Experiment set8IT026 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ammonium chloride nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3248 -7.1 -4.9 Probable transmembrane protein compare
Pf6N2E2_4597 -6.2 -6.1 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3783 -6.2 -4.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_64 -6.0 -4.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_4279 -6.0 -8.2 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_77 -5.9 -4.1 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_3630 -5.9 -5.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4826 -5.9 -7.0 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_4596 -5.8 -6.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_2258 -5.8 -6.9 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_4825 -5.8 -6.9 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_71 -5.5 -6.5 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3751 -5.5 -12.3 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3842 -5.5 -5.3 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_5175 -5.4 -13.0 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_3253 -5.4 -6.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5176 -5.3 -8.1 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_5006 -5.2 -7.9 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5177 -5.1 -11.9 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_50 -5.1 -9.7 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_4278 -5.1 -11.8 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_4047 -5.0 -5.9 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_2073 -4.8 -6.6 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_3782 -4.8 -4.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4564 -4.7 -10.7 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_2885 -4.7 -4.6 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_3752 -4.7 -22.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3841 -4.7 -4.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5014 -4.6 -2.2 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_5150 -4.5 -6.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3839 -4.4 -5.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3610 -4.4 -5.5 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_4048 -4.4 -9.7 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_66 -4.3 -11.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3940 -4.3 -11.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3252 -4.1 -9.0 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3932 -4.0 -4.5 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_2897 -4.0 -12.3 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_302 -3.9 -7.8 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_2890 -3.8 -11.2 Glucose ABC transport system, inner membrane component 2 compare
Pf6N2E2_3251 -3.5 -12.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_4277 -3.5 -10.4 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_4797 -3.5 -2.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_4077 -3.4 -3.8 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_4638 -3.3 -3.9 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_2899 -3.3 -6.6 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_1717 -3.2 -10.7 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf6N2E2_63 -3.2 -5.2 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_2863 -3.1 -9.5 Gluconate permease compare
Pf6N2E2_4187 -3.0 -5.4 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3264 -3.0 -3.7 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_2465 -2.9 -7.1 Cys regulon transcriptional activator CysB compare
Pf6N2E2_2892 -2.8 -12.8 Glucose ABC transport system, periplasmic sugar-binding protein compare
Pf6N2E2_5579 -2.8 -7.1 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_3170 -2.8 -7.2 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_1718 -2.8 -3.3 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_2864 -2.7 -3.3 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_5894 -2.7 -8.5 Putative threonine efflux protein compare
Pf6N2E2_4372 -2.7 -6.7 FIG00460773: hypothetical protein compare
Pf6N2E2_2891 -2.7 -13.7 Glucose ABC transport system, inner membrane component 1 compare
Pf6N2E2_2893 -2.5 -9.1 hypothetical protein compare
Pf6N2E2_3373 -2.5 -2.9 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_5899 -2.5 -7.2 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_4049 -2.5 -9.9 Glycine cleavage system transcriptional activator compare
Pf6N2E2_2896 -2.4 -4.6 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf6N2E2_4276 -2.4 -6.3 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_2074 -2.4 -1.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_5156 -2.4 -3.5 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_4759 -2.4 -13.8 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_1056 -2.3 -1.3 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_5494 -2.3 -5.1 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_4611 -2.2 -5.3 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2895 -2.2 -9.0 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf6N2E2_5520 -2.1 -7.1 Sensory box histidine kinase compare
Pf6N2E2_658 -2.1 -10.2 sensor histidine kinase compare
Pf6N2E2_2889 -2.1 -9.0 Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-) compare
Pf6N2E2_3984 -2.0 -10.8 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_5666 -1.9 -10.4 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_3938 -1.9 -12.0 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_4416 -1.8 -3.4 Tyrosine recombinase XerC compare
Pf6N2E2_4658 -1.8 -6.3 FIG00955006: hypothetical protein compare
Pf6N2E2_3885 -1.7 -3.0 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_4009 -1.7 -9.6 GGDEF domain protein compare
Pf6N2E2_6065 -1.6 -2.8 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_5155 -1.6 -3.4 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_3666 -1.6 -4.4 InaA protein compare
Pf6N2E2_5339 -1.6 -6.5 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3537 -1.5 -3.5 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_70 -1.5 -4.2 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5536 -1.5 -1.8 Holliday junction DNA helicase RuvA compare
Pf6N2E2_5728 -1.5 -2.6 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_3534 -1.5 -3.0 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_2080 -1.5 -1.5 hypothetical protein compare
Pf6N2E2_2473 -1.4 -1.6 Major outer membrane lipoprotein I compare
Pf6N2E2_5337 -1.4 -4.4 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_1606 -1.4 -6.0 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_5257 -1.4 -7.4 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_3300 -1.4 -3.6 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_37 -1.4 -3.3 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_3282 -1.4 -2.2 FIG005080: Possible exported protein compare
Pf6N2E2_5190 -1.4 -7.6 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_51 -1.4 -5.0 hypothetical protein compare
Pf6N2E2_5242 -1.4 -2.3 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_2274 -1.4 -5.5 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_4659 -1.4 -5.5 Lipoprotein, putative compare
Pf6N2E2_3060 -1.4 -3.5 Outer membrane protein H precursor compare
Pf6N2E2_5841 -1.3 -1.5 GlcG protein compare
Pf6N2E2_2313 -1.3 -3.5 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_3933 -1.3 -6.5 D-2-hydroxyglutarate dehydrogenase compare
Pf6N2E2_5676 -1.3 -3.4 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_2218 -1.3 -4.0 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5739 -1.3 -1.8 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_3535 -1.3 -4.5 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
Pf6N2E2_2217 -1.3 -4.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_5746 -1.3 -2.8 Cobalamin synthase compare
Pf6N2E2_2152 -1.3 -2.5 hypothetical protein compare
Pf6N2E2_156 -1.2 -2.6 Carbon storage regulator compare
Pf6N2E2_5553 -1.2 -5.9 Quinolinate synthetase (EC 2.5.1.72) compare
Pf6N2E2_5743 -1.2 -5.4 Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
Pf6N2E2_3346 -1.2 -4.8 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_4763 -1.2 -6.0 Biotin synthesis protein BioC compare
Pf6N2E2_5160 -1.2 -2.1 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_4464 -1.2 -2.7 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf6N2E2_2065 -1.2 -2.9 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_3351 -1.2 -4.1 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_3908 -1.2 -4.6 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5667 -1.2 -4.6 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_5745 -1.1 -5.0 Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) compare
Pf6N2E2_6140 -1.1 -0.8 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_3665 -1.1 -1.1 serine/threonine protein kinase compare
Pf6N2E2_5950 -1.1 -3.6 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_4417 -1.1 -2.6 Protein of unknown function DUF484 compare
Pf6N2E2_423 -1.1 -1.4 Putative phosphatase YfbT compare
Pf6N2E2_3349 -1.1 -1.7 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_5738 -1.1 -5.1 Cobyrinic acid A,C-diamide synthase compare
Pf6N2E2_3340 -1.1 -7.5 Fructose repressor FruR, LacI family compare
Pf6N2E2_2402 -1.1 -2.0 hypothetical protein compare
Pf6N2E2_4454 -1.1 -4.3 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_2060 -1.1 -7.3 CobN component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_1656 -1.1 -2.8 hypothetical protein compare
Pf6N2E2_4476 -1.1 -4.2 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf6N2E2_2753 -1.1 -1.7 HtrA protease/chaperone protein compare
Pf6N2E2_2527 -1.0 -2.9 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_1136 -1.0 -2.3 Transcriptional regulator, TetR family compare
Pf6N2E2_3607 -1.0 -4.4 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5258 -1.0 -4.5 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_5742 -1.0 -5.2 Cobyric acid synthase (EC 6.3.5.10) compare
Pf6N2E2_2068 -1.0 -5.1 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf6N2E2_1450 -1.0 -1.7 FIG00960438: hypothetical protein compare
Pf6N2E2_5338 -1.0 -5.2 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3532 -1.0 -4.8 Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) compare
Pf6N2E2_3460 -1.0 -1.4 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_16 -1.0 -1.7 hypothetical protein compare
Pf6N2E2_3258 -1.0 -3.3 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_1886 -1.0 -2.0 hypothetical protein compare
Pf6N2E2_5524 -1.0 -6.5 Outer membrane porin, OprD family compare
Pf6N2E2_4579 -1.0 -1.7 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_4764 -1.0 -4.5 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_4418 -1.0 -0.7 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_3826 -1.0 -2.9 Nitrogen regulation protein NR(I) compare
Pf6N2E2_2059 -1.0 -2.0 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_3261 -1.0 -2.8 hypothetical protein compare
Pf6N2E2_2646 -0.9 -1.1 FIG00953416: hypothetical protein compare
Pf6N2E2_3869 -0.9 -5.8 Branched-chain amino acid transport protein AzlC compare
Pf6N2E2_608 -0.9 -2.8 Transcriptional regulator of the arabinose operon in Shewanella, GntR family compare
Pf6N2E2_5130 -0.9 -2.1 hypothetical protein compare
Pf6N2E2_2317 -0.9 -2.8 Putative analog of CcoH, COG3198 compare
Pf6N2E2_1394 -0.9 -3.7 FIG00953323: hypothetical protein compare
Pf6N2E2_4631 -0.9 -5.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_4761 -0.9 -5.5 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_5740 -0.9 -2.6 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf6N2E2_2681 -0.9 -2.4 3-phosphoglycerate kinase compare
Pf6N2E2_5299 -0.9 -4.8 Benzoate transport protein compare
Pf6N2E2_3461 -0.9 -1.0 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_1893 -0.9 -2.1 hypothetical protein compare
Pf6N2E2_2219 -0.9 -1.6 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_58 -0.9 -2.4 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_5030 -0.9 -4.2 Transcriptional regulator, AsnC family compare
Pf6N2E2_1392 -0.9 -3.4 sensor histidine kinase compare
Pf6N2E2_1317 -0.9 -2.5 P-hydroxyphenylacetate hydroxylase C2:oxygenase component compare
Pf6N2E2_1691 -0.9 -2.2 hypothetical protein compare
Pf6N2E2_3763 -0.9 -1.9 hypothetical protein compare
Pf6N2E2_2310 -0.9 -5.6 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_4614 -0.9 -2.4 twitching motility protein PilH compare
Pf6N2E2_4352 -0.8 -2.0 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3480 -0.8 -1.5 Transcriptional regulator, ArsR family compare
Pf6N2E2_2261 -0.8 -4.1 VacJ-like lipoprotein precursor compare
Pf6N2E2_1932 -0.8 -3.2 Transcriptional regulator, IclR family compare
Pf6N2E2_3786 -0.8 -2.1 Twin-arginine translocation protein TatC compare
Pf6N2E2_4351 -0.8 -4.5 Predicted signal transduction protein compare
Pf6N2E2_1605 -0.8 -4.1 Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-) compare
Pf6N2E2_2003 -0.8 -2.1 hypothetical protein compare
Pf6N2E2_2758 -0.8 -6.2 L-aspartate oxidase (EC 1.4.3.16) compare
Pf6N2E2_3237 -0.8 -2.4 hypothetical protein compare
Pf6N2E2_2088 -0.8 -1.5 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_4762 -0.8 -2.4 Biotin synthesis protein BioH compare
Pf6N2E2_3947 -0.8 -1.7 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_3240 -0.8 -1.3 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_1182 -0.8 -2.9 Transcriptional regulator, LysR family compare
Pf6N2E2_3533 -0.8 -2.8 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source Ammonium chloride in Pseudomonas fluorescens FW300-N2E2

For nitrogen source Ammonium chloride across organisms