Experiment set8IT033 for Pseudomonas fluorescens FW300-N2E2

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Trisodium citrate dihydrate carbon source

Genes with specific phenotypes:

  gene name fitness t score description  
Pf6N2E2_5616 -3.2 -7.5 outer membrane component of uptake system, probably for ferrous iron (from data) conserved
Pf6N2E2_5618 -3.0 -10.6 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites conserved
Pf6N2E2_4447 -3.0 -14.7 Cytochrome c family protein compare
Pf6N2E2_5617 -2.8 -8.7 Iron-regulated protein A precursor compare
Pf6N2E2_2853 -2.6 -9.7 Iron-regulated protein A precursor conserved
Pf6N2E2_4138 -2.6 -14.1 Uncharacterized transporter, similarity to citrate transporter conserved
Pf6N2E2_3160 -2.5 -7.9 Multicopper oxidase conserved
Pf6N2E2_5305 -2.2 -14.7 Fe(3+) dicitrate transport protein FecA (from data) conserved
Pf6N2E2_5307 -2.2 -6.4 FIG006045: Sigma factor, ECF subfamily conserved
Pf6N2E2_2914 -2.1 -8.6 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) (from data) compare
Pf6N2E2_2834 -2.1 -5.1 Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3) compare
Pf6N2E2_2839 -2.0 -9.7 Pca regulon regulatory protein PcaR compare
Pf6N2E2_2913 -2.0 -7.9 Transcriptional regulator PobR, AraC family compare
Pf6N2E2_2833 -1.7 -5.2 Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) compare
Pf6N2E2_2837 -1.6 -7.6 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6); Glutaconate CoA-transferase subunit A (EC 2.8.3.12) compare
Pf6N2E2_2838 -1.5 -6.5 4-hydroxybenzoate transporter compare
Pf6N2E2_3335 -1.1 -8.0 Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB compare
Pf6N2E2_5306 -1.0 -5.5 Iron siderophore sensor protein compare
Pf6N2E2_3073 +1.1 7.1 N-succinyl-L,L-diaminopimelate aminotransferase alternative (EC 2.6.1.17) conserved
Pf6N2E2_3314 +1.2 8.5 Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2) compare
Pf6N2E2_2765 +1.5 6.2 Tricarboxylate transport transcriptional regulator TctD conserved
Pf6N2E2_2768 +1.6 12.4 Tricarboxylate transport protein TctC conserved
Pf6N2E2_2764 +1.7 12.9 Tricarboxylate transport sensor protein TctE conserved
Pf6N2E2_2769 +3.7 21.6 Tricarboxylate transport protein TctB conserved
Pf6N2E2_2770 +3.8 31.0 Tricarboxylate transport membrane protein TctA conserved


Specific phenotypes for carbon source Trisodium citrate dihydrate across organisms