Experiment set8IT030 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

200 most important genes:

  gene name fitness t score description  
BWI76_RS18955 -9.5 -6.6 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS04675 -8.9 -6.1 3-isopropylmalate dehydrogenase compare
BWI76_RS23920 -8.0 -5.5 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS18930 -7.9 -5.5 histidinol-phosphate transaminase compare
BWI76_RS11855 -7.6 -8.2 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS05840 -7.6 -5.2 glutamate 5-kinase compare
BWI76_RS18935 -7.5 -7.2 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS05835 -7.4 -5.1 gamma-glutamyl-phosphate reductase compare
BWI76_RS00785 -7.3 -5.0 cystathionine gamma-synthase compare
BWI76_RS04670 -7.3 -8.4 3-isopropylmalate dehydratase large subunit compare
BWI76_RS18940 -7.2 -7.0 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS00805 -7.1 -4.3 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS04470 -7.1 -9.7 carbamoyl phosphate synthase large subunit compare
BWI76_RS23220 -7.0 -7.5 amino-acid N-acetyltransferase compare
BWI76_RS11860 -7.0 -9.7 anthranilate synthase component I compare
BWI76_RS21265 -7.0 -14.5 phosphoribosylformylglycinamidine synthase compare
BWI76_RS04250 -7.0 -8.3 homoserine kinase compare
BWI76_RS21475 -6.9 -6.4 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS04160 -6.9 -7.6 phosphoserine phosphatase compare
BWI76_RS04665 -6.9 -20.0 3-isopropylmalate dehydratase small subunit compare
BWI76_RS00990 -6.8 -8.1 ketol-acid reductoisomerase compare
BWI76_RS00850 -6.8 -9.1 acetylglutamate kinase compare
BWI76_RS09645 -6.8 -2.5 thioredoxin-disulfide reductase compare
BWI76_RS23360 -6.7 -4.5 diaminopimelate decarboxylase compare
BWI76_RS13920 -6.7 -9.2 magnesium-translocating P-type ATPase compare
BWI76_RS25115 -6.6 -7.5 argininosuccinate synthase compare
BWI76_RS07065 -6.5 -8.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS11850 -6.4 -9.9 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS00855 -6.4 -8.8 argininosuccinate lyase compare
BWI76_RS04465 -6.4 -6.1 carbamoyl-phosphate synthase small subunit compare
BWI76_RS18925 -6.3 -4.7 histidinol dehydrogenase compare
BWI76_RS04255 -6.2 -9.2 threonine synthase compare
BWI76_RS26085 -6.1 -3.9 3-dehydroquinate synthase compare
BWI76_RS00980 -6.1 -10.2 PLP-dependent threonine dehydratase compare
BWI76_RS04685 -6.0 -9.5 putative leucine operon leader peptide compare
BWI76_RS20355 -6.0 -3.0 colicin V production protein compare
BWI76_RS25645 -5.9 -8.1 shikimate dehydrogenase compare
BWI76_RS18920 -5.9 -4.3 ATP phosphoribosyltransferase compare
BWI76_RS01615 -5.9 -11.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS08385 -5.8 -5.2 citrate (Si)-synthase compare
BWI76_RS26570 -5.8 -4.0 anion permease compare
BWI76_RS18950 -5.7 -3.8 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS04510 -5.6 -3.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS04245 -5.6 -14.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS03010 -5.5 -6.8 ornithine carbamoyltransferase compare
BWI76_RS20965 -5.4 -3.3 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS10990 -5.4 -4.8 dihydroorotase compare
BWI76_RS09755 -5.4 -5.4 phosphoserine transaminase compare
BWI76_RS04680 -5.4 -11.9 2-isopropylmalate synthase compare
BWI76_RS24285 -5.2 -8.8 cystathionine beta-lyase compare
BWI76_RS20350 -5.2 -4.7 amidophosphoribosyltransferase compare
BWI76_RS07070 -5.2 -6.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS01655 -5.2 -6.9 homoserine O-succinyltransferase compare
BWI76_RS00965 -5.2 -1.9 acetolactate synthase 2 small subunit compare
BWI76_RS00835 -5.1 -10.7 phosphoenolpyruvate carboxylase compare
BWI76_RS00845 -5.0 -6.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS25320 -5.0 -10.3 glutamate synthase compare
BWI76_RS04240 -4.9 -2.1 thr operon leader peptide compare
BWI76_RS02995 -4.9 -8.7 aspartate carbamoyltransferase compare
BWI76_RS00985 -4.9 -8.4 transcriptional regulator IlvY compare
BWI76_RS11840 -4.8 -6.1 tryptophan synthase subunit alpha compare
BWI76_RS00975 -4.8 -6.0 dihydroxy-acid dehydratase compare
BWI76_RS23365 -4.8 -7.8 LysR family transcriptional regulator compare
BWI76_RS11965 -4.8 -3.9 orotidine-5'-phosphate decarboxylase compare
BWI76_RS01800 -4.8 -6.5 glucose-6-phosphate isomerase compare
BWI76_RS22765 -4.8 -11.1 sulfite reductase subunit alpha compare
BWI76_RS02735 -4.7 -5.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS20895 -4.7 -6.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS09760 -4.6 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS11845 -4.6 -3.5 tryptophan synthase subunit beta compare
BWI76_RS09910 -4.5 -15.1 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS05200 -4.5 -3.1 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS00400 -4.3 -2.7 glutamine synthetase compare
BWI76_RS22755 -4.2 -8.6 phosphoadenosine phosphosulfate reductase compare
BWI76_RS20435 -4.1 -2.1 chorismate synthase compare
BWI76_RS01610 -4.1 -5.6 phosphoribosylamine--glycine ligase compare
BWI76_RS15115 -4.1 -6.8 MFS transporter compare
BWI76_RS23240 -4.0 -2.8 exonuclease V subunit gamma compare
BWI76_RS22690 -4.0 -3.0 adenylyl-sulfate kinase compare
BWI76_RS22760 -4.0 -7.8 sulfite reductase subunit beta compare
BWI76_RS04645 -4.0 -4.0 3-dehydroquinase compare
BWI76_RS20650 -3.8 -2.6 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS23480 -3.7 -11.4 EAL domain-containing protein compare
BWI76_RS21465 -3.5 -2.9 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS01200 -3.4 -2.6 diaminopimelate epimerase compare
BWI76_RS27385 -3.4 -6.6 orotate phosphoribosyltransferase compare
BWI76_RS27430 -3.4 -1.7 (p)ppGpp synthetase compare
BWI76_RS00960 -3.2 -4.4 acetolactate synthase 2 catalytic subunit compare
BWI76_RS06765 -3.2 -4.1 transcriptional regulator compare
BWI76_RS06525 -3.2 -4.2 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS02530 -3.1 -3.8 tRNA dimethylallyltransferase compare
BWI76_RS23265 -3.0 -3.0 hypothetical protein compare
BWI76_RS01210 -3.0 -2.9 tyrosine recombinase XerC compare
BWI76_RS26055 -3.0 -7.1 siroheme synthase compare
BWI76_RS25315 -3.0 -8.9 glutamate synthase large subunit compare
BWI76_RS23230 -2.9 -2.8 exodeoxyribonuclease V subunit beta compare
BWI76_RS00390 -2.8 -7.4 two-component system sensor histidine kinase NtrB compare
BWI76_RS27390 -2.7 -3.0 ribonuclease PH compare
BWI76_RS26000 -2.7 -7.3 aspartate aminotransferase family protein compare
BWI76_RS00345 -2.6 -3.6 protein disulfide oxidoreductase DsbA compare
BWI76_RS09655 -2.6 -6.3 leucine-responsive regulatory protein compare
BWI76_RS09660 -2.5 -2.4 DNA translocase FtsK compare
BWI76_RS05015 -2.5 -2.6 transcriptional regulator compare
BWI76_RS15225 -2.4 -2.3 DeoR family transcriptional regulator compare
BWI76_RS01185 -2.2 -2.4 adenylate cyclase compare
BWI76_RS06530 -2.0 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS01275 -2.0 -7.1 LysR family transcriptional regulator compare
BWI76_RS00385 -2.0 -5.4 nitrogen assimilation regulatory protein compare
BWI76_RS09635 -1.9 -2.1 amino acid ABC transporter ATP-binding protein compare
BWI76_RS25280 -1.9 -2.2 RNase adaptor protein RapZ compare
BWI76_RS21450 -1.8 -2.9 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS13915 -1.8 -3.3 magnesium transport protein MgtC compare
BWI76_RS06015 -1.7 -2.0 hypothetical protein compare
BWI76_RS23915 -1.7 -2.7 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS06770 -1.7 -6.8 Hha toxicity attenuator compare
BWI76_RS04305 -1.6 -1.2 molecular chaperone DnaJ compare
BWI76_RS25065 -1.6 -3.0 polyribonucleotide nucleotidyltransferase compare
BWI76_RS19935 -1.6 -1.8 hypothetical protein compare
BWI76_RS17975 -1.6 -4.2 tail-specific protease compare
BWI76_RS25060 -1.6 -3.5 lipoprotein NlpI compare
BWI76_RS18755 -1.5 -1.4 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS13560 -1.5 -1.2 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS18870 -1.5 -1.5 protein NifZ compare
BWI76_RS15110 -1.5 -8.0 putative excinuclease ABC subunit A compare
BWI76_RS22805 -1.5 -5.9 GTP diphosphokinase compare
BWI76_RS18715 -1.5 -6.1 hypothetical protein compare
BWI76_RS18710 -1.5 -9.1 GGDEF-domain containing protein compare
BWI76_RS20440 -1.5 -1.6 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS22090 -1.5 -2.1 transcriptional regulator compare
BWI76_RS25600 -1.4 -1.0 tRNA-Thr compare
BWI76_RS20490 -1.4 -2.5 hypothetical protein compare
BWI76_RS11130 -1.4 -7.4 PTS glucose transporter subunit IIBC compare
BWI76_RS15840 -1.4 -2.6 prophage protein compare
BWI76_RS20050 -1.4 -1.5 hypothetical protein compare
BWI76_RS21480 -1.4 -3.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS27165 -1.4 -3.6 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS22695 -1.4 -2.8 sulfate adenylyltransferase compare
BWI76_RS26175 -1.4 -2.9 DeoR/GlpR family transcriptional regulator compare
BWI76_RS21370 -1.4 -2.4 ATP-dependent RNA helicase SrmB compare
BWI76_RS20640 -1.3 -2.6 cysteine synthase A compare
BWI76_RS22475 -1.3 -1.7 heme ABC transporter ATP-binding protein compare
BWI76_RS24025 -1.3 -4.5 agmatinase compare
BWI76_RS04100 -1.2 -3.4 peptide chain release factor 3 compare
BWI76_RS00355 -1.2 -2.7 DNA polymerase I compare
BWI76_RS01885 -1.2 -1.1 CsbD family protein compare
BWI76_RS13595 -1.2 -2.6 transcriptional regulator compare
BWI76_RS25480 -1.2 -3.2 ribonuclease E/G compare
BWI76_RS00180 -1.2 -0.8 F0F1 ATP synthase subunit epsilon compare
BWI76_RS00380 -1.2 -5.2 oxygen-independent coproporphyrinogen III oxidase compare
BWI76_RS26620 -1.2 -1.0 Fe-S biogenesis protein NfuA compare
BWI76_RS20900 -1.2 -1.3 outer membrane protein assembly factor BamC compare
BWI76_RS19700 -1.1 -1.8 deoxyribonuclease IV compare
BWI76_RS09690 -1.1 -1.8 dimethyl sulfoxide reductase compare
BWI76_RS13590 -1.1 -1.5 hypothetical protein compare
BWI76_RS15835 -1.1 -0.8 hypothetical protein compare
BWI76_RS09650 -1.1 -3.9 hypothetical protein compare
BWI76_RS26775 -1.1 -2.1 endo-1,4-D-glucanase compare
BWI76_RS23885 -1.1 -1.4 2-octaprenylphenol hydroxylase compare
BWI76_RS23485 -1.1 -4.8 hypothetical protein compare
BWI76_RS09190 -1.1 -2.9 hypothetical protein compare
BWI76_RS15830 -1.1 -2.0 hypothetical protein compare
BWI76_RS04525 -1.1 -1.4 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS01195 -1.1 -1.6 membrane protein compare
BWI76_RS21565 -1.1 -1.1 outer membrane protein assembly factor BamE compare
BWI76_RS01350 -1.1 -0.9 NAD(P)H-flavin reductase compare
BWI76_RS06490 -1.1 -2.9 cytochrome ubiquinol oxidase subunit I compare
BWI76_RS03815 -1.1 -1.9 hypothetical protein compare
BWI76_RS25505 -1.1 -3.4 RNase E specificity factor CsrD compare
BWI76_RS08665 -1.1 -5.1 6-phosphogluconolactonase compare
BWI76_RS21140 -1.1 -2.6 molecular chaperone HscA compare
BWI76_RS16965 -1.0 -1.4 murein lipoprotein compare
BWI76_RS22085 -1.0 -2.7 L-valine transporter subunit YgaH compare
BWI76_RS04705 -1.0 -3.4 DNA-binding transcriptional regulator FruR compare
BWI76_RS21000 -1.0 -4.1 exopolyphosphatase compare
BWI76_RS01870 -1.0 -3.4 diacylglycerol kinase compare
BWI76_RS10035 -1.0 -1.6 hypothetical protein compare
BWI76_RS12470 -1.0 -1.5 thiosulfate sulfurtransferase PspE compare
BWI76_RS25925 -1.0 -3.3 hypothetical protein compare
BWI76_RS19025 -1.0 -5.8 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
BWI76_RS00600 -1.0 -3.6 LacI family transcriptional regulator compare
BWI76_RS17965 -1.0 -1.7 MFS transporter compare
BWI76_RS06665 -1.0 -2.3 membrane protein compare
BWI76_RS05450 -1.0 -1.2 ribonuclease HI compare
BWI76_RS26685 -1.0 -3.8 glutathione-disulfide reductase compare
BWI76_RS14625 -1.0 -1.1 protein TolA compare
BWI76_RS17350 -1.0 -1.6 DNA-binding response regulator compare
BWI76_RS07510 -1.0 -1.9 hypothetical protein compare
BWI76_RS01385 -1.0 -2.0 potassium transporter compare
BWI76_RS07435 -0.9 -2.0 LacI family transcriptional regulator compare
BWI76_RS26410 -0.9 -1.1 membrane protein compare
BWI76_RS15450 -0.9 -3.5 hypothetical protein compare
BWI76_RS11980 -0.9 -1.5 DeoR family transcriptional regulator compare
BWI76_RS19215 -0.9 -1.4 proline-specific peptidase compare
BWI76_RS07725 -0.9 -1.0 iron-enterobactin transporter permease compare
BWI76_RS27425 -0.9 -0.9 DNA-directed RNA polymerase subunit omega compare
BWI76_RS04565 -0.9 -2.1 bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA compare
BWI76_RS25205 -0.9 -1.7 hypothetical protein compare
BWI76_RS08985 -0.9 -2.6 threonine/homoserine exporter RhtA compare
BWI76_RS07730 -0.9 -1.1 iron-enterobactin transporter membrane protein compare
BWI76_RS15215 -0.9 -1.0 N-acetyltransferase compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms