Experiment set8IT029 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Citric Acid 16.67 mM carbon source

Genes with specific phenotypes:

  gene name fitness t score description  
Xcc-8004.4087.1 -3.7 -9.9 Sulfate and thiosulfate binding protein CysP compare
Xcc-8004.2348.1 -3.7 -12.0 hypothetical protein compare
Xcc-8004.488.1 -3.6 -8.0 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
Xcc-8004.1913.1 -3.5 -14.2 NLP/P60 family protein compare
Xcc-8004.2167.1 -3.5 -7.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Xcc-8004.5065.1 -3.4 -9.2 Mg/Co/Ni transporter MgtE / CBS domain compare
Xcc-8004.1776.1 -3.1 -5.1 Histone acetyltransferase HPA2 and related acetyltransferases compare
Xcc-8004.636.1 -3.1 -9.9 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Xcc-8004.1655.1 -3.0 -8.2 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
Xcc-8004.4107.1 -3.0 -9.6 FIG01210215: hypothetical protein compare
Xcc-8004.4085.1 -3.0 -9.5 Sulfate transport system permease protein CysW compare
Xcc-8004.4922.1 -2.9 -7.8 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Xcc-8004.469.1 -2.8 -7.7 Glycerol kinase (EC 2.7.1.30) compare
Xcc-8004.4265.1 -2.8 -7.4 acetoin utilization family protein compare
Xcc-8004.4920.1 -2.7 -9.0 POSSIBLE LINOLEOYL-CoA DESATURASE (DELTA(6)-DESATURASE) compare
Xcc-8004.4618.1 -2.7 -10.4 FIG01209774: hypothetical protein compare
Xcc-8004.3598.1 -2.7 -7.2 Ferredoxin II compare
Xcc-8004.5062.1 -2.6 -8.7 Integral membrane protein compare
Xcc-8004.3839.1 -2.4 -7.7 Arginine-tRNA-protein transferase (EC 2.3.2.8) compare
Xcc-8004.4933.1 -2.4 -9.4 Hydrolase or peptidase compare
Xcc-8004.544.1 -2.4 -10.4 Glycogen debranching enzyme (EC 3.2.1.-) compare
Xcc-8004.540.1 -2.4 -11.2 Malto-oligosyltrehalose trehalohydrolase (EC 3.2.1.141) compare
Xcc-8004.1224.1 -2.4 -6.8 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB compare
Xcc-8004.1711.1 -2.4 -7.0 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Xcc-8004.4336.1 -2.4 -7.5 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Xcc-8004.4035.1 -2.3 -6.8 FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) compare
Xcc-8004.2165.1 -2.3 -12.6 Ornithine aminotransferase (EC 2.6.1.13); Succinylornithine transaminase (EC 2.6.1.81); Acetylornithine aminotransferase (EC 2.6.1.11); N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) compare
Xcc-8004.3118.1 -2.2 -6.1 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS compare
Xcc-8004.4222.1 -2.2 -7.1 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) compare
Xcc-8004.384.1 -2.2 -6.8 Deoxyribonuclease TatD compare
Xcc-8004.541.1 -2.2 -6.0 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) compare
Xcc-8004.2224.1 -2.1 -10.0 tRNA-i(6)A37 methylthiotransferase compare
Xcc-8004.3370.1 -2.0 -9.8 3'-to-5' exoribonuclease RNase R compare
Xcc-8004.4777.1 -2.0 -9.9 ATP-dependent RNA helicase RhlB compare
Xcc-8004.532.1 -2.0 -5.7 ABC1 family protein compare
Xcc-8004.2333.1 -2.0 -7.4 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.1577.1 -2.0 -7.2 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Xcc-8004.1478.1 -1.9 -5.9 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) compare
Xcc-8004.2332.1 -1.9 -7.1 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Xcc-8004.1890.1 -1.9 -5.4 hypothetical protein compare
Xcc-8004.4877.1 -1.9 -14.2 Membrane proteins related to metalloendopeptidases compare
Xcc-8004.2349.1 -1.7 -5.8 Aliphatic amidase AmiE (EC 3.5.1.4) compare
Xcc-8004.2739.1 -1.7 -7.8 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Xcc-8004.2152.1 -1.6 -8.5 Chaperone protein HtpG compare
Xcc-8004.4092.1 -1.6 -5.5 FIG01209901: hypothetical protein compare
Xcc-8004.1824.1 -1.5 -5.4 Zinc-regulated outer membrane receptor compare
Xcc-8004.4396.1 -1.5 -6.1 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.1066.1 -1.5 -7.4 hypothetical protein compare
Xcc-8004.4838.1 -1.5 -6.4 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.4578.1 -1.5 -5.7 FIG048548: ATP synthase protein I2 compare
Xcc-8004.3293.1 -1.4 -5.0 Histidine utilization repressor compare
Xcc-8004.1348.1 -1.4 -7.5 Type IV pilin PilA compare
Xcc-8004.2158.1 -1.4 -5.9 Gamma-glutamyltranspeptidase (EC 2.3.2.2) compare
Xcc-8004.205.1 -1.3 -7.9 Ribose operon repressor compare
Xcc-8004.2896.1 -1.3 -6.7 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Xcc-8004.4936.1 -1.3 -5.0 FIG01212169: hypothetical protein compare
Xcc-8004.2740.1 -1.3 -8.4 Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) compare
Xcc-8004.185.1 -1.3 -7.3 Trehalose synthase (EC 5.4.99.16) compare
Xcc-8004.184.1 -1.3 -6.6 Alpha-amylase (EC 3.2.1.1) compare
Xcc-8004.4214.1 -1.2 -6.9 Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) compare
Xcc-8004.3605.1 -1.2 -6.2 hypothetical protein compare
Xcc-8004.3604.1 -1.2 -5.8 COG2907: Amine oxidase, flavin-containing compare
Xcc-8004.573.1 -1.2 -5.7 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) compare
Xcc-8004.1671.1 -1.1 -5.2 FIG01211114: hypothetical protein compare
Xcc-8004.808.1 -1.0 -5.2 Trehalase (EC 3.2.1.28); Periplasmic trehalase precursor (EC 3.2.1.28) compare
Xcc-8004.2616.1 -1.0 -5.9 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) conserved
Xcc-8004.1480.1 -1.0 -5.1 ATP dependent RNA helicase compare
Xcc-8004.2416.1 -1.0 -7.2 FIG01210457: hypothetical protein compare
Xcc-8004.2894.1 -1.0 -7.2 Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) compare
Xcc-8004.5157.1 +1.1 5.3 Acetyl-coenzyme A synthetase (EC 6.2.1.1) compare
Xcc-8004.1033.1 +1.1 6.5 hypothetical protein compare
Xcc-8004.5254.1 +1.2 6.6 Transcriptional regulator, LacI family compare
Xcc-8004.3392.1 +1.3 6.8 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) compare
Xcc-8004.4492.1 +1.3 8.2 Bifunctional acetyl transferase/isomerase compare
Xcc-8004.2370.1 +1.4 8.5 Hypothetical protein USSDB1E compare
Xcc-8004.2231.1 +1.4 8.6 Stringent starvation protein A compare
Xcc-8004.2084.1 +1.5 6.8 Xanthan biosynthesis acetyltransferase GumF compare
Xcc-8004.273.1 +1.5 9.0 FIG01209870: hypothetical protein compare
Xcc-8004.570.1 +1.5 9.6 Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) compare
Xcc-8004.1826.1 +1.6 5.1 FIG01217340: hypothetical protein compare
Xcc-8004.1110.1 +1.6 9.6 DedA protein compare
Xcc-8004.967.1 +1.8 8.3 Endonuclease/exonuclease/phosphatase family protein compare
Xcc-8004.4505.1 +2.2 5.8 membrane protein WxcE compare
Xcc-8004.3389.1 +2.4 13.3 Nucleoprotein/polynucleotide-associated enzyme compare
Xcc-8004.4494.1 +2.5 20.8 hypothetical protein compare
Xcc-8004.1702.1 +2.5 13.3 Proteins containing SET domain compare
Xcc-8004.1332.1 +2.8 17.4 Ribosomal protein S6 glutaminyl transferase compare
Xcc-8004.4518.1 +3.0 19.7 Cystathionine beta-synthase (EC 4.2.1.22) compare
Xcc-8004.4508.1 +3.1 10.5 Kinase compare
Xcc-8004.3129.1 +3.4 7.8 FIG139438: lipoprotein B compare
Xcc-8004.5181.1 +3.5 7.1 Sensor histidine kinase compare
Xcc-8004.5156.1 +3.8 15.3 FIG01210829: hypothetical protein compare
Xcc-8004.5154.1 +5.3 36.9 Putative membrane protein, clustering with ActP compare
Xcc-8004.5158.1 +5.3 24.6 Transcriptional regulator, LuxR family compare
Xcc-8004.5153.1 +5.4 42.9 Acetate permease ActP (cation/acetate symporter) compare


Specific phenotypes for carbon source Citric Acid across organisms