Experiment set8IT026 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Pimelic acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_05561 +3.0 20.5 transcriptional regulator, TetR family compare
H281DRAFT_06056 +1.6 12.9 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_00757 +1.4 2.3 hypothetical protein compare
H281DRAFT_00240 +1.3 9.8 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_01621 +1.3 2.2 transcriptional regulator, AraC family compare
H281DRAFT_05235 +1.3 9.9 hypothetical protein compare
H281DRAFT_05962 +1.3 2.1 RraA famliy compare
H281DRAFT_04970 +1.2 2.7 high-affinity iron transporter compare
H281DRAFT_02614 +1.1 2.8 L-glutamine ABC transporter membrane protein compare
H281DRAFT_03752 +1.1 4.1 transcriptional regulator, IclR family compare
H281DRAFT_03751 +1.1 2.1 transcriptional regulator, IclR family compare
H281DRAFT_02052 +1.1 1.8 hypothetical protein compare
H281DRAFT_05021 +1.1 1.2 Response regulator compare
H281DRAFT_02231 +1.0 1.1 7-carboxy-7-deazaguanine synthase, Cx14CxxC type compare
H281DRAFT_04137 +1.0 8.0 cyclopropane-fatty-acyl-phospholipid synthase compare
H281DRAFT_05963 +1.0 7.3 transcriptional regulator, IclR family compare
H281DRAFT_01927 +1.0 8.0 RNA polymerase, sigma 54 subunit, RpoN/SigL compare
H281DRAFT_05632 +0.9 1.5 hypothetical protein compare
H281DRAFT_00236 +0.9 5.1 sigma54 specific transcriptional regulator, Fis family compare
H281DRAFT_06385 +0.9 2.2 hypothetical protein compare
H281DRAFT_01093 +0.9 5.3 transcriptional regulator, winged helix family compare
H281DRAFT_04226 +0.9 1.6 hypothetical protein compare
H281DRAFT_06081 +0.9 2.0 ubiquitin-hydrolase Zn-finger-containing protein compare
H281DRAFT_02230 +0.9 3.4 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase compare
H281DRAFT_04415 +0.8 1.4 phosphate uptake regulator, PhoU compare
H281DRAFT_01512 +0.8 1.5 transcriptional regulator, IclR family compare
H281DRAFT_05122 +0.8 3.9 host factor-I protein compare
H281DRAFT_02700 +0.8 2.5 feruloyl esterase compare
H281DRAFT_02007 +0.8 6.5 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_06134 +0.8 2.6 hypothetical protein compare
H281DRAFT_03299 +0.8 2.2 cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein compare
H281DRAFT_05766 +0.8 1.4 flagellar basal-body rod protein FlgF compare
H281DRAFT_00690 +0.8 3.3 NADPH:quinone reductase compare
H281DRAFT_06320 +0.8 2.5 biopolymer transport protein ExbD compare
H281DRAFT_05512 +0.8 2.0 branched-chain amino acid transport system ATP-binding protein compare
H281DRAFT_06388 +0.7 2.0 Sugar phosphate permease compare
H281DRAFT_00996 +0.7 1.7 ChrR Cupin-like domain-containing protein compare
H281DRAFT_01190 +0.7 1.2 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase compare
H281DRAFT_06037 +0.7 1.0 molybdate transport system substrate-binding protein compare
H281DRAFT_02718 +0.7 1.7 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_04773 +0.7 2.4 Undecaprenyl-phosphate glucose phosphotransferase compare
H281DRAFT_02643 +0.7 1.4 hypothetical protein compare
H281DRAFT_00753 +0.7 1.7 Protein of unknown function (DUF1488) compare
H281DRAFT_04246 +0.7 2.1 glutathione S-transferase compare
H281DRAFT_04993 +0.7 1.9 hypothetical protein compare
H281DRAFT_02592 +0.7 2.1 fumarase, class II compare
H281DRAFT_05044 +0.7 2.5 Nucleotide-binding universal stress protein, UspA family compare
H281DRAFT_00873 +0.7 3.7 hypothetical protein compare
H281DRAFT_03154 +0.7 2.4 two-component system, NarL family, sensor kinase compare
H281DRAFT_01061 +0.7 3.3 hypothetical protein compare
H281DRAFT_05830 +0.7 1.4 hypothetical protein compare
H281DRAFT_01121 +0.7 2.0 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_04929 +0.7 2.4 hypothetical protein compare
H281DRAFT_01464 +0.7 2.3 Anti-sigma-K factor RskA compare
H281DRAFT_00244 +0.7 4.6 trehalose 6-phosphate synthase compare
H281DRAFT_00359 +0.7 1.7 Acyl-CoA dehydrogenase compare
H281DRAFT_06484 +0.7 2.0 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_05286 +0.7 1.8 transcriptional regulator, LysR family compare
H281DRAFT_04058 +0.7 1.0 Acetyltransferase, GNAT family compare
H281DRAFT_03235 +0.7 3.1 chemotaxis protein MotB compare
H281DRAFT_03058 +0.7 0.9 CheY chemotaxis protein or a CheY-like REC (receiver) domain compare
H281DRAFT_02195 +0.7 1.6 Protein of unknown function (DUF3185) compare
H281DRAFT_01319 +0.6 1.2 Uncharacterized protein, UPF0264 family compare
H281DRAFT_01353 +0.6 3.1 Predicted dithiol-disulfide oxidoreductase, DUF899 family compare
H281DRAFT_00888 +0.6 2.5 phytoene synthase compare
H281DRAFT_05265 +0.6 1.9 hypothetical protein compare
H281DRAFT_01749 +0.6 1.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_04114 +0.6 2.6 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_01188 +0.6 2.3 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_04171 +0.6 3.5 membrane fusion protein, multidrug efflux system compare
H281DRAFT_01242 +0.6 1.8 CDP-diacylglycerol pyrophosphatase compare
H281DRAFT_01610 +0.6 1.8 Choline kinase compare
H281DRAFT_03378 +0.6 1.8 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_06087 +0.6 2.3 Uncharacterized membrane protein compare
H281DRAFT_04369 +0.6 2.2 Uncharacterized conserved protein YjbJ, UPF0337 family compare
H281DRAFT_05146 +0.6 1.5 methyltransferase, TIGR00027 family compare
H281DRAFT_04482 +0.6 1.5 NAD(P)H dehydrogenase (quinone) compare
H281DRAFT_00320 +0.6 1.3 Uncharacterized conserved protein PhnB, glyoxalase superfamily compare
H281DRAFT_03979 +0.6 3.0 Predicted acyltransferase, LPLAT superfamily compare
H281DRAFT_02787 +0.6 1.7 Acetyltransferase involved in cellulose biosynthesis, CelD/BcsL family compare
H281DRAFT_00295 +0.6 4.1 transcriptional regulator, TetR family compare
H281DRAFT_05943 +0.6 1.7 Permease of the drug/metabolite transporter (DMT) superfamily compare
H281DRAFT_03684 +0.6 1.4 Protein N-acetyltransferase, RimJ/RimL family compare
H281DRAFT_00993 +0.6 3.0 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase compare
H281DRAFT_01756 +0.6 1.9 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
H281DRAFT_02903 +0.6 1.8 L-lactate dehydrogenase complex protein LldG compare
H281DRAFT_06507 +0.6 2.3 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_01322 +0.6 0.9 Predicted ATP-dependent carboligase, ATP-grasp superfamily compare
H281DRAFT_05956 +0.6 1.6 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_06190 +0.6 0.7 DNA-binding protein H-NS compare
H281DRAFT_01298 +0.6 1.8 beta-RFAP synthase compare
H281DRAFT_01052 +0.6 1.3 hypothetical protein compare
H281DRAFT_01131 +0.6 1.5 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_03572 +0.6 1.3 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_01377 +0.6 1.1 hypothetical protein compare
H281DRAFT_02940 +0.6 1.2 beta-methylmalyl-CoA/L-malyl-CoA lyase (EC 4.1.3.24) compare
H281DRAFT_01028 +0.6 0.9 peptide/nickel transport system permease protein compare
H281DRAFT_01284 +0.6 1.7 transcriptional regulator, LysR family compare
H281DRAFT_01108 +0.6 0.9 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_01181 +0.6 1.6 Acyl-CoA synthetase (NDP forming) compare
H281DRAFT_00776 +0.6 1.6 hypothetical protein compare
H281DRAFT_01270 +0.6 3.2 Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains compare
H281DRAFT_01070 +0.6 2.2 methyl-accepting chemotaxis sensory transducer with Cache sensor compare
H281DRAFT_00997 +0.6 1.7 amino acid/amide ABC transporter substrate-binding protein, HAAT family compare
H281DRAFT_02441 +0.6 1.0 putative ABC transport system ATP-binding protein compare
H281DRAFT_05071 +0.6 1.5 ammonium transporter compare
H281DRAFT_01435 +0.6 1.7 H+/gluconate symporter compare
H281DRAFT_04968 +0.6 1.8 Hemin uptake protein hemP compare
H281DRAFT_02566 +0.6 1.0 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_05246 +0.6 2.4 Predicted membrane protein compare
H281DRAFT_02741 +0.5 1.3 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_03192 +0.5 1.1 D-methionine transport system substrate-binding protein compare
H281DRAFT_03798 +0.5 1.3 NitT/TauT family transport system permease protein compare
H281DRAFT_05088 +0.5 1.3 hypothetical protein compare
H281DRAFT_02529 +0.5 2.6 shikimate dehydrogenase compare
H281DRAFT_06289 +0.5 3.1 hypothetical protein compare
H281DRAFT_04981 +0.5 1.9 Protein of unknown function (DUF3563) compare
H281DRAFT_00893 +0.5 1.1 DNA-binding transcriptional regulator, MarR family compare
H281DRAFT_04250 +0.5 1.9 DNA-binding protein Fis compare
H281DRAFT_02575 +0.5 1.4 D-threo-aldose 1-dehydrogenase compare
H281DRAFT_05314 +0.5 1.5 2-hydroxy-3-oxopropionate reductase compare
H281DRAFT_01570 +0.5 2.0 luciferase-type oxidoreductase, BA3436 family compare
H281DRAFT_01931 +0.5 1.6 UPF0042 nucleotide-binding protein compare
H281DRAFT_03266 +0.5 0.7 Nicotinamidase-related amidase compare
H281DRAFT_04746 +0.5 1.8 D-lactate dehydrogenase compare
H281DRAFT_02346 +0.5 1.2 general secretion pathway protein M compare
H281DRAFT_05885 +0.5 1.6 dihydroxyacetone kinase DhaK subunit compare
H281DRAFT_01447 +0.5 2.6 Threonine/homoserine/homoserine lactone efflux protein compare
H281DRAFT_06356 +0.5 1.8 RraA famliy compare
H281DRAFT_06176 +0.5 2.6 exonuclease SbcC compare
H281DRAFT_01184 +0.5 1.2 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_05955 +0.5 1.4 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_04896 +0.5 1.0 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_05952 +0.5 1.9 transcriptional regulator, LysR family compare
H281DRAFT_03372 +0.5 1.6 hypothetical protein compare
H281DRAFT_03946 +0.5 1.0 transcriptional regulator, ArsR family compare
H281DRAFT_01042 +0.5 1.3 glycosyltransferase, MSMEG_0565 family compare
H281DRAFT_01734 +0.5 2.4 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_00506 +0.5 0.8 Zn-dependent protease (includes SpoIVFB) compare
H281DRAFT_02755 +0.5 2.3 Uncharacterized membrane protein compare
H281DRAFT_03848 +0.5 1.8 MFS transporter, AAHS family, 4-hydroxybenzoate transporter compare
H281DRAFT_04368 +0.5 4.1 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_03838 +0.5 1.3 hypothetical protein compare
H281DRAFT_04764 +0.5 1.5 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_04170 +0.5 3.1 multidrug efflux pump compare
H281DRAFT_05808 +0.5 2.6 Tfp pilus assembly protein PilF compare
H281DRAFT_05110 +0.5 1.5 transcriptional regulator, MarR family compare
H281DRAFT_05243 +0.5 1.6 alkylhydroperoxidase AhpD family core domain-containing protein compare
H281DRAFT_03949 +0.5 2.7 Ribosomal protein S18 acetylase RimI compare
H281DRAFT_02471 +0.5 2.0 2,4-dienoyl-CoA reductase compare
H281DRAFT_05887 +0.5 0.9 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_06113 +0.5 2.0 aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A compare
H281DRAFT_04936 +0.5 2.2 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_00242 +0.5 1.4 hypothetical protein compare
H281DRAFT_04789 +0.5 2.3 hypothetical protein compare
H281DRAFT_04800 +0.5 1.0 protein SCO1/2 compare
H281DRAFT_01088 +0.5 1.1 Lactate dehydrogenase compare
H281DRAFT_06452 +0.5 2.5 putative iron-dependent peroxidase compare
H281DRAFT_01919 +0.5 2.1 Threonine/homoserine/homoserine lactone efflux protein compare
H281DRAFT_00333 +0.5 1.2 L-ascorbate metabolism protein UlaG, beta-lactamase superfamily compare
H281DRAFT_06422 +0.5 1.4 hypothetical protein compare
H281DRAFT_06346 +0.5 0.8 Predicted deacylase compare
H281DRAFT_05098 +0.5 2.2 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_03986 +0.5 1.9 Putative Ca2+/H+ antiporter, TMEM165/GDT1 family compare
H281DRAFT_03749 +0.5 0.9 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_05216 +0.5 1.2 Protein of unknown function (DUF3022) compare
H281DRAFT_03790 +0.5 0.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
H281DRAFT_02803 +0.5 1.2 thioredoxin 1 compare
H281DRAFT_00688 +0.5 3.3 Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family compare
H281DRAFT_00347 +0.5 0.9 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_06135 +0.5 1.1 hypothetical protein compare
H281DRAFT_04492 +0.5 3.3 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_05332 +0.5 1.6 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_05905 +0.5 1.2 hypothetical protein compare
H281DRAFT_03714 +0.5 2.1 transcriptional regulator, LysR family compare
H281DRAFT_03963 +0.5 2.3 molybdenum cofactor sulfurylase compare
H281DRAFT_00406 +0.5 1.1 Signal transduction histidine kinase compare
H281DRAFT_00091 +0.5 1.4 urea transport system ATP-binding protein compare
H281DRAFT_04228 +0.5 3.1 homodimeric glycerol 3-phosphate dehydrogenase (quinone) compare
H281DRAFT_01347 +0.5 1.9 transcriptional regulator, TetR family compare
H281DRAFT_01807 +0.5 1.6 transcriptional regulator, IclR family compare
H281DRAFT_01681 +0.5 1.0 Acyl dehydratase compare
H281DRAFT_05724 +0.5 2.3 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) (from data) compare
H281DRAFT_00710 +0.5 0.8 tRNA_Leu_CAG compare
H281DRAFT_05438 +0.5 0.7 transcriptional regulator, IclR family compare
H281DRAFT_00920 +0.5 1.5 transcriptional regulator, GntR family compare
H281DRAFT_00769 +0.5 1.4 hypothetical protein compare
H281DRAFT_01367 +0.5 2.0 Protein of unknown function (DUF2891) compare
H281DRAFT_01210 +0.5 1.1 Protein of unknown function (DUF1488) compare
H281DRAFT_02888 +0.5 1.1 hypothetical protein compare
H281DRAFT_00658 +0.5 1.0 transcriptional regulator, IclR family compare
H281DRAFT_04150 +0.5 2.2 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_04169 +0.5 2.6 outer membrane protein, multidrug efflux system compare
H281DRAFT_05687 +0.5 3.9 amino acid/polyamine/organocation transporter, APC superfamily compare
H281DRAFT_01880 +0.5 1.0 two component transcriptional regulator, LuxR family compare
H281DRAFT_04999 +0.5 1.3 type III secretion protein HrpB7 compare
H281DRAFT_04676 +0.5 1.1 hypothetical protein compare
H281DRAFT_05210 +0.5 0.8 Sugar phosphate isomerase/epimerase compare
H281DRAFT_04263 +0.4 1.4 putative redox protein compare
H281DRAFT_03996 +0.4 1.9 chorismate mutase (EC 5.4.99.5) compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Pimelic acid in Paraburkholderia bryophila 376MFSha3.1

For carbon source Pimelic acid across organisms