Experiment set8IT028 for Burkholderia phytofirmans PsJN

Compare to:

2-Deoxyadenosine 5-monophosphate 5 mM carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS06190 -7.5 -3.7 heptosyltransferase compare
BPHYT_RS04370 -5.1 -1.3 glycosyl transferase compare
BPHYT_RS17405 -5.0 -1.2 indole-3-glycerol phosphate synthase compare
BPHYT_RS14845 -4.9 -2.7 cysteine synthase compare
BPHYT_RS00815 -4.8 -1.2 hypothetical protein compare
BPHYT_RS36570 -4.8 -1.2 histone compare
BPHYT_RS14195 -4.8 -3.6 carbamoyl phosphate synthase small subunit compare
BPHYT_RS04385 -4.7 -3.0 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS28575 -4.6 -1.1 transcriptional regulator compare
BPHYT_RS03480 -4.5 -5.8 ferritin compare
BPHYT_RS17525 -4.3 -2.0 glutaredoxin compare
BPHYT_RS06175 -4.3 -6.2 LPS biosynthesis compare
BPHYT_RS25980 -4.3 -1.1 urea carboxylase compare
BPHYT_RS08960 -4.2 -1.8 threonine synthase compare
BPHYT_RS06195 -4.2 -1.9 membrane protein compare
BPHYT_RS33645 -4.1 -3.5 homoserine kinase compare
BPHYT_RS17890 -3.9 -1.7 shikimate kinase compare
BPHYT_RS33835 -3.8 -8.8 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS33915 -3.8 -8.1 isopropylmalate isomerase compare
BPHYT_RS06610 -3.8 -1.3 triosephosphate isomerase compare
BPHYT_RS16835 -3.7 -5.6 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS06555 -3.6 -10.5 ketol-acid reductoisomerase compare
BPHYT_RS08245 -3.6 -5.0 anti-sigma factor compare
BPHYT_RS17680 -3.6 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS09500 -3.5 -5.8 glucose-6-phosphate isomerase compare
BPHYT_RS33880 -3.5 -8.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS15920 -3.5 -8.4 argininosuccinate synthase compare
BPHYT_RS04890 -3.5 -1.2 cobalamin biosynthesis protein CobD compare
BPHYT_RS02860 -3.5 -1.2 membrane protein compare
BPHYT_RS04955 -3.5 -1.9 methionyl-tRNA synthetase compare
BPHYT_RS08850 -3.4 -1.6 transcriptional regulator compare
BPHYT_RS17855 -3.4 -15.0 glutamate synthase compare
BPHYT_RS14400 -3.4 -3.6 anti-sigma factor compare
BPHYT_RS06545 -3.3 -9.6 acetolactate synthase compare
BPHYT_RS04290 -3.3 -1.6 glycosyl transferase family 2 compare
BPHYT_RS13705 -3.3 -3.4 chorismate synthase compare
BPHYT_RS22260 -3.1 -1.5 hypothetical protein compare
BPHYT_RS05225 -3.1 -8.6 phosphoenolpyruvate carboxylase compare
BPHYT_RS02590 -3.1 -5.9 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS17395 -3.1 -2.1 anthranilate synthase subunit II compare
BPHYT_RS25800 -3.1 -1.1 sugar ABC transporter permease compare
BPHYT_RS14895 -3.0 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS17675 -3.0 -2.0 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS01595 -3.0 -7.4 homoserine O-acetyltransferase compare
BPHYT_RS17240 -3.0 -0.7 cell division protein FtsW compare
BPHYT_RS17885 -3.0 -4.7 3-dehydroquinate synthase compare
BPHYT_RS06900 -3.0 -5.2 aspartate aminotransferase compare
BPHYT_RS15915 -3.0 -9.7 ornithine carbamoyltransferase compare
BPHYT_RS14395 -3.0 -5.0 sugar dehydratase compare
BPHYT_RS08340 -3.0 -0.7 chemotaxis protein CheY compare
BPHYT_RS03535 -3.0 -5.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS06405 -3.0 -6.3 phosphoribosylamine--glycine ligase compare
BPHYT_RS33840 -3.0 -7.4 amidophosphoribosyltransferase compare
BPHYT_RS17685 -2.9 -6.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS33875 -2.9 -5.4 tryptophan synthase subunit alpha compare
BPHYT_RS33900 -2.9 -6.9 3-isopropylmalate dehydrogenase compare
BPHYT_RS14190 -2.9 -8.3 carbamoyl phosphate synthase large subunit compare
BPHYT_RS03150 -2.8 -10.8 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS17390 -2.8 -9.3 anthranilate synthase subunit I compare
BPHYT_RS33535 -2.8 -17.9 RNA polymerase sigma factor RpoD compare
BPHYT_RS17400 -2.8 -4.6 anthranilate phosphoribosyltransferase compare
BPHYT_RS14910 -2.8 -9.3 chorismate mutase compare
BPHYT_RS03730 -2.8 -3.5 transcriptional repressor NrdR compare
BPHYT_RS17715 -2.8 -8.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS07995 -2.8 -5.2 diguanylate phosphodiesterase compare
BPHYT_RS16840 -2.8 -3.0 transketolase compare
BPHYT_RS08565 -2.7 -0.9 dihydroorotate dehydrogenase compare
BPHYT_RS18320 -2.7 -9.8 orotate phosphoribosyltransferase compare
BPHYT_RS31255 -2.7 -1.4 cytochrome B561 compare
BPHYT_RS16905 -2.7 -7.4 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS17690 -2.7 -6.7 imidazole glycerol phosphate synthase compare
BPHYT_RS04725 -2.6 -7.5 sulfite reductase compare
BPHYT_RS36275 -2.6 -1.3 hypothetical protein compare
BPHYT_RS28705 -2.6 -1.4 IclR family transcriptional regulator compare
BPHYT_RS32525 -2.6 -1.5 hypothetical protein compare
BPHYT_RS29855 -2.6 -1.1 protein-tyrosine-phosphatase compare
BPHYT_RS05515 -2.5 -3.1 hypothetical protein compare
BPHYT_RS04965 -2.5 -7.1 ATP-binding protein compare
BPHYT_RS12925 -2.5 -1.0 exodeoxyribonuclease III compare
BPHYT_RS11960 -2.5 -1.2 MarR family transcriptional regulator compare
BPHYT_RS01590 -2.5 -5.1 methionine biosynthesis protein MetW compare
BPHYT_RS08955 -2.4 -4.3 homoserine dehydrogenase compare
BPHYT_RS33635 -2.4 -10.7 AMP nucleosidase compare
BPHYT_RS16990 -2.4 -6.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
BPHYT_RS12615 -2.4 -1.4 dihydrodipicolinate synthase compare
BPHYT_RS23090 -2.4 -1.7 histidine kinase compare
BPHYT_RS36440 -2.4 -1.8 hypothetical protein compare
BPHYT_RS25815 -2.3 -1.5 deoxyribose-phosphate aldolase compare
BPHYT_RS17265 -2.3 -1.2 cell division protein compare
BPHYT_RS17700 -2.3 -2.6 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS04720 -2.3 -4.6 transcriptional regulator compare
BPHYT_RS05485 -2.2 -2.7 nitrogen regulatory protein P-II 1 compare
BPHYT_RS10040 -2.2 -1.3 hypothetical protein compare
BPHYT_RS25785 -2.2 -4.0 sugar ABC transporter permease compare
BPHYT_RS29450 -2.2 -1.8 phosphonate metabolism protein compare
BPHYT_RS14865 -2.2 -1.8 UDP-glucose 6-dehydrogenase compare
BPHYT_RS12530 -2.2 -3.7 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS03625 -2.2 -5.9 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS11530 -2.2 -2.2 5-hydroxyisourate hydrolase compare
BPHYT_RS25805 -2.1 -3.1 deoxyribose kinase (EC 2.7.1.15) (from data) compare
BPHYT_RS13320 -2.1 -0.9 allantoate amidohydrolase compare
BPHYT_RS10540 -2.1 -1.1 secretion protein compare
BPHYT_RS06375 -2.1 -4.5 ribonuclease compare
BPHYT_RS01585 -2.1 -5.2 major facilitator superfamily protein compare
BPHYT_RS17725 -2.1 -3.1 BolA family transcriptional regulator compare
BPHYT_RS25270 -2.1 -2.1 multidrug MFS transporter compare
BPHYT_RS11765 -2.0 -0.8 polyamine ABC transporter permease compare
BPHYT_RS17670 -2.0 -3.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS02610 -2.0 -2.5 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS11685 -2.0 -1.1 phasin family protein compare
BPHYT_RS13220 -2.0 -4.8 phosphomethylpyrimidine synthase compare
BPHYT_RS33540 -2.0 -3.0 hypothetical protein compare
BPHYT_RS02865 -2.0 -1.8 hypothetical protein compare
BPHYT_RS33610 -2.0 -0.6 DNA polymerase I compare
BPHYT_RS01965 -2.0 -1.4 tRNA-Ala compare
BPHYT_RS12990 -2.0 -1.7 iron transporter compare
BPHYT_RS04285 -2.0 -1.7 rhamnosyltransferase compare
BPHYT_RS27175 -2.0 -1.0 DNA-binding protein compare
BPHYT_RS23380 -2.0 -4.8 hypothetical protein compare
BPHYT_RS02825 -1.9 -4.0 ferredoxin compare
BPHYT_RS11970 -1.9 -1.1 cupin compare
BPHYT_RS08525 -1.9 -0.9 SAM-dependent methyltransferase compare
BPHYT_RS11285 -1.9 -2.2 LacI family transcription regulator compare
BPHYT_RS28535 -1.9 -0.8 response regulator receiver compare
BPHYT_RS17920 -1.9 -0.9 protein CyaY compare
BPHYT_RS17905 -1.9 -2.0 fimbrial assembly family protein compare
BPHYT_RS20900 -1.8 -2.5 phytanoyl-CoA dioxygenase compare
BPHYT_RS03640 -1.8 -3.1 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS34445 -1.8 -3.1 GntR family transcriptional regulator compare
BPHYT_RS15640 -1.8 -8.8 L-aspartate oxidase compare
BPHYT_RS23100 -1.8 -1.7 sugar ABC transporter substrate-binding protein compare
BPHYT_RS25820 -1.8 -2.0 sugar ABC transporter compare
BPHYT_RS08355 -1.8 -1.4 hypothetical protein compare
BPHYT_RS22235 -1.8 -5.9 sensor histidine kinase compare
BPHYT_RS25810 -1.8 -2.6 acetaldehyde dehydrogenase (EC 1.2.1.3) (from data) compare
BPHYT_RS12150 -1.8 -5.6 PII uridylyl-transferase compare
BPHYT_RS22240 -1.8 -6.0 hypothetical protein compare
BPHYT_RS33865 -1.7 -5.2 tryptophan synthase alpha chain compare
BPHYT_RS09515 -1.7 -2.4 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS14915 -1.7 -5.3 phosphoserine aminotransferase compare
BPHYT_RS22360 -1.7 -2.0 response regulator receiver compare
BPHYT_RS16270 -1.7 -2.1 phosphoglycerate kinase compare
BPHYT_RS16895 -1.7 -6.9 competence damage-inducible protein A compare
BPHYT_RS14105 -1.7 -9.8 exopolyphosphatase compare
BPHYT_RS08830 -1.7 -3.6 hydroxypyruvate isomerase compare
BPHYT_RS23170 -1.7 -2.1 XRE family transcriptional regulator compare
BPHYT_RS03725 -1.7 -0.7 serine hydroxymethyltransferase compare
BPHYT_RS09815 -1.7 -2.4 malate synthase compare
BPHYT_RS14380 -1.7 -4.0 elongation factor 4 compare
BPHYT_RS22455 -1.7 -1.0 phosphonate ABC transporter substrate-binding protein compare
BPHYT_RS04730 -1.6 -2.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS28350 -1.6 -1.3 fatty acid desaturase compare
BPHYT_RS31400 -1.6 -1.1 methyl-accepting chemotaxis protein compare
BPHYT_RS16975 -1.6 -3.7 shikimate 5-dehydrogenase compare
BPHYT_RS14735 -1.6 -1.1 hypothetical protein compare
BPHYT_RS22230 -1.6 -2.9 LuxR family transcriptional regulator compare
BPHYT_RS36460 -1.6 -1.4 hypothetical protein compare
BPHYT_RS21620 -1.6 -1.1 GCN5 family acetyltransferase compare
BPHYT_RS15650 -1.6 -9.1 quinolinate synthetase compare
BPHYT_RS07690 -1.6 -2.4 AraC family transcriptional regulator compare
BPHYT_RS20790 -1.6 -1.0 TetR family transcriptional regulator compare
BPHYT_RS03375 -1.6 -1.3 NAD(P) transhydrogenase compare
BPHYT_RS15645 -1.6 -5.9 nicotinate-nucleotide pyrophosphorylase compare
BPHYT_RS02065 -1.6 -3.1 membrane protein compare
BPHYT_RS20845 -1.5 -1.0 peroxidase compare
BPHYT_RS05730 -1.5 -1.4 hypothetical protein compare
BPHYT_RS31050 -1.5 -1.0 epimerase compare
BPHYT_RS12840 -1.5 -3.1 pyruvate dehydrogenase compare
BPHYT_RS03830 -1.5 -2.2 hypothetical protein compare
BPHYT_RS12510 -1.5 -1.2 RNA-binding protein compare
BPHYT_RS04920 -1.5 -2.3 aspartate 1-decarboxylase compare
BPHYT_RS25825 -1.5 -3.4 ABC transporter permease compare
BPHYT_RS04595 -1.5 -1.2 cytoplasmic protein compare
BPHYT_RS09440 -1.5 -1.3 glycerate kinase compare
BPHYT_RS15305 -1.5 -6.6 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS22245 -1.5 -5.3 transporter for D-alanine, D-lactate, and pyruvate (MctP) (from data) conserved
BPHYT_RS05585 -1.5 -1.5 hypothetical protein compare
BPHYT_RS12535 -1.5 -0.8 membrane protein compare
BPHYT_RS29190 -1.5 -3.1 sugar ABC transporter substrate-binding protein compare
BPHYT_RS06410 -1.5 -2.4 transcriptional regulator compare
BPHYT_RS09315 -1.5 -0.8 chemotaxis protein CheY compare
BPHYT_RS24760 -1.5 -1.7 cytochrome B561 compare
BPHYT_RS36130 -1.4 -0.7 hypothetical protein compare
BPHYT_RS25405 -1.4 -1.7 CoA-transferase compare
BPHYT_RS29815 -1.4 -1.6 UDP-N-acetyl-D-mannosamine transferase compare
BPHYT_RS31590 -1.4 -1.5 hypothetical protein compare
BPHYT_RS16675 -1.4 -1.3 dihydroorotase compare
BPHYT_RS35655 -1.4 -1.7 hypothetical protein compare
BPHYT_RS22265 -1.4 -0.9 hypothetical protein compare
BPHYT_RS34235 -1.4 -1.6 putative accessory domain for L-fuconate/L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) (from data) compare
BPHYT_RS09560 -1.4 -3.2 3-hydroxyacyl-CoA dehydrogenase compare
BPHYT_RS04630 -1.4 -1.3 amino acid ABC transporter permease compare
BPHYT_RS15470 -1.4 -6.2 tRNA (guanine-N(7)-)-methyltransferase compare
BPHYT_RS28480 -1.4 -1.8 hydroxyglutarate oxidase compare
BPHYT_RS03110 -1.4 -1.8 MarR family transcriptional regulator compare
BPHYT_RS36400 -1.4 -0.5 hypothetical protein compare
BPHYT_RS10850 -1.4 -1.0 LysR family transcriptional regulator compare
BPHYT_RS30415 -1.4 -1.5 AraC family transcriptional regulator compare
BPHYT_RS06915 -1.4 -1.5 hypothetical protein compare
BPHYT_RS15190 -1.3 -1.1 acyl carrier protein compare


Specific Phenotypes

For 39 genes in this experiment

For carbon source 2-Deoxyadenosine 5-monophosphate in Burkholderia phytofirmans PsJN

For carbon source 2-Deoxyadenosine 5-monophosphate across organisms