Experiment set8IT031 for Burkholderia phytofirmans PsJN

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Deoxyribonucleic acid from herring sperm 10 mg/mL carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS14845 -5.2 -3.1 cysteine synthase compare
BPHYT_RS13705 -4.1 -4.5 chorismate synthase compare
BPHYT_RS23460 -3.7 -1.4 AraC family transcriptional regulator compare
BPHYT_RS16840 -3.7 -4.3 transketolase compare
BPHYT_RS23650 -3.5 -1.3 hypothetical protein compare
BPHYT_RS01485 -3.1 -0.8 histidine kinase compare
BPHYT_RS12990 -3.1 -2.5 iron transporter compare
BPHYT_RS25980 -3.0 -1.1 urea carboxylase compare
BPHYT_RS08850 -2.8 -1.9 transcriptional regulator compare
BPHYT_RS13220 -2.8 -7.7 phosphomethylpyrimidine synthase compare
BPHYT_RS26925 -2.8 -2.9 NIPSNAP family containing protein compare
BPHYT_RS09515 -2.8 -3.9 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS17715 -2.8 -7.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS08565 -2.8 -1.0 dihydroorotate dehydrogenase compare
BPHYT_RS16675 -2.8 -1.6 dihydroorotase compare
BPHYT_RS08960 -2.7 -1.7 threonine synthase compare
BPHYT_RS01730 -2.7 -3.4 serine/threonine protein kinase compare
BPHYT_RS13605 -2.7 -1.0 tRNA-Pro compare
BPHYT_RS16905 -2.6 -6.0 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS06555 -2.6 -5.7 ketol-acid reductoisomerase compare
BPHYT_RS08765 -2.6 -0.9 ABC transporter ATP-binding protein compare
BPHYT_RS14945 -2.5 -3.1 phosphoglycolate phosphatase compare
BPHYT_RS17890 -2.5 -2.0 shikimate kinase compare
BPHYT_RS33645 -2.5 -8.0 homoserine kinase compare
BPHYT_RS12550 -2.4 -1.1 GTP-binding protein HflX compare
BPHYT_RS03135 -2.4 -7.9 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
BPHYT_RS33135 -2.4 -2.8 LysR family transcriptional regulator compare
BPHYT_RS28705 -2.4 -1.5 IclR family transcriptional regulator compare
BPHYT_RS17680 -2.4 -2.7 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS02590 -2.4 -6.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS17690 -2.4 -9.0 imidazole glycerol phosphate synthase compare
BPHYT_RS09895 -2.3 -1.5 LysR family transcriptional regulator compare
BPHYT_RS16290 -2.3 -1.2 hypothetical protein compare
BPHYT_RS08000 -2.3 -1.4 antibiotic biosynthesis monooxygenase compare
BPHYT_RS06710 -2.2 -1.1 hypothetical protein compare
BPHYT_RS17675 -2.2 -2.3 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS16345 -2.2 -3.8 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS31050 -2.2 -1.2 epimerase compare
BPHYT_RS16835 -2.2 -4.1 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS14190 -2.2 -6.1 carbamoyl phosphate synthase large subunit compare
BPHYT_RS17400 -2.2 -7.2 anthranilate phosphoribosyltransferase compare
BPHYT_RS06610 -2.2 -1.7 triosephosphate isomerase compare
BPHYT_RS08405 -2.2 -1.5 hypothetical protein compare
BPHYT_RS17265 -2.1 -1.4 cell division protein compare
BPHYT_RS04890 -2.1 -1.5 cobalamin biosynthesis protein CobD compare
BPHYT_RS17700 -2.1 -4.0 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS17670 -2.1 -4.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS27060 -2.1 -1.8 photosystem reaction center subunit H compare
BPHYT_RS06350 -2.1 -2.3 chemotaxis protein CheY compare
BPHYT_RS34490 -2.0 -1.3 hypothetical protein compare
BPHYT_RS18320 -2.0 -7.7 orotate phosphoribosyltransferase compare
BPHYT_RS01595 -2.0 -9.1 homoserine O-acetyltransferase compare
BPHYT_RS33915 -2.0 -6.3 isopropylmalate isomerase compare
BPHYT_RS17685 -2.0 -7.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS33875 -2.0 -6.1 tryptophan synthase subunit alpha compare
BPHYT_RS03725 -1.9 -0.8 serine hydroxymethyltransferase compare
BPHYT_RS28830 -1.9 -1.1 LysR family transcriptional regulator compare
BPHYT_RS33535 -1.9 -12.2 RNA polymerase sigma factor RpoD compare
BPHYT_RS06545 -1.9 -8.2 acetolactate synthase compare
BPHYT_RS14195 -1.9 -2.8 carbamoyl phosphate synthase small subunit compare
BPHYT_RS19735 -1.9 -2.9 hypothetical protein compare
BPHYT_RS33835 -1.9 -5.2 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS08245 -1.9 -5.2 anti-sigma factor compare
BPHYT_RS33635 -1.9 -10.1 AMP nucleosidase compare
BPHYT_RS06900 -1.9 -4.8 aspartate aminotransferase compare
BPHYT_RS04965 -1.8 -8.4 ATP-binding protein compare
BPHYT_RS33840 -1.8 -5.9 amidophosphoribosyltransferase compare
BPHYT_RS03320 -1.8 -2.3 lactoylglutathione lyase compare
BPHYT_RS01095 -1.8 -1.1 hypothetical protein compare
BPHYT_RS06405 -1.8 -5.9 phosphoribosylamine--glycine ligase compare
BPHYT_RS23600 -1.8 -2.0 hypothetical protein compare
BPHYT_RS13160 -1.8 -1.5 membrane protein compare
BPHYT_RS12150 -1.8 -8.1 PII uridylyl-transferase compare
BPHYT_RS14400 -1.8 -2.2 anti-sigma factor compare
BPHYT_RS33900 -1.8 -7.8 3-isopropylmalate dehydrogenase compare
BPHYT_RS16300 -1.8 -6.7 hypothetical protein compare
BPHYT_RS04455 -1.8 -1.4 glycosyl transferase compare
BPHYT_RS20185 -1.8 -0.8 sugar transferase compare
BPHYT_RS12530 -1.8 -6.6 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS32155 -1.8 -3.6 type IV secretion system protein VirB11 compare
BPHYT_RS09385 -1.7 -0.8 FAD-dependent oxidoreductase compare
BPHYT_RS15915 -1.7 -7.7 ornithine carbamoyltransferase compare
BPHYT_RS09440 -1.7 -1.9 glycerate kinase compare
BPHYT_RS14550 -1.7 -0.7 tRNA-Asn compare
BPHYT_RS17855 -1.7 -8.1 glutamate synthase compare
BPHYT_RS08340 -1.7 -0.6 chemotaxis protein CheY compare
BPHYT_RS16990 -1.7 -4.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
BPHYT_RS03150 -1.7 -9.5 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS01500 -1.7 -9.1 7-cyano-7-deazaguanine synthase compare
BPHYT_RS11535 -1.7 -2.6 membrane protein compare
BPHYT_RS25970 -1.7 -1.0 urea amidolyase compare
BPHYT_RS26415 -1.7 -2.5 glutathione S-transferase compare
BPHYT_RS11545 -1.7 -5.0 allantoicase compare
BPHYT_RS28200 -1.7 -2.5 sugar ABC transporter substrate-binding protein compare
BPHYT_RS17725 -1.6 -5.0 BolA family transcriptional regulator compare
BPHYT_RS03640 -1.6 -2.5 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS16895 -1.6 -6.0 competence damage-inducible protein A compare
BPHYT_RS33885 -1.6 -9.1 tRNA pseudouridine synthase A compare
BPHYT_RS05705 -1.6 -1.1 hypothetical protein compare
BPHYT_RS03625 -1.6 -4.5 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS09500 -1.6 -5.1 glucose-6-phosphate isomerase compare
BPHYT_RS27655 -1.6 -0.9 potassium transporter compare
BPHYT_RS04955 -1.6 -1.9 methionyl-tRNA synthetase compare
BPHYT_RS28305 -1.6 -1.3 protein tyrosine phosphatase compare
BPHYT_RS16270 -1.6 -2.2 phosphoglycerate kinase compare
BPHYT_RS10540 -1.6 -1.3 secretion protein compare
BPHYT_RS14095 -1.6 -2.2 phosphohistidine phosphatase compare
BPHYT_RS17390 -1.6 -8.9 anthranilate synthase subunit I compare
BPHYT_RS31840 -1.6 -2.1 anhydrase compare
BPHYT_RS33865 -1.6 -5.1 tryptophan synthase alpha chain compare
BPHYT_RS18255 -1.6 -1.7 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS12615 -1.5 -1.3 dihydrodipicolinate synthase compare
BPHYT_RS11960 -1.5 -1.1 MarR family transcriptional regulator compare
BPHYT_RS05730 -1.5 -6.5 hypothetical protein compare
BPHYT_RS15415 -1.5 -6.3 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS02710 -1.5 -1.0 hypothetical protein compare
BPHYT_RS02760 -1.5 -1.8 cytochrome BD oxidase subunit II compare
BPHYT_RS14895 -1.5 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS17885 -1.5 -2.8 3-dehydroquinate synthase compare
BPHYT_RS11540 -1.5 -1.7 ureidoglycolate hydrolase compare
BPHYT_RS23035 -1.5 -2.0 hypothetical protein compare
BPHYT_RS14910 -1.5 -6.5 chorismate mutase compare
BPHYT_RS36600 -1.5 -1.9 lytic transglycosylase compare
BPHYT_RS15920 -1.5 -5.0 argininosuccinate synthase compare
BPHYT_RS20665 -1.5 -1.2 LysR family transcriptional regulator compare
BPHYT_RS19890 -1.5 -1.1 hypothetical protein compare
BPHYT_RS06535 -1.5 -3.9 membrane protein compare
BPHYT_RS13645 -1.5 -9.9 threonine--tRNA ligase compare
BPHYT_RS08955 -1.5 -4.2 homoserine dehydrogenase compare
BPHYT_RS30720 -1.5 -1.8 hypothetical protein compare
BPHYT_RS33905 -1.5 -0.7 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS22360 -1.5 -1.4 response regulator receiver compare
BPHYT_RS10100 -1.4 -2.0 dihydroxy-acid dehydratase compare
BPHYT_RS33880 -1.4 -4.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS23570 -1.4 -3.9 chemotaxis protein CheY compare
BPHYT_RS06375 -1.4 -2.6 ribonuclease compare
BPHYT_RS03535 -1.4 -4.4 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS14915 -1.4 -4.0 phosphoserine aminotransferase compare
BPHYT_RS15645 -1.4 -5.4 nicotinate-nucleotide pyrophosphorylase compare
BPHYT_RS30450 -1.4 -0.8 ABC transporter permease compare
BPHYT_RS15715 -1.4 -6.3 ATP-dependent Clp protease adapter protein ClpS compare
BPHYT_RS06530 -1.4 -1.7 membrane protein compare
BPHYT_RS22230 -1.4 -3.6 LuxR family transcriptional regulator compare
BPHYT_RS12265 -1.4 -1.4 alanine acetyltransferase compare
BPHYT_RS20890 -1.3 -1.8 transglycosylase compare
BPHYT_RS15305 -1.3 -4.4 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS24665 -1.3 -1.6 ABC transporter permease compare
BPHYT_RS34445 -1.3 -2.0 GntR family transcriptional regulator compare
BPHYT_RS17405 -1.3 -1.1 indole-3-glycerol phosphate synthase compare
BPHYT_RS29110 -1.3 -2.7 DNA-directed DNA polymerase compare
BPHYT_RS12830 -1.3 -5.7 dihydrolipoamide dehydrogenase compare
BPHYT_RS05570 -1.3 -1.8 hypothetical protein compare
BPHYT_RS03090 -1.3 -0.9 hypothetical protein compare
BPHYT_RS14710 -1.3 -2.7 hypothetical protein compare
BPHYT_RS03880 -1.3 -5.0 LysR family transcriptional regulator compare
BPHYT_RS20725 -1.3 -0.7 histidine kinase compare
BPHYT_RS19895 -1.3 -1.6 rod shape-determining protein RodA compare
BPHYT_RS30485 -1.3 -0.8 ABC transporter ATP-binding protein compare
BPHYT_RS24500 -1.3 -0.6 histidine kinase compare
BPHYT_RS15640 -1.3 -6.8 L-aspartate oxidase compare
BPHYT_RS34295 -1.3 -0.8 fimbrial protein compare
BPHYT_RS15650 -1.3 -6.5 quinolinate synthetase compare
BPHYT_RS02905 -1.3 -8.8 RNA polymerase subunit sigma-54 compare
BPHYT_RS22245 -1.3 -5.6 transporter for D-alanine, D-lactate, and pyruvate (MctP) (from data) compare
BPHYT_RS01505 -1.3 -1.9 7-cyano-7-deazaguanine reductase compare
BPHYT_RS10270 -1.3 -2.7 D-amino acid dehydrogenase compare
BPHYT_RS14105 -1.3 -7.9 exopolyphosphatase compare
BPHYT_RS10875 -1.3 -1.6 transporter compare
BPHYT_RS15100 -1.3 -6.2 guanine deaminase conserved
BPHYT_RS03730 -1.3 -2.0 transcriptional repressor NrdR compare
BPHYT_RS01510 -1.3 -3.9 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
BPHYT_RS04095 -1.3 -1.1 SAM-dependent methyltransferase PhcB compare
BPHYT_RS17395 -1.3 -1.8 anthranilate synthase subunit II compare
BPHYT_RS04335 -1.2 -1.1 membrane protein compare
BPHYT_RS02575 -1.2 -5.7 phosphoenolpyruvate-protein phosphotransferase compare
BPHYT_RS04915 -1.2 -3.6 cobyrinic acid a,c-diamide synthase compare
BPHYT_RS35310 -1.2 -1.2 GCN5 family N-acetyltransferase compare
BPHYT_RS29035 -1.2 -1.3 arsenic transporter compare
BPHYT_RS14275 -1.2 -1.6 hypothetical protein compare
BPHYT_RS17050 -1.2 -2.0 hypothetical protein compare
BPHYT_RS12465 -1.2 -1.9 inositol monophosphatase compare
BPHYT_RS28600 -1.2 -1.6 ArsC family transcriptional regulator compare
BPHYT_RS14395 -1.2 -2.6 sugar dehydratase compare
BPHYT_RS34920 -1.2 -2.0 IclR family transcriptional regulator compare
BPHYT_RS21735 -1.2 -4.7 IclR family transcriptional regulator compare
BPHYT_RS16575 -1.2 -7.2 Xaa-Pro aminopeptidase compare
BPHYT_RS14380 -1.2 -3.2 elongation factor 4 compare
BPHYT_RS16490 -1.2 -5.3 glycerol-3-phosphate dehydrogenase compare
BPHYT_RS27580 -1.2 -1.0 F0F1 ATP synthase subunit alpha compare
BPHYT_RS10885 -1.2 -1.7 glycosyl transferase compare
BPHYT_RS22455 -1.2 -0.9 phosphonate ABC transporter substrate-binding protein compare
BPHYT_RS09810 -1.2 -2.4 hypothetical protein compare
BPHYT_RS13550 -1.2 -1.5 acyl-CoA dehydrogenase compare
BPHYT_RS10040 -1.2 -1.0 hypothetical protein compare
BPHYT_RS03405 -1.2 -3.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
BPHYT_RS01315 -1.2 -2.3 cupin compare
BPHYT_RS28690 -1.2 -1.1 diguanylate phosphodiesterase compare
BPHYT_RS03875 -1.2 -2.0 dehydrogenase compare
BPHYT_RS03870 -1.2 -5.1 xanthine dehydrogenase, molybdopterin binding subunit (EC 1.17.1.4) (from data) conserved
BPHYT_RS25845 -1.2 -0.9 RND transporter MFP subunit compare


Specific Phenotypes

For 20 genes in this experiment

For carbon source Deoxyribonucleic acid from herring sperm in Burkholderia phytofirmans PsJN

For carbon source Deoxyribonucleic acid from herring sperm across organisms