Experiment set8IT034 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS20995 +2.8 15.2 RNA degradosome polyphosphate kinase compare
BWI76_RS07465 +2.8 12.6 TetR family transcriptional regulator compare
BWI76_RS26470 +2.3 13.1 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS00140 +2.3 6.0 phosphate transport system regulator PhoU compare
BWI76_RS26465 +2.2 18.8 4-amino-4-deoxy-L-arabinose lipid A transferase compare
BWI76_RS26685 +2.1 11.0 glutathione-disulfide reductase compare
BWI76_RS20640 +2.1 7.7 cysteine synthase A compare
BWI76_RS26480 +2.0 17.1 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
BWI76_RS26475 +2.0 13.8 bifunctional UDP-glucuronic acid oxidase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
BWI76_RS11275 +1.9 12.7 sensor protein PhoQ compare
BWI76_RS26485 +1.8 9.8 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase compare
BWI76_RS01890 +1.8 8.8 transcriptional regulator Zur compare
BWI76_RS27675 +1.7 8.7 EmrB/QacA family drug resistance transporter compare
BWI76_RS26455 +1.6 7.4 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS26460 +1.6 7.7 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS15825 +1.5 3.7 hypothetical protein compare
BWI76_RS00865 +1.5 7.3 DNA-binding transcriptional regulator OxyR compare
BWI76_RS05235 +1.4 3.2 hypothetical protein compare
BWI76_RS12170 +1.4 1.5 hypothetical protein compare
BWI76_RS24480 +1.4 7.1 undecaprenyl-diphosphatase compare
BWI76_RS24585 +1.3 3.8 glycerol dehydrogenase compare
BWI76_RS09825 +1.2 5.4 envelope biogenesis factor ElyC compare
BWI76_RS09030 +1.2 4.3 transpeptidase compare
BWI76_RS05005 +1.2 4.4 polynucleotide adenylyltransferase compare
BWI76_RS18575 +1.1 1.8 transcriptional regulator compare
BWI76_RS01070 +1.1 5.2 thiol reductase thioredoxin compare
BWI76_RS06535 +1.1 6.1 endopeptidase La compare
BWI76_RS24915 +1.0 7.6 penicillin-binding protein activator compare
BWI76_RS22815 +1.0 7.9 hybrid sensor histidine kinase/response regulator compare
BWI76_RS22685 +1.0 3.6 hypothetical protein compare
BWI76_RS13090 +1.0 2.6 phenylacetate-CoA oxygenase subunit PaaA compare
BWI76_RS03080 +1.0 3.9 (Fe-S)-cluster assembly protein compare
BWI76_RS21565 +1.0 1.9 outer membrane protein assembly factor BamE compare
BWI76_RS05440 +0.9 5.6 hydroxyacylglutathione hydrolase compare
BWI76_RS16260 +0.9 2.8 two-component sensor histidine kinase compare
BWI76_RS17910 +0.9 4.4 hypothetical protein compare
BWI76_RS05180 +0.9 5.1 serine endoprotease DegQ compare
BWI76_RS23655 +0.9 5.1 DeoR family transcriptional regulator compare
BWI76_RS20750 +0.9 1.5 carboxysome structural protein EutK compare
BWI76_RS20970 +0.9 2.0 phosphoribosylglycinamide formyltransferase compare
BWI76_RS08330 +0.9 2.0 hypothetical protein compare
BWI76_RS24075 +0.9 3.7 glutathione synthase compare
BWI76_RS17915 +0.9 4.1 membrane protein compare
BWI76_RS18605 +0.9 1.4 oxidoreductase molybdopterin-binding protein compare
BWI76_RS23690 +0.9 2.0 putative glyoxalase/bleomycin resistance protein/dioxygenase compare
BWI76_RS20375 +0.8 1.2 membrane protein compare
BWI76_RS15975 +0.8 1.4 hypothetical protein compare
BWI76_RS12285 +0.8 2.3 hypothetical protein compare
BWI76_RS17080 +0.8 4.2 hypothetical protein compare
BWI76_RS17890 +0.8 2.2 PTS mannose transporter subunit EIIAB compare
BWI76_RS19885 +0.8 3.0 multidrug ABC transporter permease/ATP-binding protein conserved
BWI76_RS12420 +0.8 1.5 peptide ABC transporter substrate-binding protein SapA compare
BWI76_RS23325 +0.8 3.2 hypothetical protein compare
BWI76_RS20915 +0.8 4.4 peroxiredoxin compare
BWI76_RS12790 +0.8 1.7 lactate dehydrogenase compare
BWI76_RS18335 +0.8 5.1 DNA-binding response regulator compare
BWI76_RS23970 +0.8 2.9 mechanosensitive ion channel protein MscS compare
BWI76_RS16935 +0.8 1.5 shikimate dehydrogenase compare
BWI76_RS19900 +0.8 3.2 FAD:protein FMN transferase compare
BWI76_RS07995 +0.8 1.3 twin-arginine translocase subunit TatA compare
BWI76_RS20380 +0.8 1.3 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS27425 +0.8 2.4 DNA-directed RNA polymerase subunit omega compare
BWI76_RS25475 +0.8 5.5 TIGR02099 family protein compare
BWI76_RS00440 +0.8 1.6 CopG family transcriptional regulator compare
BWI76_RS21340 +0.8 2.5 SoxR reducing system protein RseC compare
BWI76_RS10345 +0.8 6.4 MFS transporter compare
BWI76_RS04850 +0.7 3.3 N-acetylmuramoyl-L-alanine amidase compare
BWI76_RS01170 +0.7 3.6 uroporphyrinogen-III C-methyltransferase compare
BWI76_RS11635 +0.7 1.3 ABC transporter compare
BWI76_RS21535 +0.7 3.7 inner membrane protein YpjD compare
BWI76_RS04600 +0.7 1.9 inner membrane protein compare
BWI76_RS24600 +0.7 1.5 dihydroxyacetone kinase compare
BWI76_RS05790 +0.7 1.6 phage DNA-binding protein compare
BWI76_RS27605 +0.7 1.6 hypothetical protein compare
BWI76_RS03295 +0.7 1.4 transposase compare
BWI76_RS11125 +0.7 1.5 metal-dependent hydrolase compare
BWI76_RS14075 +0.7 2.0 TetR family transcriptional regulator compare
BWI76_RS11150 +0.7 1.5 membrane protein compare
BWI76_RS20715 +0.7 2.1 RpoE-regulated lipoprotein compare
BWI76_RS11060 +0.7 2.0 septum formation inhibitor Maf compare
BWI76_RS00025 +0.7 0.9 hypothetical protein compare
BWI76_RS12515 +0.7 2.5 protease compare
BWI76_RS26125 +0.7 3.2 carboxypeptidase/penicillin-binding protein 1A compare
BWI76_RS10350 +0.7 4.7 EamA family transporter compare
BWI76_RS01085 +0.7 2.6 polysaccharide chain length modulation protein compare
BWI76_RS24605 +0.7 4.5 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS06335 +0.7 2.8 nucleoside-specific channel-forming protein Tsx compare
BWI76_RS21375 +0.7 0.9 autonomous glycyl radical cofactor GrcA compare
BWI76_RS21485 +0.7 4.8 DUF4154 domain-containing protein compare
BWI76_RS21325 +0.7 2.7 hypothetical protein compare
BWI76_RS08395 +0.7 1.9 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS10755 +0.7 1.4 pyrimidine utilization flavin reductase protein F compare
BWI76_RS20695 +0.7 1.6 sulfate/thiosulfate transporter permease subunit compare
BWI76_RS10530 +0.6 2.2 GntR family transcriptional regulator with compare
BWI76_RS21675 +0.6 0.5 hypothetical protein compare
BWI76_RS06785 +0.6 2.8 DNA-binding transcriptional repressor AcrR compare
BWI76_RS13250 +0.6 1.2 cytochrome b561 compare
BWI76_RS16525 +0.6 1.8 cyclopropane-fatty-acyl-phospholipid synthase compare
BWI76_RS22085 +0.6 2.2 L-valine transporter subunit YgaH compare
BWI76_RS24885 +0.6 0.8 PTS galactitol transporter subunit IIB compare
BWI76_RS05425 +0.6 2.6 EEP domain-containing protein compare
BWI76_RS23735 +0.6 2.3 sugar diacid utilization regulator compare
BWI76_RS24920 +0.6 2.3 YraN family protein compare
BWI76_RS23300 +0.6 3.8 YgdI/YgdR family lipoprotein compare
BWI76_RS13185 +0.6 2.0 MFS transporter compare
BWI76_RS26215 +0.6 3.2 glycogen-branching enzyme compare
BWI76_RS19605 +0.6 4.2 CidB/LrgB family autolysis modulator compare
BWI76_RS26095 +0.6 1.4 shikimate kinase compare
BWI76_RS05645 +0.6 2.2 fructuronate reductase compare
BWI76_RS22455 +0.6 3.4 TonB-dependent receptor compare
BWI76_RS05520 +0.6 1.8 hypothetical protein compare
BWI76_RS15980 +0.6 1.7 lysine transporter LysE compare
BWI76_RS11260 +0.6 1.6 hypothetical protein compare
BWI76_RS20225 +0.6 3.4 hypothetical protein compare
BWI76_RS26005 +0.6 1.3 glutamine amidotransferase compare
BWI76_RS26580 +0.6 2.8 universal stress protein A compare
BWI76_RS06175 +0.6 1.0 DUF188 domain-containing protein compare
BWI76_RS17765 +0.6 0.8 hypothetical protein compare
BWI76_RS21130 +0.6 1.6 Fe-S assembly protein IscX compare
BWI76_RS06120 +0.6 1.2 membrane protein compare
BWI76_RS16095 +0.6 2.3 thiamine biosynthesis protein ApbE compare
BWI76_RS15345 +0.6 2.2 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
BWI76_RS15070 +0.6 5.1 non-ribosomal peptide synthetase compare
BWI76_RS25160 +0.6 1.5 transcription elongation factor GreA compare
BWI76_RS22090 +0.6 1.7 transcriptional regulator compare
BWI76_RS25485 +0.6 1.1 septum formation protein Maf compare
BWI76_RS21490 +0.6 4.2 GGDEF domain-containing protein compare
BWI76_RS06520 +0.6 2.4 trigger factor compare
BWI76_RS18810 +0.6 2.5 nitrogenase iron protein compare
BWI76_RS23335 +0.6 2.0 GNAT family acetyltransferase compare
BWI76_RS09360 +0.6 1.6 hypothetical protein compare
BWI76_RS17405 +0.6 2.5 cation transport regulator compare
BWI76_RS19460 +0.6 1.0 lipoprotein compare
BWI76_RS23200 +0.6 2.0 propionate kinase compare
BWI76_RS26805 +0.6 1.2 cellulose biosynthesis protein BcsF compare
BWI76_RS17945 +0.6 1.1 hypothetical protein compare
BWI76_RS10920 +0.6 1.3 putative TetR family transcriptional regulator compare
BWI76_RS19100 +0.6 2.8 putative acid phosphatase compare
BWI76_RS25705 +0.6 1.5 hypothetical protein compare
BWI76_RS06915 +0.5 1.4 membrane protein compare
BWI76_RS12495 +0.5 1.3 2-Cys peroxiredoxin compare
BWI76_RS11170 +0.5 1.1 hypothetical protein compare
BWI76_RS10305 +0.5 3.7 transposase compare
BWI76_RS16970 +0.5 2.5 murein L,D-transpeptidase compare
BWI76_RS03180 +0.5 0.9 phage transcriptional regulator, AlpA compare
BWI76_RS05965 +0.5 1.7 hypothetical protein compare
BWI76_RS09520 +0.5 1.6 arginine ABC transporter ATP-binding protein ArtP compare
BWI76_RS00940 +0.5 3.8 transcriptional regulator HdfR compare
BWI76_RS07460 +0.5 1.8 hypothetical protein compare
BWI76_RS09500 +0.5 2.0 arginine ABC transporter substrate-binding protein compare
BWI76_RS00715 +0.5 1.6 two-component sensor histidine kinase compare
BWI76_RS01580 +0.5 1.6 hypothetical protein compare
BWI76_RS02445 +0.5 1.9 fumarate reductase subunit C compare
BWI76_RS00225 +0.5 2.9 16S rRNA methyltransferase G compare
BWI76_RS12340 +0.5 1.3 molecular chaperone Tir compare
BWI76_RS24945 +0.5 0.8 glutamine amidotransferase compare
BWI76_RS15080 +0.5 4.4 hypothetical protein compare
BWI76_RS18420 +0.5 3.4 DNA (cytosine-5-)-methyltransferase compare
BWI76_RS15695 +0.5 1.8 hypothetical protein compare
BWI76_RS20560 +0.5 1.3 hypothetical protein compare
BWI76_RS08980 +0.5 0.9 DNA starvation/stationary phase protection protein compare
BWI76_RS23050 +0.5 1.4 cobalt-precorrin-3B C(17)-methyltransferase compare
BWI76_RS02920 +0.5 1.7 addiction module toxin RelE compare
BWI76_RS01585 +0.5 2.0 transcriptional regulator compare
BWI76_RS19360 +0.5 2.7 glucose dehydrogenase compare
BWI76_RS16170 +0.5 3.6 amidohydrolase compare
BWI76_RS03175 +0.5 2.4 hypothetical protein compare
BWI76_RS04155 +0.5 3.1 membrane protein compare
BWI76_RS15255 +0.5 2.1 hypothetical protein compare
BWI76_RS04425 +0.5 1.7 oxaloacetate decarboxylase subunit gamma compare
BWI76_RS17075 +0.5 3.1 3-deoxy-7-phosphoheptulonate synthase compare
BWI76_RS25365 +0.5 3.6 serine endoprotease DegQ compare
BWI76_RS06435 +0.5 0.8 MFS transporter compare
BWI76_RS20065 +0.5 3.1 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
BWI76_RS05655 +0.5 1.7 hypothetical protein compare
BWI76_RS12820 +0.5 2.0 NAD-dependent phenylacetaldehyde dehydrogenase compare
BWI76_RS09100 +0.5 3.3 glutathione ABC transporter substrate-binding protein GsiB compare
BWI76_RS21820 +0.5 2.1 colicin D compare
BWI76_RS13415 +0.5 1.6 spermidine/putrescine ABC transporter permease compare
BWI76_RS17900 +0.5 1.5 PTS mannose transporter subunit IID compare
BWI76_RS24225 +0.5 2.3 hypothetical protein compare
BWI76_RS07600 +0.5 2.5 aspartate aminotransferase family protein compare
BWI76_RS00425 +0.5 1.0 D-tyrosyl-tRNA(Tyr) deacylase compare
BWI76_RS04900 +0.5 3.0 DUF2950 domain-containing protein compare
BWI76_RS15340 +0.5 2.6 urea ABC transporter substrate-binding protein compare
BWI76_RS15685 +0.5 1.4 hypothetical protein compare
BWI76_RS16515 +0.5 1.2 LysR family transcriptional regulator compare
BWI76_RS16510 +0.5 2.0 transcriptional repressor PurR compare
BWI76_RS22135 +0.5 1.1 transport-associated protein compare
BWI76_RS04270 +0.5 1.6 transaldolase compare
BWI76_RS16195 +0.5 1.2 hypothetical protein compare
BWI76_RS24035 +0.5 1.2 hypothetical protein compare
BWI76_RS11055 +0.5 2.0 hydrolase compare
BWI76_RS10855 +0.5 1.7 RND family efflux transporter MFP subunit compare
BWI76_RS08445 +0.5 1.9 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
BWI76_RS23470 +0.5 3.9 hypothetical protein compare
BWI76_RS10295 +0.5 1.8 short chain dehydrogenase/reductase family oxidoreductase compare
BWI76_RS15185 +0.5 2.3 N-acetyltransferase compare
BWI76_RS20310 +0.5 2.0 hypothetical protein compare
BWI76_RS26080 +0.5 1.9 cell division protein DamX compare


Specific Phenotypes

For 8 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms