Experiment set8IT025 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Glucuronamide nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4597 -6.3 -4.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3842 -6.0 -4.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3248 -6.0 -5.6 Probable transmembrane protein compare
Pf6N2E2_3253 -5.4 -5.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_4596 -5.2 -9.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4048 -5.2 -7.1 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3839 -5.0 -3.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_71 -4.6 -7.6 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_5014 -4.6 -1.4 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4987 -4.6 -1.4 MaoC-like domain protein compare
Pf6N2E2_5006 -4.3 -9.4 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4047 -4.2 -8.1 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_3841 -4.2 -5.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3984 -4.1 -11.6 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_3751 -4.1 -13.1 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3783 -4.1 -6.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_302 -4.0 -7.6 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_5160 -4.0 -1.7 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_4963 -4.0 -1.7 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_77 -3.9 -4.5 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_64 -3.9 -2.8 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_2258 -3.7 -12.2 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_5739 -3.7 -1.6 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_3782 -3.7 -5.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5527 -3.6 -2.5 Cold shock protein CspC compare
Pf6N2E2_3610 -3.6 -4.0 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3461 -3.5 -1.8 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2473 -3.4 -1.5 Major outer membrane lipoprotein I compare
Pf6N2E2_3932 -3.4 -5.3 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_2885 -3.3 -7.5 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_66 -3.3 -7.4 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3752 -3.3 -15.4 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4825 -3.2 -6.6 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_2586 -3.2 -2.2 Hpt domain protein compare
Pf6N2E2_5175 -3.2 -10.9 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_3630 -3.2 -4.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4416 -3.2 -3.7 Tyrosine recombinase XerC compare
Pf6N2E2_2074 -3.2 -1.3 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_5177 -3.1 -8.3 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_1396 -3.1 -2.7 ABC transporter, ATP-binding protein compare
Pf6N2E2_3941 -3.0 -3.8 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_6140 -3.0 -0.9 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_4204 -3.0 -1.8 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_4372 -3.0 -6.8 FIG00460773: hypothetical protein compare
Pf6N2E2_2501 -3.0 -1.8 hypothetical protein compare
Pf6N2E2_2588 -2.9 -3.5 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_2200 -2.9 -1.2 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_3940 -2.9 -7.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3477 -2.9 -2.1 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_5579 -2.8 -7.1 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_3349 -2.8 -4.0 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_4564 -2.8 -6.0 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_2912 -2.8 -1.7 FIG00954094: hypothetical protein compare
Pf6N2E2_3282 -2.8 -1.9 FIG005080: Possible exported protein compare
Pf6N2E2_3825 -2.6 -3.5 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_5252 -2.6 -2.0 FIG00956396: hypothetical protein compare
Pf6N2E2_2073 -2.6 -7.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_2440 -2.6 -1.3 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_178 -2.6 -1.5 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3072 -2.5 -8.7 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_50 -2.5 -6.6 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_331 -2.5 -2.6 Putative translation initiation inhibitor, yjgF family compare
Pf6N2E2_3770 -2.5 -3.5 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_4764 -2.4 -4.2 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_3252 -2.3 -4.9 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5176 -2.3 -5.9 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_1966 -2.3 -3.0 SAM-dependent methyltransferases compare
Pf6N2E2_4826 -2.3 -4.5 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_4009 -2.3 -6.4 GGDEF domain protein compare
Pf6N2E2_3170 -2.3 -6.2 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_4417 -2.3 -3.0 Protein of unknown function DUF484 compare
Pf6N2E2_4638 -2.3 -3.3 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_3826 -2.3 -3.9 Nitrogen regulation protein NR(I) compare
Pf6N2E2_2870 -2.2 -3.5 Ribonuclease BN (EC 3.1.-.-) compare
Pf6N2E2_5261 -2.2 -1.1 FIG00956983: hypothetical protein compare
Pf6N2E2_3677 -2.2 -9.5 Sensory box/GGDEF family protein compare
Pf6N2E2_3607 -2.2 -5.8 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2852 -2.2 -6.5 GGDEF domain/EAL domain protein compare
Pf6N2E2_5746 -2.1 -2.5 Cobalamin synthase compare
Pf6N2E2_2465 -2.1 -4.2 Cys regulon transcriptional activator CysB compare
Pf6N2E2_1691 -2.1 -2.7 hypothetical protein compare
Pf6N2E2_3713 -2.1 -1.4 Acyl carrier protein compare
Pf6N2E2_2420 -2.1 -3.3 hypothetical protein compare
Pf6N2E2_5494 -2.1 -4.4 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_2219 -2.0 -1.8 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_4279 -1.9 -5.9 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_4759 -1.9 -8.3 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_3475 -1.9 -1.0 hypothetical protein compare
Pf6N2E2_4364 -1.9 -1.7 Protein YicC compare
Pf6N2E2_2514 -1.9 -4.2 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_5150 -1.8 -3.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3204 -1.8 -2.2 Rho-specific inhibitor of transcription termination (YaeO) compare
Pf6N2E2_1034 -1.8 -1.6 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_1660 -1.8 -3.1 RND efflux system, membrane fusion protein CmeA compare
Pf6N2E2_4763 -1.8 -5.7 Biotin synthesis protein BioC compare
Pf6N2E2_6164 -1.8 -1.0 tRNA-Val-TAC compare
Pf6N2E2_1131 -1.7 -3.3 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_4761 -1.7 -5.9 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_2513 -1.7 -4.2 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_4570 -1.7 -2.7 Cation/multidrug efflux pump compare
Pf6N2E2_5316 -1.7 -2.3 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_1625 -1.7 -1.6 Ferric reductase (1.6.99.14) compare
Pf6N2E2_1670 -1.7 -1.8 conserved membrane protein compare
Pf6N2E2_4276 -1.7 -3.4 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_4059 -1.7 -1.1 DNA-binding protein HU-alpha compare
Pf6N2E2_241 -1.7 -1.0 hypothetical protein compare
Pf6N2E2_3480 -1.7 -1.6 Transcriptional regulator, ArsR family compare
Pf6N2E2_1972 -1.6 -1.8 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_5242 -1.6 -1.6 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4352 -1.6 -2.9 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4206 -1.6 -0.8 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_4412 -1.6 -5.4 Ammonium transporter conserved
Pf6N2E2_2003 -1.6 -2.8 hypothetical protein compare
Pf6N2E2_4579 -1.5 -1.4 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_3285 -1.5 -1.9 Rod shape-determining protein MreD compare
Pf6N2E2_4630 -1.5 -4.2 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf6N2E2_3611 -1.5 -1.3 HflC protein compare
Pf6N2E2_2986 -1.5 -2.2 Transcriptional regulator, LuxR family compare
Pf6N2E2_3258 -1.5 -4.7 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_3040 -1.5 -3.7 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_3665 -1.5 -0.9 serine/threonine protein kinase compare
Pf6N2E2_1067 -1.5 -5.4 Glyceraldehyde-3-phosphate dehydrogenase, putative compare
Pf6N2E2_1283 -1.5 -1.7 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4631 -1.5 -5.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_5723 -1.5 -6.4 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_4277 -1.4 -6.6 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_63 -1.4 -3.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_3537 -1.4 -3.0 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_3737 -1.4 -1.7 General secretion pathway protein M compare
Pf6N2E2_3240 -1.4 -1.3 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_3661 -1.4 -3.3 hypothetical protein compare
Pf6N2E2_4659 -1.4 -2.4 Lipoprotein, putative compare
Pf6N2E2_3251 -1.4 -4.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_623 -1.3 -1.3 FIG00954674: hypothetical protein compare
Pf6N2E2_4278 -1.3 -5.4 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_5078 -1.3 -1.5 Carbon starvation protein A compare
Pf6N2E2_1093 -1.3 -2.3 Transcriptional regulatory protein compare
Pf6N2E2_902 -1.3 -1.4 hypothetical protein compare
Pf6N2E2_3727 -1.3 -1.4 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_893 -1.3 -2.4 hypothetical protein compare
Pf6N2E2_942 -1.3 -1.4 Mll6465 protein compare
Pf6N2E2_5666 -1.3 -5.7 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_5155 -1.3 -2.1 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_5536 -1.3 -1.4 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4517 -1.3 -2.7 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Pf6N2E2_1446 -1.3 -3.1 Enoyl-[acyl-carrier-protein] reductase [NADPH] (EC 1.3.1.10) compare
Pf6N2E2_5277 -1.3 -3.8 FIG00953110: hypothetical protein compare
Pf6N2E2_5669 -1.3 -3.7 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf6N2E2_2375 -1.3 -1.9 Response regulator NasT compare
Pf6N2E2_5733 -1.3 -2.6 NLP/P60 family protein compare
Pf6N2E2_1128 -1.2 -1.6 Two-component response regulator compare
Pf6N2E2_5111 -1.2 -0.9 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_103 -1.2 -2.0 Various polyols ABC transporter, ATP-binding component compare
Pf6N2E2_2065 -1.2 -2.3 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_2264 -1.2 -1.7 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_1673 -1.2 -1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_3039 -1.2 -3.3 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_5766 -1.2 -0.8 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_3557 -1.2 -1.7 Chaperone-modulator protein CbpM compare
Pf6N2E2_1617 -1.2 -0.7 COG2199: FOG: GGDEF domain compare
Pf6N2E2_3264 -1.2 -1.8 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_4263 -1.2 -1.6 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf6N2E2_1505 -1.2 -2.6 Transporter, MFS superfamily compare
Pf6N2E2_3744 -1.2 -2.0 General secretion pathway protein F compare
Pf6N2E2_2296 -1.1 -1.4 FIG00954767: hypothetical protein compare
Pf6N2E2_1056 -1.1 -0.7 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_2181 -1.1 -1.3 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_5024 -1.1 -1.2 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf6N2E2_2352 -1.1 -2.3 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Pf6N2E2_469 -1.1 -1.4 lipoprotein, putative compare
Pf6N2E2_3003 -1.1 -1.5 Bacteriophage protein GP46 compare
Pf6N2E2_5730 -1.1 -2.2 FIG00954480: hypothetical protein compare
Pf6N2E2_3835 -1.1 -1.6 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_5956 -1.1 -2.7 FIG004453: protein YceG like compare
Pf6N2E2_2739 -1.1 -2.3 UPF0339 protein NMA1193/NMA1859 compare
Pf6N2E2_247 -1.1 -2.4 Transcriptional regulator, AraC family compare
Pf6N2E2_4479 -1.1 -1.7 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_5955 -1.1 -2.3 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf6N2E2_1932 -1.1 -2.2 Transcriptional regulator, IclR family compare
Pf6N2E2_956 -1.1 -2.9 FIG01210404: hypothetical protein compare
Pf6N2E2_4534 -1.1 -1.6 hypothetical protein compare
Pf6N2E2_3617 -1.1 -2.0 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_1444 -1.1 -1.8 Transcriptional regulator, LysR family compare
Pf6N2E2_5510 -1.1 -1.4 FIG00955324: hypothetical protein compare
Pf6N2E2_4273 -1.1 -3.4 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_1081 -1.1 -1.2 probable membrane protein YPO3302 compare
Pf6N2E2_1499 -1.1 -2.0 ABC transporter amino acid-binding protein compare
Pf6N2E2_3351 -1.1 -1.8 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_194 -1.1 -2.4 Alcohol dehydrogenase (EC 1.1.1.1) compare
Pf6N2E2_5232 -1.1 -3.8 Cell division inhibitor compare
Pf6N2E2_660 -1.1 -1.8 hypothetical protein compare
Pf6N2E2_2176 -1.1 -1.1 Amidases related to nicotinamidase compare
Pf6N2E2_3942 -1.1 -3.5 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_4506 -1.0 -1.5 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_264 -1.0 -2.0 Transcriptional regulator, TetR family compare
Pf6N2E2_3901 -1.0 -1.9 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Pf6N2E2_4601 -1.0 -1.1 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_5468 -1.0 -2.1 Nudix hydrolase family protein PA3470 compare
Pf6N2E2_3885 -1.0 -1.4 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_1656 -1.0 -2.0 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source Glucuronamide in Pseudomonas fluorescens FW300-N2E2

For nitrogen source Glucuronamide across organisms