Experiment set8IT034 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM

200 most important genes:

  gene name fitness t score description  
BWI76_RS26665 -6.8 -4.7 DNA-binding response regulator compare
BWI76_RS26570 -5.9 -4.1 anion permease compare
BWI76_RS13920 -5.9 -8.9 magnesium-translocating P-type ATPase compare
BWI76_RS20155 -5.8 -3.6 NADH-quinone oxidoreductase subunit I compare
BWI76_RS23920 -5.8 -7.9 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS04510 -5.7 -3.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS00855 -5.4 -9.6 argininosuccinate lyase compare
BWI76_RS19840 -5.4 -2.0 hypothetical protein compare
BWI76_RS00965 -5.3 -2.0 acetolactate synthase 2 small subunit compare
BWI76_RS20965 -5.2 -5.8 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS18940 -5.1 -6.5 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS01615 -5.1 -8.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS18955 -4.9 -8.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS03010 -4.9 -8.0 ornithine carbamoyltransferase compare
BWI76_RS18920 -4.9 -4.9 ATP phosphoribosyltransferase compare
BWI76_RS04465 -4.9 -6.7 carbamoyl-phosphate synthase small subunit compare
BWI76_RS04250 -4.8 -7.6 homoserine kinase compare
BWI76_RS04470 -4.8 -12.2 carbamoyl phosphate synthase large subunit compare
BWI76_RS04255 -4.8 -10.0 threonine synthase compare
BWI76_RS09760 -4.7 -5.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS09755 -4.7 -8.6 phosphoserine transaminase compare
BWI76_RS19845 -4.7 -6.2 phosphatase compare
BWI76_RS11845 -4.6 -3.5 tryptophan synthase subunit beta compare
BWI76_RS04665 -4.5 -19.1 3-isopropylmalate dehydratase small subunit compare
BWI76_RS05840 -4.4 -7.6 glutamate 5-kinase compare
BWI76_RS00400 -4.4 -2.9 glutamine synthetase compare
BWI76_RS00785 -4.4 -6.2 cystathionine gamma-synthase compare
BWI76_RS01210 -4.4 -3.2 tyrosine recombinase XerC compare
BWI76_RS04675 -4.4 -6.1 3-isopropylmalate dehydrogenase compare
BWI76_RS23360 -4.3 -4.4 diaminopimelate decarboxylase compare
BWI76_RS23265 -4.2 -3.9 hypothetical protein compare
BWI76_RS00805 -4.2 -4.9 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS04160 -4.2 -7.2 phosphoserine phosphatase compare
BWI76_RS04685 -4.2 -9.5 putative leucine operon leader peptide compare
BWI76_RS18930 -4.2 -6.5 histidinol-phosphate transaminase compare
BWI76_RS24400 -4.1 -7.6 outer membrane channel protein TolC compare
BWI76_RS10990 -4.1 -2.9 dihydroorotase compare
BWI76_RS00345 -4.0 -5.5 protein disulfide oxidoreductase DsbA compare
BWI76_RS00850 -4.0 -8.0 acetylglutamate kinase compare
BWI76_RS11840 -4.0 -7.0 tryptophan synthase subunit alpha compare
BWI76_RS26440 -4.0 -2.1 hypothetical protein compare
BWI76_RS18935 -4.0 -8.7 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS20435 -4.0 -2.1 chorismate synthase compare
BWI76_RS07070 -4.0 -7.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS18950 -4.0 -3.0 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS04680 -4.0 -13.1 2-isopropylmalate synthase compare
BWI76_RS25215 -3.9 -6.7 phospholipid-binding protein MlaC compare
BWI76_RS02815 -3.9 -2.6 fructose-bisphosphatase class I compare
BWI76_RS15115 -3.9 -7.0 MFS transporter compare
BWI76_RS25225 -3.8 -8.5 ABC transporter permease compare
BWI76_RS07065 -3.8 -7.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS20650 -3.8 -2.6 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS20475 -3.7 -2.8 phospholipid-binding lipoprotein MlaA compare
BWI76_RS20895 -3.7 -5.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS04245 -3.6 -13.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS23240 -3.6 -3.5 exonuclease V subunit gamma compare
BWI76_RS00975 -3.6 -8.1 dihydroxy-acid dehydratase compare
BWI76_RS25220 -3.6 -4.1 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS00990 -3.6 -10.2 ketol-acid reductoisomerase compare
BWI76_RS06525 -3.6 -7.4 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS11850 -3.5 -8.5 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS09660 -3.5 -2.4 DNA translocase FtsK compare
BWI76_RS23230 -3.4 -2.4 exodeoxyribonuclease V subunit beta compare
BWI76_RS18135 -3.4 -5.3 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS24285 -3.4 -7.9 cystathionine beta-lyase compare
BWI76_RS11965 -3.4 -4.5 orotidine-5'-phosphate decarboxylase compare
BWI76_RS18140 -3.4 -6.4 zinc ABC transporter permease compare
BWI76_RS20350 -3.4 -5.0 amidophosphoribosyltransferase compare
BWI76_RS25230 -3.3 -9.5 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS21475 -3.3 -6.4 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS05835 -3.3 -3.8 gamma-glutamyl-phosphate reductase compare
BWI76_RS21465 -3.3 -4.1 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS21265 -3.3 -10.6 phosphoribosylformylglycinamidine synthase compare
BWI76_RS04670 -3.3 -6.5 3-isopropylmalate dehydratase large subunit compare
BWI76_RS05015 -3.3 -2.7 transcriptional regulator compare
BWI76_RS25115 -3.3 -8.7 argininosuccinate synthase compare
BWI76_RS23220 -3.3 -6.5 amino-acid N-acetyltransferase compare
BWI76_RS09640 -3.2 -4.9 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS18925 -3.2 -5.2 histidinol dehydrogenase compare
BWI76_RS00960 -3.2 -7.4 acetolactate synthase 2 catalytic subunit compare
BWI76_RS11860 -3.2 -10.0 anthranilate synthase component I compare
BWI76_RS04240 -3.2 -3.7 thr operon leader peptide compare
BWI76_RS01330 -3.2 -4.8 twin-arginine translocase subunit TatC compare
BWI76_RS04530 -3.1 -2.8 peptidylprolyl isomerase SurA compare
BWI76_RS01325 -3.1 -2.2 twin-arginine translocase subunit TatB compare
BWI76_RS20355 -3.1 -3.3 colicin V production protein compare
BWI76_RS23480 -3.1 -11.4 EAL domain-containing protein compare
BWI76_RS01655 -3.1 -7.1 homoserine O-succinyltransferase compare
BWI76_RS08385 -3.1 -3.8 citrate (Si)-synthase compare
BWI76_RS24850 -3.0 -6.2 DeoR family transcriptional regulator compare
BWI76_RS08500 -3.0 -4.7 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS23365 -3.0 -7.9 LysR family transcriptional regulator compare
BWI76_RS26670 -3.0 -7.7 two-component sensor histidine kinase compare
BWI76_RS26085 -2.9 -1.6 3-dehydroquinate synthase compare
BWI76_RS00980 -2.9 -9.6 PLP-dependent threonine dehydratase compare
BWI76_RS00180 -2.9 -2.1 F0F1 ATP synthase subunit epsilon compare
BWI76_RS25645 -2.9 -6.7 shikimate dehydrogenase compare
BWI76_RS21070 -2.9 -2.2 outer membrane protein assembly factor BamB compare
BWI76_RS00845 -2.8 -7.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS09645 -2.7 -2.5 thioredoxin-disulfide reductase compare
BWI76_RS01610 -2.7 -6.4 phosphoribosylamine--glycine ligase compare
BWI76_RS04645 -2.7 -3.1 3-dehydroquinase compare
BWI76_RS00835 -2.7 -10.3 phosphoenolpyruvate carboxylase compare
BWI76_RS25300 -2.6 -5.0 hybrid sensor histidine kinase/response regulator compare
BWI76_RS06780 -2.6 -4.8 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS09910 -2.6 -13.6 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS12145 -2.5 -3.3 hypothetical protein compare
BWI76_RS06530 -2.5 -6.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS11855 -2.5 -6.5 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS15225 -2.4 -3.4 DeoR family transcriptional regulator compare
BWI76_RS01800 -2.3 -3.7 glucose-6-phosphate isomerase compare
BWI76_RS04705 -2.3 -5.4 DNA-binding transcriptional regulator FruR compare
BWI76_RS13915 -2.3 -5.0 magnesium transport protein MgtC compare
BWI76_RS27385 -2.3 -7.1 orotate phosphoribosyltransferase compare
BWI76_RS09635 -2.3 -2.5 amino acid ABC transporter ATP-binding protein compare
BWI76_RS06775 -2.3 -11.8 multidrug efflux RND transporter permease subunit compare
BWI76_RS15955 -2.2 -2.8 transcriptional regulator compare
BWI76_RS18130 -2.2 -1.9 zinc ABC transporter substrate-binding protein compare
BWI76_RS25600 -2.2 -1.4 tRNA-Thr compare
BWI76_RS02410 -2.2 -2.0 EF-P beta-lysylation protein EpmB compare
BWI76_RS21000 -2.1 -5.5 exopolyphosphatase compare
BWI76_RS17190 -2.1 -2.5 TonB system transport protein TonB compare
BWI76_RS11430 -2.1 -1.6 lipoprotein compare
BWI76_RS00875 -2.1 -5.7 DNA-binding transcriptional regulator FabR compare
BWI76_RS06765 -2.1 -3.6 transcriptional regulator compare
BWI76_RS24900 -2.1 -2.7 DeoR family transcriptional regulator compare
BWI76_RS06770 -2.0 -8.4 Hha toxicity attenuator compare
BWI76_RS22625 -2.0 -2.3 transcriptional regulator compare
BWI76_RS02995 -2.0 -5.1 aspartate carbamoyltransferase compare
BWI76_RS26000 -2.0 -7.0 aspartate aminotransferase family protein compare
BWI76_RS26890 -2.0 -2.0 hypothetical protein compare
BWI76_RS01275 -2.0 -5.6 LysR family transcriptional regulator compare
BWI76_RS00970 -1.9 -2.7 branched chain amino acid aminotransferase compare
BWI76_RS22240 -1.9 -5.9 transcriptional regulator compare
BWI76_RS19805 -1.9 -3.1 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS27390 -1.9 -3.4 ribonuclease PH compare
BWI76_RS00720 -1.9 -2.4 DNA-binding response regulator compare
BWI76_RS24100 -1.8 -4.0 YggS family pyridoxal phosphate enzyme compare
BWI76_RS15110 -1.8 -8.8 putative excinuclease ABC subunit A compare
BWI76_RS06485 -1.8 -3.1 cytochrome o ubiquinol oxidase subunit III compare
BWI76_RS16975 -1.7 -5.7 cysteine desufuration protein SufE compare
BWI76_RS16995 -1.7 -6.1 Fe-S cluster assembly protein SufB compare
BWI76_RS16990 -1.7 -5.0 ABC transporter ATP-binding protein compare
BWI76_RS08495 -1.7 -4.9 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS16535 -1.7 -5.2 MATE family efflux transporter conserved
BWI76_RS27310 -1.6 -6.9 glycosyltransferase compare
BWI76_RS12465 -1.6 -1.5 phage shock protein D compare
BWI76_RS01115 -1.6 -2.0 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS16980 -1.6 -4.2 bifunctional cysteine desulfurase/selenocysteine lyase compare
BWI76_RS11520 -1.6 -1.6 hypothetical protein compare
BWI76_RS17000 -1.6 -4.0 Fe-S cluster assembly scaffold SufA compare
BWI76_RS07740 -1.6 -1.3 Fe2+-enterobactin ABC transporter substrate-binding protein compare
BWI76_RS05555 -1.6 -1.9 Crl family RNA polymerase assembly factor compare
BWI76_RS04100 -1.6 -3.3 peptide chain release factor 3 compare
BWI76_RS17155 -1.6 -1.7 hypothetical protein compare
BWI76_RS05450 -1.6 -2.0 ribonuclease HI compare
BWI76_RS02530 -1.5 -1.2 tRNA dimethylallyltransferase compare
BWI76_RS00985 -1.5 -3.4 transcriptional regulator IlvY compare
BWI76_RS15840 -1.5 -2.8 prophage protein compare
BWI76_RS07475 -1.5 -1.2 DNA-binding transcriptional regulator RamA compare
BWI76_RS19905 -1.5 -3.2 OmpK36 porin compare
BWI76_RS21450 -1.5 -1.5 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS22650 -1.5 -4.9 lipoprotein NlpD compare
BWI76_RS25060 -1.5 -2.1 lipoprotein NlpI compare
BWI76_RS23830 -1.4 -5.4 hypothetical protein compare
BWI76_RS20170 -1.4 -3.8 NADH-quinone oxidoreductase subunit F compare
BWI76_RS01095 -1.4 -2.7 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS15850 -1.4 -1.2 DUF1317 domain-containing protein compare
BWI76_RS27475 -1.4 -6.4 regulatory protein GntR family protein compare
BWI76_RS27305 -1.4 -6.8 glycosyl transferase compare
BWI76_RS20270 -1.4 -5.4 hypothetical protein compare
BWI76_RS00450 -1.4 -2.7 formate dehydrogenase accessory protein FdhE compare
BWI76_RS00355 -1.4 -3.4 DNA polymerase I compare
BWI76_RS05135 -1.4 -3.1 iron-hydroxamate transporter substrate-binding subunit compare
BWI76_RS23825 -1.4 -5.3 hypothetical protein compare
BWI76_RS01080 -1.4 -6.6 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS27290 -1.4 -5.0 hypothetical protein compare
BWI76_RS15835 -1.3 -1.3 hypothetical protein compare
BWI76_RS17975 -1.3 -2.3 tail-specific protease compare
BWI76_RS21350 -1.3 -1.2 anti-RNA polymerase sigma factor SigE compare
BWI76_RS20160 -1.3 -3.3 NADH-quinone oxidoreductase subunit H compare
BWI76_RS18165 -1.3 -1.6 NUDIX pyrophosphatase compare
BWI76_RS25960 -1.3 -3.3 NUDIX hydrolase compare
BWI76_RS25505 -1.3 -7.3 RNase E specificity factor CsrD compare
BWI76_RS06730 -1.3 -2.6 lac repressor compare
BWI76_RS19850 -1.3 -2.2 tRNA-Pro compare
BWI76_RS20785 -1.2 -1.2 ethanolamine utilization protein EutJ compare
BWI76_RS26940 -1.2 -6.7 transcriptional regulator compare
BWI76_RS01350 -1.2 -1.1 NAD(P)H-flavin reductase compare
BWI76_RS18710 -1.2 -7.4 GGDEF-domain containing protein compare
BWI76_RS01200 -1.2 -1.4 diaminopimelate epimerase compare
BWI76_RS27430 -1.2 -1.1 (p)ppGpp synthetase compare
BWI76_RS09650 -1.2 -4.9 hypothetical protein compare
BWI76_RS24280 -1.2 -5.2 biopolymer transporter ExbB compare
BWI76_RS08210 -1.2 -2.1 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS08525 -1.2 -1.9 colicin transporter compare
BWI76_RS27165 -1.2 -2.1 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS18715 -1.2 -4.1 hypothetical protein compare
BWI76_RS12470 -1.2 -1.7 thiosulfate sulfurtransferase PspE compare
BWI76_RS20440 -1.2 -1.5 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare


Specific Phenotypes

For 8 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms