Experiment set8IT032 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS18605 +1.3 1.7 oxidoreductase molybdopterin-binding protein compare
BWI76_RS21340 +1.3 1.1 SoxR reducing system protein RseC compare
BWI76_RS15975 +1.1 1.6 hypothetical protein compare
BWI76_RS06465 +1.0 1.7 IclR family transcriptional regulator compare
BWI76_RS01885 +1.0 1.5 CsbD family protein compare
BWI76_RS11820 +1.0 1.9 short-chain dehydrogenase/reductase SDR compare
BWI76_RS17470 +1.0 3.5 MerR family transcriptional regulator compare
BWI76_RS26405 +1.0 1.7 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS07725 +1.0 1.6 iron-enterobactin transporter permease compare
BWI76_RS27875 +1.0 1.0 membrane protein compare
BWI76_RS19695 +0.9 2.6 membrane protein compare
BWI76_RS10575 +0.9 2.1 polar amino acid ABC transporter permease compare
BWI76_RS19935 +0.9 2.0 hypothetical protein compare
BWI76_RS12170 +0.9 2.5 hypothetical protein compare
BWI76_RS03595 +0.9 1.3 ethanolamine utilization protein EutM compare
BWI76_RS10730 +0.9 2.8 bifunctional glucose-1-phosphatase/inositol phosphatase compare
BWI76_RS16000 +0.9 1.5 multidrug transporter subunit MdtI compare
BWI76_RS02745 +0.9 1.4 hypothetical protein compare
BWI76_RS18335 +0.9 5.5 DNA-binding response regulator compare
BWI76_RS18780 +0.9 2.3 D-alanyl-D-alanine carboxypeptidase compare
BWI76_RS21220 +0.8 3.0 membrane protein compare
BWI76_RS14835 +0.8 1.6 hypothetical protein compare
BWI76_RS02090 +0.8 1.2 membrane protein compare
BWI76_RS14320 +0.8 1.3 hypothetical protein compare
BWI76_RS11435 +0.8 1.6 hypothetical protein compare
BWI76_RS26660 +0.8 2.7 transcription elongation factor GreB compare
BWI76_RS03080 +0.8 2.0 (Fe-S)-cluster assembly protein compare
BWI76_RS23895 +0.8 1.2 Xaa-Pro aminopeptidase compare
BWI76_RS03015 +0.8 2.9 RNase E inhibitor protein compare
BWI76_RS03665 +0.8 1.9 ABC transporter ATP-binding protein compare
BWI76_RS12855 +0.8 1.6 enamine deaminase RidA compare
BWI76_RS16920 +0.8 1.4 3-(2,3-dihydroxyphenyl)propionate dioxygenase compare
BWI76_RS19495 +0.8 1.2 ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein compare
BWI76_RS14980 +0.8 1.6 hypothetical protein compare
BWI76_RS25285 +0.8 1.2 HPr family phosphocarrier protein compare
BWI76_RS18770 +0.8 1.1 DNA gyrase inhibitor compare
BWI76_RS11060 +0.8 1.8 septum formation inhibitor Maf compare
BWI76_RS19325 +0.8 1.2 mandelate racemase compare
BWI76_RS17300 +0.8 1.6 tRNA-Tyr compare
BWI76_RS00730 +0.8 2.5 cation-efflux pump FieF compare
BWI76_RS06190 +0.7 1.5 hypothetical protein compare
BWI76_RS26645 +0.7 5.5 ferrous iron transporter B compare
BWI76_RS23560 +0.7 2.5 hypothetical protein compare
BWI76_RS09320 +0.7 2.0 P2 phage tail completion protein R compare
BWI76_RS18090 +0.7 2.4 phosphoribosylglycinamide formyltransferase 2 compare
BWI76_RS26760 +0.7 2.3 C4-dicarboxylate transport protein DctA (from data) compare
BWI76_RS22815 +0.7 4.5 hybrid sensor histidine kinase/response regulator compare
BWI76_RS23470 +0.7 5.4 hypothetical protein compare
BWI76_RS01775 +0.7 1.0 hypothetical protein compare
BWI76_RS06475 +0.7 1.2 protoheme IX farnesyltransferase compare
BWI76_RS14390 +0.7 1.7 hypothetical protein compare
BWI76_RS15295 +0.7 4.0 MDR efflux pump AcrAB transcriptional activator MarA compare
BWI76_RS01905 +0.7 1.8 envelope stress response protein PspG compare
BWI76_RS18745 +0.7 2.3 adenosylhomocysteinase compare
BWI76_RS08405 +0.7 1.3 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS24575 +0.7 0.9 hypothetical protein compare
BWI76_RS06905 +0.7 3.6 Cu+ exporting ATPase compare
BWI76_RS21870 +0.7 2.7 hypothetical protein compare
BWI76_RS18350 +0.7 1.9 L-cystine ABC transporter ATP-binding protein YecC compare
BWI76_RS18230 +0.7 2.0 trehalose-6-phosphate synthase compare
BWI76_RS11360 +0.7 2.1 L-asparaginase compare
BWI76_RS06935 +0.7 1.8 co-chaperone YbbN compare
BWI76_RS14935 +0.7 1.1 NIPSNAP family containing protein compare
BWI76_RS22640 +0.7 0.9 hypothetical protein compare
BWI76_RS22850 +0.7 1.5 tRNA pseudouridine synthase TruC compare
BWI76_RS06790 +0.7 5.0 mechanosensitive channel MscK compare
BWI76_RS24660 +0.7 2.3 autoinducer 2 ABC transporter ATP-binding protein LsrA compare
BWI76_RS20720 +0.7 1.1 hypothetical protein compare
BWI76_RS14540 +0.7 2.9 yersiniabactin biosynthetic protein YbtU compare
BWI76_RS13330 +0.7 1.3 tellurite resistance methyltransferase TehB compare
BWI76_RS23505 +0.7 5.3 ferrous iron transporter B compare
BWI76_RS17420 +0.7 1.6 hypothetical protein compare
BWI76_RS22855 +0.6 1.5 hypothetical protein compare
BWI76_RS27865 +0.6 1.6 hypothetical protein compare
BWI76_RS04060 +0.6 1.9 hypothetical protein compare
BWI76_RS20145 +0.6 1.2 NADH-quinone oxidoreductase subunit K compare
BWI76_RS07705 +0.6 1.9 enterochelin esterase compare
BWI76_RS23580 +0.6 1.2 hypothetical protein compare
BWI76_RS21810 +0.6 0.9 universal stress protein compare
BWI76_RS11465 +0.6 3.1 hypothetical protein compare
BWI76_RS13775 +0.6 1.9 putative FMN-dependent luciferase-like monooxygenase compare
BWI76_RS24940 +0.6 2.3 hypothetical protein compare
BWI76_RS17185 +0.6 2.9 fructosamine kinase family protein compare
BWI76_RS22840 +0.6 1.4 transposase compare
BWI76_RS26805 +0.6 1.4 cellulose biosynthesis protein BcsF compare
BWI76_RS25705 +0.6 1.8 hypothetical protein compare
BWI76_RS17330 +0.6 2.4 nitrate reductase subunit beta compare
BWI76_RS16425 +0.6 1.2 hypothetical protein compare
BWI76_RS22365 +0.6 1.9 hydrogenase expression/formation protein HypE compare
BWI76_RS26115 +0.6 2.7 hypothetical protein compare
BWI76_RS10920 +0.6 2.2 putative TetR family transcriptional regulator compare
BWI76_RS08315 +0.6 1.6 K+-transporting ATPase subunit B compare
BWI76_RS03800 +0.6 1.4 hypothetical protein compare
BWI76_RS16690 +0.6 1.9 peptide ABC transporter permease compare
BWI76_RS18125 +0.6 2.6 murein DD-endopeptidase MepM compare
BWI76_RS26755 +0.6 2.7 peptidase M16 compare
BWI76_RS20155 +0.6 1.4 NADH-quinone oxidoreductase subunit I compare
BWI76_RS22120 +0.6 5.3 glutamate--cysteine ligase compare
BWI76_RS15920 +0.6 1.1 hypothetical protein compare
BWI76_RS09115 +0.6 1.1 30S ribosomal protein S12 methylthiotransferase RimO compare
BWI76_RS11780 +0.6 1.6 2-deoxyglucose-6-phosphatase compare
BWI76_RS16815 +0.6 1.3 periplasmic binding protein compare
BWI76_RS16335 +0.6 1.2 division septum protein Blr compare
BWI76_RS11635 +0.6 1.0 ABC transporter compare
BWI76_RS21680 +0.6 1.1 antitoxin of the YeeV-YeeU toxin-antitoxin system compare
BWI76_RS11365 +0.6 1.4 iron ABC transporter compare
BWI76_RS12345 +0.6 1.8 nitrite transporter compare
BWI76_RS10040 +0.6 1.3 heat-shock protein HspQ compare
BWI76_RS08260 +0.6 1.4 LysR family transcriptional regulator compare
BWI76_RS17400 +0.6 1.0 transporter compare
BWI76_RS21895 +0.6 2.6 amino acid ABC transport system periplasmic amino acid-binding component compare
BWI76_RS19525 +0.6 2.5 D-alanyl-D-alanine endopeptidase compare
BWI76_RS11675 +0.6 1.8 arginine N-succinyltransferase compare
BWI76_RS19550 +0.6 2.8 phospho-cellobiase compare
BWI76_RS17965 +0.6 1.6 MFS transporter compare
BWI76_RS19560 +0.6 1.8 beta-1,4-xylanase compare
BWI76_RS01700 +0.6 2.9 dipeptidase E compare
BWI76_RS24945 +0.6 0.8 glutamine amidotransferase compare
BWI76_RS16240 +0.6 1.4 anti-adapter protein IraM compare
BWI76_RS26520 +0.6 1.5 nickel import ATP-binding protein NikE compare
BWI76_RS00795 +0.6 0.9 carboxymuconolactone decarboxylase compare
BWI76_RS06290 +0.6 1.4 ACP phosphodiesterase compare
BWI76_RS06980 +0.6 2.0 ureidoglycolate lyase compare
BWI76_RS24295 +0.6 1.4 AraC family transcriptional regulator compare
BWI76_RS01065 +0.6 1.8 ATP-dependent RNA helicase RhlB compare
BWI76_RS18410 +0.6 1.8 drug/metabolite exporter YedA compare
BWI76_RS15745 +0.6 1.6 hypothetical protein compare
BWI76_RS09825 +0.6 2.3 envelope biogenesis factor ElyC compare
BWI76_RS06540 +0.6 2.0 DNA-binding protein HU-beta compare
BWI76_RS09975 +0.6 2.0 cell division inhibitor SulA compare
BWI76_RS09940 +0.6 1.5 paraquat-inducible protein B compare
BWI76_RS11260 +0.6 1.3 hypothetical protein compare
BWI76_RS04055 +0.6 4.9 GGDEF domain-containing protein compare
BWI76_RS17860 +0.6 1.3 YoaH family protein compare
BWI76_RS20180 +0.6 2.9 NADH-quinone oxidoreductase subunit C/D compare
BWI76_RS06055 +0.6 2.7 MASE1 sensor histidine kinase compare
BWI76_RS08745 +0.6 1.3 proline-specific permease compare
BWI76_RS10330 +0.6 1.9 TetR family transcriptional regulator compare
BWI76_RS16270 +0.6 3.8 fumarate hydratase, class II compare
BWI76_RS26470 +0.6 2.1 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS26650 +0.6 3.1 iron transporter compare
BWI76_RS06520 +0.5 2.1 trigger factor compare
BWI76_RS16250 +0.5 3.8 DNA-binding response regulator compare
BWI76_RS15410 +0.5 1.9 N-acetyltransferase compare
BWI76_RS16900 +0.5 0.9 4-hydroxy-2-oxovalerate aldolase compare
BWI76_RS04560 +0.5 1.6 holo-ACP synthase CitX compare
BWI76_RS11335 +0.5 0.9 tautomerase compare
BWI76_RS20160 +0.5 1.4 NADH-quinone oxidoreductase subunit H compare
BWI76_RS11610 +0.5 1.5 glutamate dehydrogenase compare
BWI76_RS15190 +0.5 2.9 GGDEF domain-containing protein compare
BWI76_RS06735 +0.5 1.1 50S ribosomal protein L31 compare
BWI76_RS12620 +0.5 1.7 2-nitropropane dioxygenase compare
BWI76_RS06570 +0.5 2.1 thiamin pyrimidine pyrophosphate hydrolase compare
BWI76_RS18240 +0.5 0.8 L-arabinose ABC transporter permease AraH compare
BWI76_RS23500 +0.5 4.4 hypothetical protein compare
BWI76_RS19530 +0.5 1.3 YIP1 family protein compare
BWI76_RS21505 +0.5 0.8 hypothetical protein compare
BWI76_RS13185 +0.5 2.2 MFS transporter compare
BWI76_RS15950 +0.5 1.2 dethiobiotin synthase compare
BWI76_RS06080 +0.5 1.6 taurine dioxygenase compare
BWI76_RS02420 +0.5 1.5 entericidin EcnAB compare
BWI76_RS08985 +0.5 1.8 threonine/homoserine exporter RhtA compare
BWI76_RS09455 +0.5 1.4 YbjN domain-containing protein compare
BWI76_RS20065 +0.5 1.9 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
BWI76_RS02820 +0.5 1.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
BWI76_RS02865 +0.5 2.3 hypothetical protein compare
BWI76_RS12735 +0.5 2.1 phage repressor protein compare
BWI76_RS21485 +0.5 3.5 DUF4154 domain-containing protein compare
BWI76_RS18370 +0.5 2.6 alpha-amylase compare
BWI76_RS17645 +0.5 1.4 hypothetical protein compare
BWI76_RS07740 +0.5 0.8 Fe2+-enterobactin ABC transporter substrate-binding protein compare
BWI76_RS04260 +0.5 2.2 peroxide stress protein YaaA compare
BWI76_RS10950 +0.5 1.9 MFS transporter compare
BWI76_RS26810 +0.5 2.3 cellulose biosynthesis protein BcsG compare
BWI76_RS20025 +0.5 2.4 HAMP domain-containing histidine kinase compare
BWI76_RS02275 +0.5 2.5 TetR family transcriptional regulator compare
BWI76_RS14010 +0.5 1.5 SDR family oxidoreductase compare
BWI76_RS08515 +0.5 1.2 acyl-CoA thioesterase YbgC compare
BWI76_RS14740 +0.5 2.0 LysR family transcriptional regulator compare
BWI76_RS26330 +0.5 1.4 ABC transporter ATP-binding protein compare
BWI76_RS15825 +0.5 0.9 hypothetical protein compare
BWI76_RS00270 +0.5 1.7 D-ribose pyranase (EC 5.4.99.62) (from data) compare
BWI76_RS09315 +0.5 0.7 hypothetical protein compare
BWI76_RS13155 +0.5 0.9 hypothetical protein compare
BWI76_RS24110 +0.5 1.2 YggU family protein compare
BWI76_RS03660 +0.5 1.0 hypothetical protein compare
BWI76_RS06635 +0.5 1.5 methylated-DNA--protein-cysteine methyltransferase compare
BWI76_RS10385 +0.5 1.6 MmgE/PrpD family protein compare
BWI76_RS23940 +0.5 2.6 ATPase/protein kinase compare
BWI76_RS04605 +0.5 0.8 thiamine ABC transporter ATP-binding protein compare
BWI76_RS06320 +0.5 1.1 Xaa-Pro aminopeptidase compare
BWI76_RS01380 +0.5 2.0 YigZ family protein compare
BWI76_RS15285 +0.5 2.2 stress protection protein MarC compare
BWI76_RS14970 +0.5 1.0 pyrroline-5-carboxylate reductase compare
BWI76_RS20730 +0.5 1.0 hypothetical protein compare
BWI76_RS12790 +0.5 0.8 lactate dehydrogenase compare
BWI76_RS11460 +0.5 1.5 DUF441 family protein compare
BWI76_RS18575 +0.5 0.9 transcriptional regulator compare
BWI76_RS01710 +0.5 2.1 DNA gyrase inhibitor compare
BWI76_RS15150 +0.5 0.6 outer membrane efflux protein compare


Specific Phenotypes

For 5 genes in this experiment

For supernatant Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms