Experiment set8IT031 for Pseudomonas fluorescens FW300-N2E2

Compare to:

L-Asparagine carbon source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4597 -6.7 -4.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3248 -6.3 -6.2 Probable transmembrane protein compare
Pf6N2E2_64 -6.1 -4.2 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_77 -5.9 -4.1 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_4825 -5.9 -8.1 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_4596 -5.8 -8.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3782 -5.8 -4.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_71 -5.5 -6.5 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3253 -5.5 -6.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3630 -5.4 -8.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3842 -5.2 -6.2 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_4047 -5.2 -7.1 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_5175 -5.2 -15.2 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_3610 -4.9 -8.1 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5014 -4.8 -2.2 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4564 -4.7 -10.4 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_4087 -4.7 -12.9 L-asparaginase (EC 3.5.1.1) (from data) conserved
Pf6N2E2_4826 -4.7 -10.0 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3783 -4.7 -6.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_5176 -4.7 -11.9 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_3252 -4.6 -10.9 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2073 -4.5 -6.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_3839 -4.5 -6.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3940 -4.4 -14.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_66 -4.4 -12.3 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3841 -4.4 -6.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_4048 -4.3 -7.8 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_2186 -4.1 -8.9 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf6N2E2_2753 -4.0 -2.8 HtrA protease/chaperone protein compare
Pf6N2E2_5177 -4.0 -11.6 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_4086 -3.9 -18.3 sodium/alanine transporter conserved
Pf6N2E2_5316 -3.8 -2.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2277 -3.7 -4.3 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_4638 -3.7 -3.6 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_302 -3.6 -8.1 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3932 -3.4 -4.0 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_1400 -3.2 -13.3 Sensory box histidine kinase/response regulator compare
Pf6N2E2_5006 -3.1 -8.8 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5156 -3.0 -4.1 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_1381 -3.0 -9.3 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_1402 -3.0 -9.8 hypothetical protein compare
Pf6N2E2_2473 -2.9 -2.2 Major outer membrane lipoprotein I compare
Pf6N2E2_5579 -2.8 -7.7 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_3251 -2.8 -9.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_5242 -2.6 -3.0 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_63 -2.5 -3.7 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_4153 -2.5 -2.7 Sensory box histidine kinase compare
Pf6N2E2_2074 -2.5 -2.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3271 -2.5 -3.6 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_3062 -2.5 -6.5 Membrane-associated zinc metalloprotease compare
Pf6N2E2_3170 -2.4 -7.0 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_2465 -2.4 -5.3 Cys regulon transcriptional activator CysB compare
Pf6N2E2_3060 -2.4 -4.0 Outer membrane protein H precursor compare
Pf6N2E2_3264 -2.3 -3.8 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_2217 -2.3 -6.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_1932 -2.3 -6.8 Transcriptional regulator, IclR family compare
Pf6N2E2_5950 -2.2 -5.5 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_1056 -2.1 -1.1 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_3984 -2.1 -11.1 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_4204 -2.1 -2.2 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_4453 -2.0 -13.7 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_2218 -2.0 -5.6 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3349 -2.0 -4.4 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_4084 -2.0 -9.0 Transcriptional regulator compare
Pf6N2E2_4009 -2.0 -10.4 GGDEF domain protein compare
Pf6N2E2_5536 -2.0 -2.1 Holliday junction DNA helicase RuvA compare
Pf6N2E2_5257 -1.9 -8.8 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_4276 -1.9 -6.0 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_70 -1.9 -4.7 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5219 -1.9 -8.4 FIG140336: TPR domain protein compare
Pf6N2E2_4611 -1.9 -3.6 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4416 -1.8 -3.3 Tyrosine recombinase XerC compare
Pf6N2E2_3942 -1.8 -8.2 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_3661 -1.8 -4.5 hypothetical protein compare
Pf6N2E2_5001 -1.8 -2.3 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_2510 -1.7 -5.8 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_760 -1.7 -10.4 Na+/H+ antiporter NhaB compare
Pf6N2E2_4759 -1.7 -12.5 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_5780 -1.7 -8.9 Periplasmic protease compare
Pf6N2E2_4362 -1.7 -2.6 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_5527 -1.7 -2.5 Cold shock protein CspC compare
Pf6N2E2_3833 -1.6 -5.6 hypothetical protein compare
Pf6N2E2_5258 -1.5 -7.6 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_595 -1.5 -3.5 Arsenical resistance operon repressor compare
Pf6N2E2_4187 -1.5 -4.6 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2282 -1.4 -4.6 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_5337 -1.4 -5.3 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2312 -1.4 -2.0 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_5339 -1.4 -6.6 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_1676 -1.4 -2.9 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_3941 -1.4 -3.3 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_3908 -1.4 -5.9 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5728 -1.4 -3.3 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_4764 -1.4 -5.0 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_2586 -1.4 -2.2 Hpt domain protein compare
Pf6N2E2_1431 -1.4 -3.8 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) compare
Pf6N2E2_5705 -1.4 -1.8 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_2124 -1.3 -2.2 Mg(2+) transport ATPase protein C compare
Pf6N2E2_2527 -1.3 -2.6 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_2574 -1.3 -1.6 Flagellar synthesis regulator FleN compare
Pf6N2E2_4797 -1.3 -2.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_4599 -1.3 -2.8 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_309 -1.3 -1.6 FIG00957702: hypothetical protein compare
Pf6N2E2_3835 -1.3 -3.4 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_4372 -1.2 -4.0 FIG00460773: hypothetical protein compare
Pf6N2E2_2513 -1.2 -3.9 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_3611 -1.2 -1.4 HflC protein compare
Pf6N2E2_3460 -1.2 -1.1 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3480 -1.2 -2.0 Transcriptional regulator, ArsR family compare
Pf6N2E2_2507 -1.1 -3.9 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_420 -1.1 -1.7 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_3763 -1.1 -1.9 hypothetical protein compare
Pf6N2E2_96 -1.1 -3.2 FIG011065: hypothetical protein compare
Pf6N2E2_5338 -1.1 -6.3 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_4451 -1.1 -4.6 FIG139438: lipoprotein B compare
Pf6N2E2_3869 -1.1 -7.2 Branched-chain amino acid transport protein AzlC compare
Pf6N2E2_4205 -1.1 -3.9 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_1287 -1.1 -3.2 Mobile element protein compare
Pf6N2E2_2311 -1.1 -5.7 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_4761 -1.1 -6.6 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_3521 -1.1 -5.5 Sensor histidine kinase/response regulator compare
Pf6N2E2_5609 -1.1 -4.6 DNA-binding response regulator ColR compare
Pf6N2E2_2310 -1.1 -6.5 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_2340 -1.0 -3.7 Transcriptional regulator, GntR family compare
Pf6N2E2_4579 -1.0 -1.6 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_3667 -1.0 -1.3 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_2320 -1.0 -2.0 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2317 -1.0 -2.6 Putative analog of CcoH, COG3198 compare
Pf6N2E2_3786 -1.0 -3.9 Twin-arginine translocation protein TatC compare
Pf6N2E2_4413 -1.0 -3.3 FIG004064: hypothetical protein compare
Pf6N2E2_1092 -1.0 -3.3 Probable vanillate O-demethylase oxygenase subunit oxidoreductase protein (EC 1.14.13.-) compare
Pf6N2E2_5328 -1.0 -2.5 FIG00958649: hypothetical protein compare
Pf6N2E2_417 -1.0 -2.6 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_2870 -1.0 -2.9 Ribonuclease BN (EC 3.1.-.-) compare
Pf6N2E2_5520 -1.0 -4.5 Sensory box histidine kinase compare
Pf6N2E2_3300 -1.0 -2.3 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_58 -0.9 -1.8 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_2313 -0.9 -2.6 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_2309 -0.9 -1.3 hypothetical protein compare
Pf6N2E2_4071 -0.9 -3.1 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_623 -0.9 -1.4 FIG00954674: hypothetical protein compare
Pf6N2E2_3461 -0.9 -1.3 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_4631 -0.9 -5.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_1691 -0.9 -2.2 hypothetical protein compare
Pf6N2E2_5405 -0.9 -3.4 ABC transporter for D-Alanine, ATPase component (from data) compare
Pf6N2E2_4593 -0.9 -2.8 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB compare
Pf6N2E2_3672 -0.9 -5.5 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) compare
Pf6N2E2_5613 -0.9 -2.2 FIG00953674: hypothetical protein compare
Pf6N2E2_3834 -0.9 -3.5 Lipoprotein NlpD compare
Pf6N2E2_2125 -0.9 -2.9 hypothetical protein compare
Pf6N2E2_344 -0.9 -2.5 hypothetical protein compare
Pf6N2E2_737 -0.9 -1.6 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_1182 -0.9 -3.2 Transcriptional regulator, LysR family compare
Pf6N2E2_3762 -0.9 -4.5 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_4059 -0.9 -1.2 DNA-binding protein HU-alpha compare
Pf6N2E2_2003 -0.9 -1.9 hypothetical protein compare
Pf6N2E2_4706 -0.9 -1.7 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_4763 -0.9 -5.9 Biotin synthesis protein BioC compare
Pf6N2E2_1116 -0.9 -1.5 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_1347 -0.9 -2.9 Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) compare
Pf6N2E2_1317 -0.9 -3.0 P-hydroxyphenylacetate hydroxylase C2:oxygenase component compare
Pf6N2E2_4351 -0.8 -5.5 Predicted signal transduction protein compare
Pf6N2E2_4331 -0.8 -2.4 hypothetical protein compare
Pf6N2E2_5252 -0.8 -1.6 FIG00956396: hypothetical protein compare
Pf6N2E2_2756 -0.8 -4.5 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_1385 -0.8 -1.1 FIG00956261: hypothetical protein compare
Pf6N2E2_3258 -0.8 -3.2 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_146 -0.8 -2.0 Transcriptional regulator, MarR family compare
Pf6N2E2_2428 -0.8 -1.7 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_5103 -0.8 -0.7 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_1006 -0.8 -1.9 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare
Pf6N2E2_370 -0.8 -2.7 Predicted enzyme of the cupin superfamily compare
Pf6N2E2_2375 -0.8 -2.1 Response regulator NasT compare
Pf6N2E2_2274 -0.8 -3.7 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_3659 -0.8 -3.1 Protein fixF compare
Pf6N2E2_5453 -0.8 -3.1 hypothetical protein compare
Pf6N2E2_425 -0.8 -2.6 FIG00957304: hypothetical protein compare
Pf6N2E2_2992 -0.8 -2.4 Regulatory protein RecX compare
Pf6N2E2_4928 -0.8 -1.3 Permeases of the major facilitator superfamily compare
Pf6N2E2_2480 -0.8 -1.3 FIG00957636: hypothetical protein compare
Pf6N2E2_3283 -0.8 -4.0 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_4417 -0.8 -2.7 Protein of unknown function DUF484 compare
Pf6N2E2_2508 -0.8 -2.5 hypothetical protein compare
Pf6N2E2_1682 -0.7 -1.9 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_1081 -0.7 -1.3 probable membrane protein YPO3302 compare
Pf6N2E2_4159 -0.7 -2.6 Cytochrome c4 compare
Pf6N2E2_5403 -0.7 -4.6 ABC transporter for D-Alanine, permease component 2 (from data) compare
Pf6N2E2_1450 -0.7 -1.3 FIG00960438: hypothetical protein compare
Pf6N2E2_16 -0.7 -1.3 hypothetical protein compare
Pf6N2E2_617 -0.7 -2.6 Probable glutathione S-transferase compare
Pf6N2E2_2714 -0.7 -1.6 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_1448 -0.7 -1.8 hypothetical protein compare
Pf6N2E2_1683 -0.7 -1.9 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_3192 -0.7 -2.5 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_3040 -0.7 -3.6 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_395 -0.7 -2.6 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_5444 -0.7 -2.3 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) compare
Pf6N2E2_5714 -0.7 -1.4 Flavoprotein WrbA compare
Pf6N2E2_5430 -0.7 -3.8 Transglycosylase, Slt family compare
Pf6N2E2_4092 -0.7 -1.9 FIG00954395: hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source L-Asparagine in Pseudomonas fluorescens FW300-N2E2

For carbon source L-Asparagine across organisms