Experiment set8IT027 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Sodium nitrate nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3248 -7.1 -4.9 Probable transmembrane protein compare
Pf6N2E2_4597 -6.5 -4.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4826 -6.3 -6.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_71 -6.1 -5.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_64 -6.1 -4.2 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_77 -6.0 -4.1 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_3630 -5.9 -5.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3253 -5.9 -4.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_2258 -5.8 -6.9 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3826 -5.7 -3.9 Nitrogen regulation protein NR(I) compare
Pf6N2E2_3782 -5.5 -3.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4825 -5.5 -7.6 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3842 -5.5 -5.4 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_4047 -5.5 -3.8 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_3751 -5.4 -12.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_5175 -5.4 -12.1 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_4279 -5.4 -12.1 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_5176 -5.3 -8.1 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_3825 -5.2 -5.1 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_3610 -5.0 -6.7 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_4596 -5.0 -11.1 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4564 -4.9 -10.7 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_5006 -4.8 -9.2 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4278 -4.8 -13.5 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_5177 -4.8 -13.4 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3839 -4.8 -4.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5150 -4.8 -6.5 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2073 -4.8 -7.2 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_4048 -4.7 -9.0 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_5014 -4.7 -2.2 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_66 -4.6 -10.9 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3752 -4.5 -21.0 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3783 -4.5 -6.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3841 -4.5 -5.3 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3252 -4.3 -9.9 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3940 -4.2 -12.7 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3072 -4.2 -12.7 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_4759 -4.1 -17.9 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_50 -4.0 -10.2 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_2885 -4.0 -7.1 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_3932 -3.9 -5.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_4277 -3.6 -11.0 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_2899 -3.5 -7.0 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_4762 -3.5 -3.5 Biotin synthesis protein BioH compare
Pf6N2E2_2863 -3.4 -9.6 Gluconate permease compare
Pf6N2E2_2897 -3.4 -12.6 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_2217 -3.3 -6.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2465 -3.3 -7.4 Cys regulon transcriptional activator CysB compare
Pf6N2E2_5962 -3.3 -10.4 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_4049 -3.2 -10.2 Glycine cleavage system transcriptional activator compare
Pf6N2E2_5156 -3.1 -3.6 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_302 -3.0 -5.8 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_2380 -2.9 -14.5 Nitrate reductase (EC 1.7.99.4) (from data) conserved
Pf6N2E2_4631 -2.8 -10.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_2218 -2.8 -6.0 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_658 -2.8 -10.7 sensor histidine kinase compare
Pf6N2E2_5579 -2.7 -6.7 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_3170 -2.7 -6.5 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_4761 -2.7 -10.2 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_5223 -2.7 -6.9 Molybdopterin biosynthesis protein MoeB compare
Pf6N2E2_4764 -2.7 -7.2 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_3251 -2.6 -10.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_63 -2.6 -4.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_2074 -2.5 -2.2 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_2890 -2.5 -10.1 Glucose ABC transport system, inner membrane component 2 compare
Pf6N2E2_2422 -2.4 -10.3 Molybdopterin biosynthesis protein MoeA compare
Pf6N2E2_2378 -2.4 -14.1 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) conserved
Pf6N2E2_2889 -2.4 -10.1 Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-) compare
Pf6N2E2_4372 -2.4 -6.6 FIG00460773: hypothetical protein compare
Pf6N2E2_3938 -2.4 -13.1 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_2375 -2.4 -3.9 Response regulator NasT compare
Pf6N2E2_3984 -2.4 -11.8 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_5258 -2.3 -9.9 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_4763 -2.3 -11.6 Biotin synthesis protein BioC compare
Pf6N2E2_5666 -2.2 -11.3 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_2895 -2.2 -10.1 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf6N2E2_4797 -2.2 -2.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_2896 -2.1 -5.2 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf6N2E2_4638 -2.1 -3.9 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_4276 -2.1 -6.3 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_4611 -2.1 -4.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5494 -2.1 -5.3 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_5243 -2.1 -2.5 hypothetical protein compare
Pf6N2E2_5394 -2.1 -4.8 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_2376 -2.1 -9.6 nitrate transporter (from data) conserved
Pf6N2E2_2423 -2.0 -6.0 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_5392 -2.0 -4.5 Molybdenum cofactor biosynthesis protein MoaC compare
Pf6N2E2_5160 -2.0 -2.9 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_2891 -2.0 -10.9 Glucose ABC transport system, inner membrane component 1 compare
Pf6N2E2_5257 -1.9 -9.9 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_4009 -1.9 -10.7 GGDEF domain protein compare
Pf6N2E2_5676 -1.9 -4.3 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_3869 -1.9 -9.8 Branched-chain amino acid transport protein AzlC compare
Pf6N2E2_2424 -1.9 -2.8 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf6N2E2_3282 -1.9 -2.4 FIG005080: Possible exported protein compare
Pf6N2E2_5190 -1.9 -11.0 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_3460 -1.8 -2.1 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5527 -1.8 -2.6 Cold shock protein CspC compare
Pf6N2E2_1718 -1.8 -4.3 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_1186 -1.8 -6.4 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_2893 -1.8 -5.3 hypothetical protein compare
Pf6N2E2_37 -1.7 -4.0 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_2473 -1.7 -1.8 Major outer membrane lipoprotein I compare
Pf6N2E2_5299 -1.7 -6.1 Benzoate transport protein compare
Pf6N2E2_2892 -1.7 -8.9 Glucose ABC transport system, periplasmic sugar-binding protein compare
Pf6N2E2_4412 -1.6 -8.3 Ammonium transporter conserved
Pf6N2E2_1932 -1.5 -6.0 Transcriptional regulator, IclR family compare
Pf6N2E2_5667 -1.5 -6.0 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_4153 -1.5 -1.5 Sensory box histidine kinase compare
Pf6N2E2_4187 -1.5 -4.2 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5520 -1.4 -6.6 Sensory box histidine kinase compare
Pf6N2E2_4416 -1.4 -2.3 Tyrosine recombinase XerC compare
Pf6N2E2_2152 -1.4 -2.6 hypothetical protein compare
Pf6N2E2_2186 -1.4 -5.4 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf6N2E2_3661 -1.4 -4.7 hypothetical protein compare
Pf6N2E2_2059 -1.4 -3.6 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_417 -1.4 -3.2 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_3349 -1.4 -1.9 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_2864 -1.3 -2.2 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_4351 -1.3 -7.5 Predicted signal transduction protein compare
Pf6N2E2_3534 -1.3 -2.2 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_5342 -1.3 -2.2 21 kDa hemolysin precursor compare
Pf6N2E2_1673 -1.3 -2.5 Transcriptional regulator, TetR family compare
Pf6N2E2_2374 -1.3 -4.1 Nitrate ABC transporter, nitrate-binding protein conserved
Pf6N2E2_5986 -1.3 -2.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4071 -1.3 -2.8 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_16 -1.3 -2.0 hypothetical protein compare
Pf6N2E2_3300 -1.3 -3.2 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_2753 -1.3 -2.7 HtrA protease/chaperone protein compare
Pf6N2E2_5339 -1.2 -6.0 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5545 -1.2 -4.0 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_5746 -1.2 -2.7 Cobalamin synthase compare
Pf6N2E2_4204 -1.2 -1.1 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_4162 -1.2 -2.4 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_2010 -1.2 -1.9 hypothetical protein compare
Pf6N2E2_5739 -1.2 -1.9 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_5252 -1.2 -1.4 FIG00956396: hypothetical protein compare
Pf6N2E2_2536 -1.2 -2.1 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_613 -1.2 -1.6 lipoprotein, putative compare
Pf6N2E2_1147 -1.2 -2.8 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_2264 -1.2 -2.8 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_3340 -1.2 -8.4 Fructose repressor FruR, LacI family compare
Pf6N2E2_1056 -1.2 -0.9 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_1128 -1.2 -1.9 Two-component response regulator compare
Pf6N2E2_4025 -1.2 -2.0 hypothetical protein compare
Pf6N2E2_5338 -1.2 -6.7 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5728 -1.1 -2.7 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_1187 -1.1 -4.9 Probable nikkomycin biosynthesis protein, carboxylase compare
Pf6N2E2_1114 -1.1 -7.2 Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) conserved
Pf6N2E2_2003 -1.1 -1.9 hypothetical protein compare
Pf6N2E2_3786 -1.1 -2.7 Twin-arginine translocation protein TatC compare
Pf6N2E2_84 -1.1 -2.1 hypothetical protein compare
Pf6N2E2_2124 -1.1 -2.2 Mg(2+) transport ATPase protein C compare
Pf6N2E2_2706 -1.1 -2.0 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_420 -1.1 -1.9 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_3885 -1.0 -1.8 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_942 -1.0 -1.1 Mll6465 protein compare
Pf6N2E2_2313 -1.0 -3.0 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_3820 -1.0 -2.2 hypothetical protein compare
Pf6N2E2_5524 -1.0 -6.7 Outer membrane porin, OprD family compare
Pf6N2E2_1115 -1.0 -4.1 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Pf6N2E2_4987 -1.0 -1.3 MaoC-like domain protein compare
Pf6N2E2_2340 -1.0 -3.7 Transcriptional regulator, GntR family compare
Pf6N2E2_5158 -1.0 -3.3 FIG00954153: hypothetical protein compare
Pf6N2E2_4614 -1.0 -3.0 twitching motility protein PilH compare
Pf6N2E2_953 -1.0 -2.9 FIG00958851: hypothetical protein compare
Pf6N2E2_5316 -1.0 -1.5 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3763 -1.0 -2.1 hypothetical protein compare
Pf6N2E2_342 -1.0 -1.3 DNA-binding response regulator compare
Pf6N2E2_2274 -1.0 -4.2 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_3461 -1.0 -1.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2507 -1.0 -3.9 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_2071 -1.0 -2.2 hypothetical protein compare
Pf6N2E2_2510 -1.0 -3.7 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_4476 -0.9 -4.3 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf6N2E2_2549 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_5665 -0.9 -4.3 Succinylornithine transaminase (EC 2.6.1.81) compare
Pf6N2E2_3533 -0.9 -3.3 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf6N2E2_51 -0.9 -3.6 hypothetical protein compare
Pf6N2E2_4464 -0.9 -2.2 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf6N2E2_3849 -0.9 -2.6 FIG00954739: hypothetical protein compare
Pf6N2E2_4417 -0.9 -2.8 Protein of unknown function DUF484 compare
Pf6N2E2_2318 -0.9 -5.3 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2317 -0.9 -3.1 Putative analog of CcoH, COG3198 compare
Pf6N2E2_4145 -0.9 -2.9 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf6N2E2_1886 -0.9 -1.9 hypothetical protein compare
Pf6N2E2_5679 -0.9 -2.6 hypothetical protein compare
Pf6N2E2_1717 -0.9 -4.9 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf6N2E2_5738 -0.9 -5.0 Cobyrinic acid A,C-diamide synthase compare
Pf6N2E2_3659 -0.9 -3.6 Protein fixF compare
Pf6N2E2_423 -0.9 -1.6 Putative phosphatase YfbT compare
Pf6N2E2_2311 -0.9 -4.0 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_1392 -0.9 -3.1 sensor histidine kinase compare
Pf6N2E2_5050 -0.9 -3.2 hypothetical protein compare
Pf6N2E2_178 -0.9 -1.2 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3537 -0.9 -3.2 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_4353 -0.9 -3.2 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_1294 -0.9 -1.5 Carbon starvation protein A compare
Pf6N2E2_2381 -0.9 -3.9 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3027 -0.9 -1.1 Baseplate assembly protein V compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source Sodium nitrate in Pseudomonas fluorescens FW300-N2E2

For nitrogen source Sodium nitrate across organisms