Experiment set8IT030 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS10745 +1.6 3.1 hypothetical protein compare
BWI76_RS17765 +1.2 3.1 hypothetical protein compare
BWI76_RS25000 +1.1 2.2 malonate decarboxylase acyl carrier protein compare
BWI76_RS01545 +1.1 3.5 thiamine biosynthesis protein ThiS compare
BWI76_RS08210 +1.1 3.6 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS19615 +1.1 3.8 vancomycin high temperature exclusion protein compare
BWI76_RS18335 +1.1 5.9 DNA-binding response regulator compare
BWI76_RS07995 +1.0 3.0 twin-arginine translocase subunit TatA compare
BWI76_RS07985 +1.0 1.6 fluoride ion transporter CrcB compare
BWI76_RS05075 +1.0 1.4 type II secretion system protein GspG compare
BWI76_RS12170 +1.0 1.2 hypothetical protein compare
BWI76_RS01905 +0.9 3.1 envelope stress response protein PspG compare
BWI76_RS16315 +0.9 2.3 SirA-like protein compare
BWI76_RS06325 +0.9 2.2 hypothetical protein compare
BWI76_RS01585 +0.9 2.8 transcriptional regulator compare
BWI76_RS11780 +0.9 2.8 2-deoxyglucose-6-phosphatase compare
BWI76_RS07740 +0.9 2.4 Fe2+-enterobactin ABC transporter substrate-binding protein compare
BWI76_RS18605 +0.9 2.3 oxidoreductase molybdopterin-binding protein compare
BWI76_RS24885 +0.9 1.5 PTS galactitol transporter subunit IIB compare
BWI76_RS13775 +0.9 2.0 putative FMN-dependent luciferase-like monooxygenase compare
BWI76_RS02180 +0.9 1.4 hypothetical protein compare
BWI76_RS08020 +0.9 4.2 serine-type D-Ala-D-Ala carboxypeptidase compare
BWI76_RS08380 +0.9 1.6 endonuclease VIII compare
BWI76_RS06465 +0.9 1.3 IclR family transcriptional regulator compare
BWI76_RS11440 +0.8 1.6 hypothetical protein compare
BWI76_RS21245 +0.8 3.2 nitrogen regulatory protein P-II compare
BWI76_RS09490 +0.8 3.0 DNA-binding response regulator compare
BWI76_RS24485 +0.8 2.1 bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase compare
BWI76_RS26665 +0.8 2.3 DNA-binding response regulator compare
BWI76_RS16425 +0.8 1.5 hypothetical protein compare
BWI76_RS26470 +0.8 3.0 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS20145 +0.8 1.8 NADH-quinone oxidoreductase subunit K compare
BWI76_RS17645 +0.8 2.2 hypothetical protein compare
BWI76_RS22975 +0.8 2.7 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA compare
BWI76_RS22815 +0.8 4.9 hybrid sensor histidine kinase/response regulator compare
BWI76_RS01675 +0.8 2.6 putative cytoplasmic protein compare
BWI76_RS10820 +0.8 2.8 iron uptake system protein EfeO compare
BWI76_RS11125 +0.8 1.7 metal-dependent hydrolase compare
BWI76_RS01650 +0.8 2.3 acetyltransferase compare
BWI76_RS24925 +0.8 1.0 DnaA initiator-associating protein DiaA compare
BWI76_RS26080 +0.8 3.7 cell division protein DamX compare
BWI76_RS24945 +0.8 1.2 glutamine amidotransferase compare
BWI76_RS21115 +0.8 2.2 3-mercaptopyruvate sulfurtransferase compare
BWI76_RS01995 +0.8 1.4 AraC family transcriptional regulator compare
BWI76_RS10755 +0.7 1.5 pyrimidine utilization flavin reductase protein F compare
BWI76_RS18770 +0.7 1.2 DNA gyrase inhibitor compare
BWI76_RS24110 +0.7 1.3 YggU family protein compare
BWI76_RS12550 +0.7 1.3 hypothetical protein compare
BWI76_RS22095 +0.7 1.7 multidrug export protein EmrA compare
BWI76_RS07855 +0.7 2.0 PucR family transcriptional regulator compare
BWI76_RS01540 +0.7 1.3 thiamine biosynthesis protein ThiS compare
BWI76_RS01895 +0.7 2.7 cupin compare
BWI76_RS07350 +0.7 3.2 alcohol dehydrogenase compare
BWI76_RS11810 +0.7 2.0 outer membrane protein OmpW compare
BWI76_RS23470 +0.7 5.7 hypothetical protein compare
BWI76_RS12895 +0.7 1.2 hypothetical protein compare
BWI76_RS05810 +0.7 1.3 hypothetical protein compare
BWI76_RS23505 +0.7 5.9 ferrous iron transporter B compare
BWI76_RS20565 +0.7 1.2 hypothetical protein compare
BWI76_RS19495 +0.6 1.1 ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein compare
BWI76_RS19770 +0.6 1.9 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS04975 +0.6 3.1 PTS fructose subfamily transporter subunit IIA compare
BWI76_RS17470 +0.6 2.1 MerR family transcriptional regulator compare
BWI76_RS06290 +0.6 1.7 ACP phosphodiesterase compare
BWI76_RS10770 +0.6 2.0 pyrimidine utilization protein C compare
BWI76_RS19480 +0.6 1.2 transcriptional regulator compare
BWI76_RS02690 +0.6 1.7 hypothetical protein compare
BWI76_RS08370 +0.6 2.3 membrane protein compare
BWI76_RS04655 +0.6 1.6 shikimate dehydrogenase compare
BWI76_RS08975 +0.6 2.0 amino acid ABC transporter substrate-binding protein compare
BWI76_RS13755 +0.6 0.6 hypothetical protein compare
BWI76_RS07075 +0.6 2.8 hypothetical protein compare
BWI76_RS11255 +0.6 1.6 putrescine/spermidine ABC transporter ATP-binding protein compare
BWI76_RS17525 +0.6 1.5 XshC-Cox1-family protein compare
BWI76_RS07790 +0.6 1.7 plasmid stabilization protein compare
BWI76_RS09420 +0.6 1.8 hypothetical protein compare
BWI76_RS15210 +0.6 1.4 LysR family transcriptional regulator compare
BWI76_RS27620 +0.6 1.9 hypothetical protein compare
BWI76_RS09505 +0.6 2.3 arginine transporter permease subunit ArtM compare
BWI76_RS13545 +0.6 1.2 N-acetyltransferase compare
BWI76_RS16200 +0.6 2.2 NAD(P) transhydrogenase subunit beta compare
BWI76_RS00760 +0.6 1.2 cell division protein FtsN compare
BWI76_RS02580 +0.6 0.8 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS24625 +0.6 1.5 hypothetical protein compare
BWI76_RS11790 +0.6 1.9 acyl-CoA thioesterase compare
BWI76_RS14740 +0.6 2.3 LysR family transcriptional regulator compare
BWI76_RS09560 +0.6 1.4 DoxX family membrane protein compare
BWI76_RS20225 +0.6 2.9 hypothetical protein compare
BWI76_RS05430 +0.6 2.4 UbiE/COQ5 family methyltransferase compare
BWI76_RS20155 +0.6 0.8 NADH-quinone oxidoreductase subunit I compare
BWI76_RS19460 +0.6 1.5 lipoprotein compare
BWI76_RS19365 +0.6 2.4 ribulokinase compare
BWI76_RS08640 +0.6 1.4 multidrug efflux pump-associated protein, AcrZ family compare
BWI76_RS20170 +0.6 2.0 NADH-quinone oxidoreductase subunit F compare
BWI76_RS20180 +0.6 2.7 NADH-quinone oxidoreductase subunit C/D compare
BWI76_RS07600 +0.6 1.4 aspartate aminotransferase family protein compare
BWI76_RS22505 +0.5 2.7 3-oxoacyl-ACP reductase compare
BWI76_RS11155 +0.5 1.2 penicillin-binding protein activator LpoB compare
BWI76_RS26075 +0.5 1.4 DNA adenine methylase compare
BWI76_RS13205 +0.5 1.5 hypothetical protein compare
BWI76_RS09860 +0.5 1.5 hypothetical protein compare
BWI76_RS19835 +0.5 2.9 nucleoid-associated protein YejK compare
BWI76_RS06635 +0.5 1.6 methylated-DNA--protein-cysteine methyltransferase compare
BWI76_RS26515 +0.5 2.2 nickel import ATP-binding protein NikD compare
BWI76_RS06340 +0.5 0.8 hypothetical protein compare
BWI76_RS01190 +0.5 1.1 iron donor protein CyaY compare
BWI76_RS04970 +0.5 0.9 ABC transporter permease compare
BWI76_RS26755 +0.5 2.5 peptidase M16 compare
BWI76_RS11190 +0.5 1.7 putative TetR/AcrR family transcriptional regulatory protein compare
BWI76_RS20130 +0.5 3.2 NADH-quinone oxidoreductase subunit N compare
BWI76_RS12575 +0.5 1.2 FAD-dependent oxidoreductase compare
BWI76_RS26440 +0.5 0.9 hypothetical protein compare
BWI76_RS26875 +0.5 1.3 dipeptide ABC transporter permease DppC compare
BWI76_RS22450 +0.5 1.7 selenoprotein W-related protein compare
BWI76_RS21340 +0.5 1.1 SoxR reducing system protein RseC compare
BWI76_RS09145 +0.5 1.6 serine-type D-Ala-D-Ala carboxypeptidase compare
BWI76_RS20465 +0.5 1.1 hypothetical protein compare
BWI76_RS15190 +0.5 2.4 GGDEF domain-containing protein compare
BWI76_RS23580 +0.5 1.9 hypothetical protein compare
BWI76_RS26455 +0.5 1.2 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS07620 +0.5 3.0 transcriptional regulator BetI compare
BWI76_RS11300 +0.5 0.8 cupin compare
BWI76_RS15435 +0.5 0.9 hypothetical protein compare
BWI76_RS09520 +0.5 1.1 arginine ABC transporter ATP-binding protein ArtP compare
BWI76_RS12885 +0.5 1.1 hypothetical protein compare
BWI76_RS04055 +0.5 4.3 GGDEF domain-containing protein compare
BWI76_RS12870 +0.5 1.2 putative phytanoyl-CoA dioxygenase compare
BWI76_RS22940 +0.5 2.7 DNA-binding transcriptional activator FucR compare
BWI76_RS05975 +0.5 2.4 ABC transporter ATP-binding protein compare
BWI76_RS13330 +0.5 1.1 tellurite resistance methyltransferase TehB compare
BWI76_RS18695 +0.5 1.5 GntR family transcriptional regulator compare
BWI76_RS26290 +0.5 1.7 glycerol-3-phosphate ABC transporter ATP-binding protein compare
BWI76_RS13195 +0.5 1.7 glutamate dehydrogenase compare
BWI76_RS20540 +0.5 2.3 NupC/NupG family nucleoside CNT transporter compare
BWI76_RS19560 +0.5 2.0 beta-1,4-xylanase compare
BWI76_RS02745 +0.5 0.8 hypothetical protein compare
BWI76_RS08395 +0.5 1.2 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS15845 +0.5 0.7 hypothetical protein compare
BWI76_RS26670 +0.5 3.0 two-component sensor histidine kinase compare
BWI76_RS16735 +0.5 2.1 cold-shock protein compare
BWI76_RS21490 +0.5 3.5 GGDEF domain-containing protein compare
BWI76_RS10840 +0.5 3.1 membrane protein compare
BWI76_RS26805 +0.5 0.8 cellulose biosynthesis protein BcsF compare
BWI76_RS23575 +0.5 2.0 hypothetical protein compare
BWI76_RS07965 +0.5 2.5 anaerobic C4-dicarboxylate transporter DcuC compare
BWI76_RS26575 +0.5 1.7 universal stress protein B compare
BWI76_RS23755 +0.5 2.0 transcriptional regulator compare
BWI76_RS14460 +0.5 2.0 MurR/RpiR family transcriptional regulator compare
BWI76_RS24765 +0.5 1.5 membrane protein compare
BWI76_RS15340 +0.5 1.8 urea ABC transporter substrate-binding protein compare
BWI76_RS04605 +0.5 0.8 thiamine ABC transporter ATP-binding protein compare
BWI76_RS14970 +0.5 1.1 pyrroline-5-carboxylate reductase compare
BWI76_RS18385 +0.5 0.7 hypothetical protein compare
BWI76_RS25705 +0.5 2.0 hypothetical protein compare
BWI76_RS05500 +0.5 2.6 NADH:ubiquinone reductase (Na(+)-transporting) subunit C compare
BWI76_RS15785 +0.5 2.0 replication protein compare
BWI76_RS16090 +0.4 0.8 two-component system response regulator DcuR compare
BWI76_RS22430 +0.4 2.1 manganese/iron transporter ATP-binding protein compare
BWI76_RS07595 +0.4 1.2 putative oxidoreductase compare
BWI76_RS08545 +0.4 1.6 cell division protein CpoB compare
BWI76_RS14665 +0.4 1.3 minor fimbrial subunit YfcQ compare
BWI76_RS13480 +0.4 1.0 XRE family transcriptional regulator compare
BWI76_RS11110 +0.4 1.5 cell division protein YceG compare
BWI76_RS20810 +0.4 2.2 ethanolamine utilization cobalamin adenosyltransferase compare
BWI76_RS17850 +0.4 2.5 alginate lyase compare
BWI76_RS23320 +0.4 0.9 hypothetical protein compare
BWI76_RS18855 +0.4 1.6 cysteine desulfurase NifS compare
BWI76_RS22215 +0.4 1.2 PTS sorbitol transporter subunit IIC compare
BWI76_RS24575 +0.4 0.5 hypothetical protein compare
BWI76_RS24775 +0.4 1.5 hypothetical protein compare
BWI76_RS26980 +0.4 1.3 cold-shock protein compare
BWI76_RS18675 +0.4 1.6 fimbrial protein compare
BWI76_RS04135 +0.4 1.6 thymidine phosphorylase compare
BWI76_RS12555 +0.4 2.4 hypothetical protein compare
BWI76_RS06520 +0.4 2.1 trigger factor compare
BWI76_RS18015 +0.4 2.3 serine/threonine-protein phosphatase compare
BWI76_RS26095 +0.4 0.9 shikimate kinase compare
BWI76_RS24330 +0.4 2.2 TIGR00156 family protein compare
BWI76_RS08965 +0.4 1.1 glutamine ABC transporter ATP-binding protein compare
BWI76_RS23965 +0.4 1.6 arginine exporter protein compare
BWI76_RS00950 +0.4 2.2 ATP-dependent protease compare
BWI76_RS09390 +0.4 2.2 phage tail protein compare
BWI76_RS19470 +0.4 1.2 DNA-binding response regulator compare
BWI76_RS12390 +0.4 1.0 antibiotic biosynthesis monooxygenase compare
BWI76_RS05570 +0.4 0.7 hypothetical protein compare
BWI76_RS16870 +0.4 1.9 LysR family transcriptional regulator compare
BWI76_RS06335 +0.4 0.9 nucleoside-specific channel-forming protein Tsx compare
BWI76_RS22435 +0.4 1.4 iron ABC transporter permease AfeC compare
BWI76_RS15270 +0.4 2.4 phenazine biosynthesis protein PhzF family compare
BWI76_RS18575 +0.4 1.3 transcriptional regulator compare
BWI76_RS24875 +0.4 2.2 tagatose-1,6-bisphosphate aldolase compare
BWI76_RS09475 +0.4 1.4 putrescine ABC transporter permease PotI compare
BWI76_RS00080 +0.4 1.0 N-acetylmannosamine kinase compare
BWI76_RS07200 +0.4 2.3 MFS transporter compare
BWI76_RS21495 +0.4 1.8 outer membrane lipoprotein compare
BWI76_RS16195 +0.4 0.5 hypothetical protein compare
BWI76_RS09460 +0.4 1.1 spermidine/putrescine ABC transporter substrate-binding protein PotF compare
BWI76_RS01565 +0.4 0.9 NADH pyrophosphatase compare
BWI76_RS21485 +0.4 2.4 DUF4154 domain-containing protein compare
BWI76_RS21010 +0.4 2.0 Negative regulator of nickel and cobalt uptake (YfgG) (from data) compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms