothetical protein compare
MMP_RS06365 +0.4 1.1 hypothetical protein compare
MMP_RS08625 +0.4 2.3 type II/IV secretion system ATPase subunit compare
MMP_RS03895 +0.4 1.3 hypothetical protein compare
MMP_RS00955 +0.4 2.2 coenzyme gamma-F420-2:alpha-L-glutamate ligase compare
MMP_RS01650 +0.4 0.4 sulfurtransferase TusA family protein compare
MMP_RS09025 +0.4 0.5 hypothetical protein compare
MMP_RS03775 +0.4 1.0 4Fe-4S dicluster domain-containing protein compare
MMP_RS07695 +0.4 2.0 DUF3236 domain-containing protein compare
MMP_RS01930 +0.4 3.0 hypothetical protein compare
MMP_RS07390 +0.4 0.8 cell division protein FtsZ compare
MMP_RS08470 +0.4 2.3 ATP-binding cassette domain-containing protein compare
MMP_RS08175 +0.4 1.8 7-cyano-7-deazaguanine synthase compare
MMP_RS07625 +0.4 0.8 cobalt ECF transporter T component CbiQ compare
MMP_RS08130 +0.4 2.0 IGHMBP2 family helicase compare
MMP_RS07075 +0.4 1.2 phosphomannomutase/phosphoglucomutase compare
MMP_RS07135 +0.4 1.7 coenzyme F420 hydrogenase subunit beta compare
MMP_RS02745 +0.4 1.1 hypothetical protein compare
MMP_RS00125 +0.4 0.6 DUF2798 domain-containing protein compare
MMP_RS07770 +0.4 1.5 alanine racemase compare
MMP_RS01885 +0.4 2.1 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS05795 +0.4 1.2 redox-regulated ATPase YchF compare
MMP_RS05820 +0.4 1.8 RNA-binding transcriptional accessory protein compare
MMP_RS01910 +0.4 2.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS08640 +0.4 1.9 TIM barrel protein compare
MMP_RS07540 +0.4 1.1 CBS domain-containing protein compare
MMP_RS08670 +0.4 1.9 metallophosphoesterase compare
MMP_RS06765 +0.3 2.0 flap endonuclease-1 compare
MMP_RS03325 +0.3 2.1 hypothetical protein compare
MMP_RS05110 +0.3 1.6 16S ribosomal RNA methyltransferase A compare
MMP_RS07875 +0.3 1.5 hypothetical protein compare
MMP_RS06065 +0.3 2.7 iron ABC transporter substrate-binding protein compare
MMP_RS07700 +0.3 2.0 DUF1188 domain-containing protein compare
MMP_RS02870 +0.3 2.0 hypothetical protein compare
MMP_RS07915 +0.3 1.2 DUF4870 domain-containing protein compare
MMP_RS02645 +0.3 1.9 ArsR family transcriptional regulator compare
MMP_RS00335 +0.3 1.2 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMP_RS00085 +0.3 1.8 DNA cytosine methyltransferase compare
MMP_RS00800 +0.3 1.8 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS01455 +0.3 1.5 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS08705 +0.3 2.1 sulfopyruvate decarboxylase subunit beta compare
MMP_RS08755 +0.3 2.1 sodium:solute symporter family protein compare
MMP_RS02005 +0.3 1.6 RNA ligase compare
MMP_RS04325 +0.3 1.8 MtaA/CmuA family methyltransferase compare
MMP_RS01880 +0.3 1.6 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS06535 +0.3 1.4 2-oxoacid:acceptor oxidoreductase family protein compare
MMP_RS06190 +0.3 1.4 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO compare
MMP_RS00375 +0.3 1.9 ammonium transporter compare
MMP_RS05345 +0.3 1.6 hypothetical protein compare
MMP_RS00795 +0.3 1.5 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS09010 +0.3 1.6 hypothetical protein compare
MMP_RS05975 +0.3 0.5 hypothetical protein compare
MMP_RS06310 +0.3 1.4 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS00630 +0.3 1.8 ECF transporter S component compare
MMP_RS00650 +0.3 1.6 ABC transporter ATP-binding protein compare
MMP_RS02230 +0.3 1.7 sodium-dependent transporter compare
MMP_RS04965 +0.3 1.5 thioredoxin family protein compare
MMP_RS02985 +0.3 0.8 hypothetical protein compare
MMP_RS06440 +0.3 1.7 CBS domain-containing protein compare
MMP_RS05470 +0.3 2.0 DUF523 and DUF1722 domain-containing protein compare
MMP_RS01975 +0.3 2.3 hypothetical protein compare
MMP_RS00725 +0.3 0.9 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS05830 +0.3 0.8 peptidyl-prolyl cis-trans isomerase compare
MMP_RS07905 +0.3 0.8 DUF3343 domain-containing protein compare
MMP_RS08215 +0.3 0.7 DUF483 domain-containing protein compare
MMP_RS01945 +0.3 1.6 DUF4350 domain-containing protein compare
MMP_RS03765 +0.3 1.2 CopG family ribbon-helix-helix protein compare
MMP_RS05615 +0.3 2.0 radical SAM protein compare
MMP_RS02440 +0.3 1.2 hypothetical protein compare
MMP_RS04425 +0.3 2.2 APC family permease compare
MMP_RS08400 +0.3 0.6 MJ0307 family thioredoxin compare
MMP_RS05275 +0.3 1.7 AI-2E family transporter compare
MMP_RS08365 +0.3 1.2 energy conserving hydrogenase EhbF compare
MMP_RS06055 +0.3 1.0 peroxiredoxin compare
MMP_RS03840 +0.3 1.0 hypothetical protein compare
MMP_RS01060 +0.3 1.4 calcium/sodium antiporter compare
MMP_RS02305 +0.3 1.6 DUF378 domain-containing protein compare
MMP_RS01935 +0.3 1.8 DUF58 domain-containing protein compare
MMP_RS06770 +0.3 0.9 DHH family phosphoesterase compare
MMP_RS02835 +0.3 0.7 CGGC domain-containing protein compare
MMP_RS00990 +0.3 1.1 hypothetical protein compare
MMP_RS03065 +0.3 0.8 AzlC family ABC transporter permease compare
MMP_RS00450 +0.3 0.4 4Fe-4S binding protein compare
MMP_RS04145 +0.3 0.5 hypothetical protein compare
MMP_RS07420 +0.3 1.2 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS03870 +0.3 1.1 purine NTPase compare
MMP_RS03900 +0.3 1.2 minichromosome maintenance protein MCM compare
MMP_RS07560 +0.3 0.9 prefoldin subunit alpha compare
MMP_RS00145 +0.3 1.2 ATP-dependent Clp protease proteolytic subunit compare
MMP_RS06080 +0.3 1.8 radical SAM protein compare
MMP_RS00135 +0.3 1.1 DUF2121 domain-containing protein compare
MMP_RS04120 +0.3 1.6 hypothetical protein compare
MMP_RS06910 +0.3 1.6 RlmF-related methyltransferase compare
MMP_RS01460 +0.3 0.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 L-Glutamic acid monopotassium salt monohydrate across organisms