Experiment set8IT034 for Burkholderia phytofirmans PsJN

Compare to:

D-Glucose 20 mM carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17680 -6.4 -5.4 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS17685 -6.1 -9.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS08955 -5.7 -3.9 homoserine dehydrogenase compare
BPHYT_RS03150 -5.5 -15.8 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS15920 -5.4 -14.7 argininosuccinate synthase compare
BPHYT_RS17400 -5.4 -6.6 anthranilate phosphoribosyltransferase compare
BPHYT_RS33835 -5.2 -11.1 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS17405 -5.2 -1.7 indole-3-glycerol phosphate synthase compare
BPHYT_RS14845 -5.1 -3.5 cysteine synthase compare
BPHYT_RS03645 -5.0 -3.2 tRNA dimethylallyltransferase compare
BPHYT_RS33880 -5.0 -7.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS33645 -4.9 -5.6 homoserine kinase compare
BPHYT_RS14895 -4.8 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS33915 -4.8 -7.6 isopropylmalate isomerase compare
BPHYT_RS09500 -4.8 -7.7 glucose-6-phosphate isomerase compare
BPHYT_RS17690 -4.7 -12.6 imidazole glycerol phosphate synthase compare
BPHYT_RS06555 -4.7 -8.4 ketol-acid reductoisomerase compare
BPHYT_RS15915 -4.7 -12.8 ornithine carbamoyltransferase compare
BPHYT_RS16270 -4.7 -4.5 phosphoglycerate kinase compare
BPHYT_RS14190 -4.7 -11.0 carbamoyl phosphate synthase large subunit compare
BPHYT_RS18320 -4.7 -12.8 orotate phosphoribosyltransferase compare
BPHYT_RS33875 -4.6 -8.7 tryptophan synthase subunit alpha compare
BPHYT_RS06545 -4.6 -11.6 acetolactate synthase compare
BPHYT_RS01595 -4.6 -12.0 homoserine O-acetyltransferase compare
BPHYT_RS14910 -4.6 -9.8 chorismate mutase compare
BPHYT_RS33900 -4.5 -10.8 3-isopropylmalate dehydrogenase compare
BPHYT_RS17855 -4.5 -14.0 glutamate synthase compare
BPHYT_RS09515 -4.5 -3.1 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS08960 -4.4 -2.4 threonine synthase compare
BPHYT_RS13705 -4.4 -3.8 chorismate synthase compare
BPHYT_RS04725 -4.3 -8.0 sulfite reductase compare
BPHYT_RS14915 -4.3 -6.8 phosphoserine aminotransferase compare
BPHYT_RS33865 -4.3 -10.4 tryptophan synthase alpha chain compare
BPHYT_RS17700 -4.3 -4.5 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS16905 -4.3 -5.2 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS17390 -4.3 -14.9 anthranilate synthase subunit I compare
BPHYT_RS17890 -4.3 -2.3 shikimate kinase compare
BPHYT_RS05225 -4.2 -9.8 phosphoenolpyruvate carboxylase compare
BPHYT_RS14195 -4.2 -4.0 carbamoyl phosphate synthase small subunit compare
BPHYT_RS17670 -4.2 -4.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS16840 -4.1 -2.9 transketolase compare
BPHYT_RS06900 -4.1 -6.5 aspartate aminotransferase compare
BPHYT_RS17675 -4.0 -2.6 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS04740 -4.0 -6.5 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS33840 -4.0 -8.5 amidophosphoribosyltransferase compare
BPHYT_RS04955 -3.9 -2.5 methionyl-tRNA synthetase compare
BPHYT_RS03640 -3.9 -3.7 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS04720 -3.9 -6.3 transcriptional regulator compare
BPHYT_RS12845 -3.9 -16.4 ATPase compare
BPHYT_RS02590 -3.8 -6.0 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS05010 -3.7 -4.8 RpiR family transcriptional regulator compare
BPHYT_RS17885 -3.7 -6.3 3-dehydroquinate synthase compare
BPHYT_RS12530 -3.7 -4.6 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS16835 -3.7 -4.8 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS17715 -3.6 -9.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS17395 -3.6 -2.8 anthranilate synthase subunit II compare
BPHYT_RS01590 -3.5 -5.5 methionine biosynthesis protein MetW compare
BPHYT_RS06405 -3.4 -6.5 phosphoribosylamine--glycine ligase compare
BPHYT_RS16735 -3.4 -6.2 phosphogluconate dehydratase compare
BPHYT_RS14865 -3.2 -2.1 UDP-glucose 6-dehydrogenase compare
BPHYT_RS06045 -3.2 -7.9 transaldolase compare
BPHYT_RS10100 -3.1 -6.2 dihydroxy-acid dehydratase compare
BPHYT_RS03535 -3.1 -8.0 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS12465 -3.1 -3.3 inositol monophosphatase compare
BPHYT_RS02610 -3.0 -5.0 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS06685 -2.8 -2.2 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS04730 -2.8 -2.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS16255 -2.8 -4.9 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS30365 -2.7 -1.2 beta-lactamase compare
BPHYT_RS16245 -2.7 -4.4 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS16675 -2.7 -1.8 dihydroorotase compare
BPHYT_RS05020 -2.7 -7.0 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS20070 -2.6 -5.0 hypothetical protein compare
BPHYT_RS18705 -2.6 -2.0 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS05960 -2.5 -7.3 endoribonuclease L-PSP compare
BPHYT_RS04965 -2.5 -7.6 ATP-binding protein compare
BPHYT_RS13605 -2.5 -1.1 tRNA-Pro compare
BPHYT_RS08850 -2.5 -1.9 transcriptional regulator compare
BPHYT_RS33920 -2.4 -7.7 type II citrate synthase compare
BPHYT_RS05040 -2.4 -3.3 sugar ABC transporter ATPase compare
BPHYT_RS23230 -2.3 -1.0 histidine kinase compare
BPHYT_RS13220 -2.3 -5.6 phosphomethylpyrimidine synthase compare
BPHYT_RS14900 -2.3 -2.8 prephenate dehydrogenase compare
BPHYT_RS04745 -2.3 -3.3 sulfate adenylyltransferase compare
BPHYT_RS06175 -2.2 -5.8 LPS biosynthesis compare
BPHYT_RS05025 -2.2 -5.6 sugar ABC transporter substrate-binding protein compare
BPHYT_RS17945 -2.1 -2.3 cytochrome C biogenesis protein compare
BPHYT_RS05035 -2.0 -6.7 sugar ABC transporter permease compare
BPHYT_RS12840 -2.0 -3.2 pyruvate dehydrogenase compare
BPHYT_RS03725 -1.9 -1.0 serine hydroxymethyltransferase compare
BPHYT_RS15670 -1.9 -8.7 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS26025 -1.9 -0.8 hypothetical protein compare
BPHYT_RS02905 -1.9 -13.7 RNA polymerase subunit sigma-54 compare
BPHYT_RS05030 -1.9 -3.8 sugar ABC transporter permease compare
BPHYT_RS16250 -1.9 -1.5 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS03625 -1.9 -8.0 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS18340 -1.9 -2.1 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS12150 -1.8 -10.6 PII uridylyl-transferase compare
BPHYT_RS20840 -1.8 -2.6 beta-lactamase compare
BPHYT_RS14060 -1.8 -2.5 peptidase M23 compare
BPHYT_RS04335 -1.8 -1.5 membrane protein compare
BPHYT_RS28705 -1.8 -1.5 IclR family transcriptional regulator compare
BPHYT_RS03480 -1.8 -8.2 ferritin compare
BPHYT_RS06190 -1.8 -4.0 heptosyltransferase compare
BPHYT_RS09315 -1.8 -1.2 chemotaxis protein CheY compare
BPHYT_RS26925 -1.7 -2.3 NIPSNAP family containing protein compare
BPHYT_RS15710 -1.7 -1.6 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS06195 -1.7 -2.9 membrane protein compare
BPHYT_RS08565 -1.7 -1.3 dihydroorotate dehydrogenase compare
BPHYT_RS08150 -1.7 -1.3 membrane protein compare
BPHYT_RS09145 -1.7 -5.9 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS06350 -1.6 -2.0 chemotaxis protein CheY compare
BPHYT_RS36545 -1.6 -4.2 Resolvase helix-turn-helix domain-containing protein compare
BPHYT_RS35385 -1.6 -1.9 GntR family transcriptional regulator compare
BPHYT_RS15650 -1.6 -8.7 quinolinate synthetase compare
BPHYT_RS02570 -1.6 -5.4 phosphocarrier protein HPr compare
BPHYT_RS10645 -1.6 -1.4 cyanate hydratase compare
BPHYT_RS17520 -1.5 -3.4 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS10095 -1.5 -1.5 integrase compare
BPHYT_RS08950 -1.5 -4.7 aminotransferase compare
BPHYT_RS32470 -1.4 -2.1 membrane protein compare
BPHYT_RS20805 -1.4 -2.6 LacI family transcriptional regulator compare
BPHYT_RS31255 -1.4 -1.4 cytochrome B561 compare
BPHYT_RS17905 -1.4 -1.6 fimbrial assembly family protein compare
BPHYT_RS19785 -1.4 -1.7 chemotaxis protein CheY compare
BPHYT_RS12985 -1.4 -0.8 amino acid acetyltransferase compare
BPHYT_RS16975 -1.4 -5.2 shikimate 5-dehydrogenase compare
BPHYT_RS12990 -1.4 -2.3 iron transporter compare
BPHYT_RS26775 -1.4 -1.6 chemotaxis protein CheB compare
BPHYT_RS05730 -1.4 -5.7 hypothetical protein compare
BPHYT_RS17380 -1.3 -7.7 ribulose-phosphate 3-epimerase compare
BPHYT_RS15645 -1.3 -5.5 nicotinate-nucleotide pyrophosphorylase compare
BPHYT_RS13200 -1.3 -1.4 molybdopterin binding oxidoreductase compare
BPHYT_RS08525 -1.3 -1.0 SAM-dependent methyltransferase compare
BPHYT_RS09895 -1.3 -1.3 LysR family transcriptional regulator compare
BPHYT_RS00295 -1.3 -2.1 hypothetical protein compare
BPHYT_RS02650 -1.3 -1.3 membrane protein compare
BPHYT_RS26415 -1.3 -2.2 glutathione S-transferase compare
BPHYT_RS09160 -1.3 -3.2 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS04560 -1.2 -1.8 Hcp1 family type VI secretion system effector compare
BPHYT_RS12510 -1.2 -1.9 RNA-binding protein compare
BPHYT_RS04750 -1.2 -2.0 uroporphyrin-III C-methyltransferase compare
BPHYT_RS10850 -1.2 -1.4 LysR family transcriptional regulator compare
BPHYT_RS03730 -1.2 -1.9 transcriptional repressor NrdR compare
BPHYT_RS02975 -1.2 -1.6 membrane protein compare
BPHYT_RS29820 -1.2 -1.9 hypothetical protein compare
BPHYT_RS15640 -1.2 -7.9 L-aspartate oxidase compare
BPHYT_RS28805 -1.2 -2.4 glyoxalase compare
BPHYT_RS23035 -1.2 -2.4 hypothetical protein compare
BPHYT_RS22455 -1.2 -1.0 phosphonate ABC transporter substrate-binding protein compare
BPHYT_RS35205 -1.2 -2.4 hypothetical protein compare
BPHYT_RS14400 -1.2 -2.0 anti-sigma factor compare
BPHYT_RS27175 -1.2 -1.0 DNA-binding protein compare
BPHYT_RS14855 -1.2 -1.2 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS06375 -1.1 -3.0 ribonuclease compare
BPHYT_RS14920 -1.1 -1.3 hypothetical protein compare
BPHYT_RS09690 -1.1 -1.0 phosphate starvation-inducible protein PsiF compare
BPHYT_RS02985 -1.1 -2.3 MaoC family dehydratase compare
BPHYT_RS02710 -1.1 -1.0 hypothetical protein compare
BPHYT_RS01180 -1.1 -2.4 AraC family transcriptional regulator compare
BPHYT_RS04920 -1.1 -1.8 aspartate 1-decarboxylase compare
BPHYT_RS06410 -1.1 -1.3 transcriptional regulator compare
BPHYT_RS28575 -1.1 -0.9 transcriptional regulator compare
BPHYT_RS35955 -1.1 -0.8 hypothetical protein compare
BPHYT_RS17100 -1.1 -4.5 RNA pyrophosphohydrolase compare
BPHYT_RS33385 -1.1 -1.4 major facilitator superfamily protein compare
BPHYT_RS26375 -1.1 -2.0 ATPase AAA compare
BPHYT_RS36385 -1.1 -0.6 TetR family transcriptional regulator compare
BPHYT_RS31050 -1.1 -0.9 epimerase compare
BPHYT_RS02285 -1.1 -3.8 cell division protein compare
BPHYT_RS35230 -1.0 -1.1 type 11 methyltransferase compare
BPHYT_RS26955 -1.0 -1.0 succinylglutamate desuccinylase compare
BPHYT_RS31385 -1.0 -1.5 ketoacyl reductase compare
BPHYT_RS12935 -1.0 -5.2 chemotaxis protein CheY compare
BPHYT_RS12940 -1.0 -3.4 signal transduction histidine kinase compare
BPHYT_RS22530 -1.0 -1.4 N5,N10-methylene tetrahydromethanopterin reductase compare
BPHYT_RS20505 -1.0 -1.3 carboxymethylenebutenolidase compare
BPHYT_RS24965 -1.0 -1.4 hypothetical protein compare
BPHYT_RS12280 -1.0 -1.3 RNA helicase compare
BPHYT_RS11920 -1.0 -1.9 membrane protein compare
BPHYT_RS28870 -1.0 -1.8 MarR family transcriptional regulator compare
BPHYT_RS25845 -1.0 -0.9 RND transporter MFP subunit compare
BPHYT_RS26555 -1.0 -1.9 multidrug MFS transporter compare
BPHYT_RS23325 -1.0 -2.1 ribonuclease compare
BPHYT_RS01965 -1.0 -1.2 tRNA-Ala compare
BPHYT_RS15320 -1.0 -1.4 hypothetical protein compare
BPHYT_RS02860 -1.0 -0.9 membrane protein compare
BPHYT_RS35245 -1.0 -1.8 hypothetical protein compare
BPHYT_RS28930 -1.0 -0.7 chromosome partitioning protein ParA compare
BPHYT_RS09355 -1.0 -1.7 LysR family transcriptional regulator compare
BPHYT_RS06610 -1.0 -0.6 triosephosphate isomerase compare
BPHYT_RS36435 -1.0 -1.4 hypothetical protein compare
BPHYT_RS05650 -1.0 -1.2 hypothetical protein compare
BPHYT_RS03110 -1.0 -2.1 MarR family transcriptional regulator compare
BPHYT_RS26390 -1.0 -0.7 antibiotic resistance protein compare
BPHYT_RS13390 -1.0 -0.8 IclR family transcriptional regulator compare
BPHYT_RS03280 -1.0 -1.2 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS34085 -1.0 -1.5 polyamine ABC transporter permease compare
BPHYT_RS01730 -1.0 -1.8 serine/threonine protein kinase compare
BPHYT_RS20665 -1.0 -1.0 LysR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in carbon source experiments

For carbon source D-Glucose across organisms