Experiment set8IT025 for Methanococcus maripaludis S2

Compare to:

Mc formate, casamino free, with 10mM L-Citrulline

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS01370 +1.6 9.2 acetate--CoA ligase family protein compare
MMP_RS01960 +1.1 1.4 hypothetical protein compare
MMP_RS07125 +1.1 4.2 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS03615 +0.9 7.3 4Fe-4S binding protein compare
MMP_RS06395 +0.8 3.3 ThiF family adenylyltransferase compare
MMP_RS06570 +0.8 3.4 DUF190 domain-containing protein compare
MMP_RS07815 +0.8 1.4 DUF2120 domain-containing protein compare
MMP_RS05355 +0.8 0.8 hypothetical protein compare
MMP_RS06585 +0.7 1.6 DMT family protein compare
MMP_RS06575 +0.7 3.0 fluoride efflux transporter CrcB compare
MMP_RS01100 +0.7 1.4 ABC transporter ATP-binding protein compare
MMP_RS05525 +0.7 3.8 calcium/sodium antiporter compare
MMP_RS01620 +0.7 3.3 hypothetical protein compare
MMP_RS01775 +0.7 1.5 TIGR00297 family protein compare
MMP_RS07890 +0.7 2.1 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS03215 +0.7 4.2 MBL fold metallo-hydrolase compare
MMP_RS07130 +0.7 3.5 coenzyme F420 hydrogenase subunit gamma compare
MMP_RS06525 +0.7 1.0 YciI family protein compare
MMP_RS07820 +0.7 3.8 UPF0104 family protein compare
MMP_RS01540 +0.6 2.3 DUF504 domain-containing protein compare
MMP_RS08155 +0.6 2.7 hypothetical protein compare
MMP_RS08315 +0.6 2.0 S-methyl-5-thioribose-1-phosphate isomerase compare
MMP_RS00185 +0.6 4.4 potassium channel protein compare
MMP_RS01460 +0.6 2.2 hypothetical protein compare
MMP_RS08705 +0.6 3.8 sulfopyruvate decarboxylase subunit beta compare
MMP_RS04520 +0.6 1.6 nucleoside deaminase compare
MMP_RS00450 +0.6 1.3 4Fe-4S binding protein compare
MMP_RS08775 +0.6 2.8 methanogenesis marker 9 domain-containing protein compare
MMP_RS01940 +0.6 2.1 MoxR family ATPase compare
MMP_RS04050 +0.6 2.6 hypothetical protein compare
MMP_RS07120 +0.6 3.1 coenzyme F420 hydrogenase subunit alpha compare
MMP_RS06610 +0.5 1.4 DUF2334 domain-containing protein compare
MMP_RS06900 +0.5 1.5 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS02310 +0.5 1.1 RimK-like ATPgrasp N-terminal domain-containing protein compare
MMP_RS08930 +0.5 1.0 hypothetical protein compare
MMP_RS06745 +0.5 2.8 DUF2119 domain-containing protein compare
MMP_RS03785 +0.5 2.0 cupin domain-containing protein compare
MMP_RS05970 +0.5 2.4 class II SORL domain-containing protein compare
MMP_RS07115 +0.5 3.3 MBL fold metallo-hydrolase compare
MMP_RS01895 +0.5 3.6 flippase compare
MMP_RS01910 +0.5 3.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS01880 +0.5 3.2 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS07875 +0.5 2.1 hypothetical protein compare
MMP_RS08275 +0.5 2.3 hypothetical protein compare
MMP_RS08470 +0.5 3.4 ATP-binding cassette domain-containing protein compare
MMP_RS03840 +0.5 2.2 hypothetical protein compare
MMP_RS05640 +0.5 2.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS07390 +0.5 1.0 cell division protein FtsZ compare
MMP_RS00660 +0.5 2.9 alkaline phosphatase family protein compare
MMP_RS00395 +0.5 0.9 MGMT family protein compare
MMP_RS01685 +0.5 1.6 indolepyruvate oxidoreductase subunit beta compare
MMP_RS07620 +0.5 1.3 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS02390 +0.4 2.1 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMP_RS03280 +0.4 2.4 pyridoxamine 5'-phosphate oxidase family protein compare
MMP_RS01885 +0.4 2.5 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS05820 +0.4 1.9 RNA-binding transcriptional accessory protein compare
MMP_RS00520 +0.4 0.8 RNA polymerase Rpb4 family protein compare
MMP_RS06965 +0.4 2.6 TIGR04014 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS05365 +0.4 1.2 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
MMP_RS02915 +0.4 2.2 amino acid ABC transporter permease compare
MMP_RS03385 +0.4 0.6 cation diffusion facilitator family transporter compare
MMP_RS03620 +0.4 2.1 hypothetical protein compare
MMP_RS06520 +0.4 2.1 DUF1786 domain-containing protein compare
MMP_RS02410 +0.4 1.3 ABC transporter substrate-binding protein compare
MMP_RS03010 +0.4 2.7 cupin domain-containing protein compare
MMP_RS02595 +0.4 0.7 putative zinc-binding protein compare
MMP_RS08500 +0.4 1.5 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS06535 +0.4 1.9 2-oxoacid:acceptor oxidoreductase family protein compare
MMP_RS00635 +0.4 1.9 energy-coupling factor transporter transmembrane protein EcfT compare
MMP_RS04595 +0.4 2.4 hypothetical protein compare
MMP_RS07970 +0.4 1.4 hypothetical protein compare
MMP_RS03965 +0.4 1.1 hypothetical protein compare
MMP_RS02725 +0.4 1.9 molybdate ABC transporter permease subunit compare
MMP_RS06440 +0.4 2.3 CBS domain-containing protein compare
MMP_RS03300 +0.4 0.4 TOBE domain-containing protein compare
MMP_RS00880 +0.4 1.6 ribosome assembly RNA-binding protein YhbY compare
MMP_RS00085 +0.4 2.9 DNA cytosine methyltransferase compare
MMP_RS08175 +0.4 2.3 7-cyano-7-deazaguanine synthase compare
MMP_RS00665 +0.4 2.0 hypothetical protein compare
MMP_RS05110 +0.4 2.2 16S ribosomal RNA methyltransferase A compare
MMP_RS07540 +0.4 1.0 CBS domain-containing protein compare
MMP_RS08265 +0.4 1.4 rubrerythrin compare
MMP_RS06000 +0.4 2.1 divalent-cation tolerance protein CutA compare
MMP_RS00385 +0.4 1.6 P-II family nitrogen regulator compare
MMP_RS08785 +0.4 0.5 RNA-protein complex protein Nop10 compare
MMP_RS03245 +0.4 1.9 DNA repair and recombination protein RadB compare
MMP_RS08670 +0.4 1.9 metallophosphoesterase compare
MMP_RS00960 +0.4 1.4 iron export ABC transporter permease subunit FetB compare
MMP_RS06550 +0.4 2.1 AMP-binding protein compare
MMP_RS06480 +0.4 2.4 ABC transporter substrate-binding protein compare
MMP_RS04550 +0.4 2.6 S-layer protein compare
MMP_RS02100 +0.4 1.6 metallophosphoesterase compare
MMP_RS01930 +0.4 2.6 hypothetical protein compare
MMP_RS02645 +0.4 2.5 ArsR family transcriptional regulator compare
MMP_RS00825 +0.4 1.6 fumarylacetoacetate hydrolase family protein compare
MMP_RS06435 +0.4 2.0 CBS domain-containing protein compare
MMP_RS00955 +0.4 2.5 coenzyme gamma-F420-2:alpha-L-glutamate ligase compare
MMP_RS04690 +0.3 1.5 class III signal peptide-containing protein compare
MMP_RS07895 +0.3 0.9 cytochrome c compare
MMP_RS04740 +0.3 1.5 DUF473 domain-containing protein compare
MMP_RS08090 +0.3 1.4 hypothetical protein compare
MMP_RS08890 +0.3 2.8 glycosyltransferase family 4 protein compare
MMP_RS01120 +0.3 1.2 permease compare
MMP_RS01875 +0.3 2.3 N-acetyltransferase compare
MMP_RS05975 +0.3 0.6 hypothetical protein compare
MMP_RS01095 +0.3 1.8 iron ABC transporter permease compare
MMP_RS00940 +0.3 2.1 daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein compare
MMP_RS02815 +0.3 1.0 hypothetical protein compare
MMP_RS07915 +0.3 1.5 DUF4870 domain-containing protein compare
MMP_RS08755 +0.3 2.2 sodium:solute symporter family protein compare
MMP_RS01580 +0.3 1.9 PQQ-binding-like beta-propeller repeat protein compare
MMP_RS00100 +0.3 2.1 tRNA pseudouridine(13) synthase TruD compare
MMP_RS07700 +0.3 1.8 DUF1188 domain-containing protein compare
MMP_RS01060 +0.3 1.8 calcium/sodium antiporter compare
MMP_RS02490 +0.3 1.1 hypothetical protein compare
MMP_RS01435 +0.3 1.3 DMT family transporter compare
MMP_RS05720 +0.3 1.6 signal recognition particle subunit SRP19/SEC65 family protein compare
MMP_RS00630 +0.3 1.8 ECF transporter S component compare
MMP_RS01055 +0.3 1.3 hypothetical protein compare
MMP_RS01980 +0.3 2.1 trimeric intracellular cation channel family protein compare
MMP_RS06670 +0.3 1.0 glucose-6-phosphate isomerase compare
MMP_RS04165 +0.3 1.0 TetR/AcrR family transcriptional regulator compare
MMP_RS01975 +0.3 2.4 hypothetical protein compare
MMP_RS03775 +0.3 1.0 4Fe-4S dicluster domain-containing protein compare
MMP_RS08640 +0.3 1.4 TIM barrel protein compare
MMP_RS02745 +0.3 0.9 hypothetical protein compare
MMP_RS02305 +0.3 1.5 DUF378 domain-containing protein compare
MMP_RS04270 +0.3 1.5 coenzyme F420 hydrogenase subunit alpha compare
MMP_RS08455 +0.3 1.1 multiprotein bridging factor aMBF1 compare
MMP_RS01415 +0.3 0.6 DUF2067 domain-containing protein compare
MMP_RS01130 +0.3 1.6 flavoprotein compare
MMP_RS01950 +0.3 1.9 hypothetical protein compare
MMP_RS01525 +0.3 0.6 nucleoside-diphosphate kinase compare
MMP_RS06560 +0.3 1.6 hypothetical protein compare
MMP_RS06365 +0.3 0.6 hypothetical protein compare
MMP_RS08620 +0.3 1.3 flagellar accessory protein FlaH compare
MMP_RS00480 +0.3 1.3 hypothetical protein compare
MMP_RS08440 +0.3 0.7 cell division protein SepF compare
MMP_RS03325 +0.3 1.4 hypothetical protein compare
MMP_RS01640 +0.3 1.7 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMP_RS03065 +0.3 0.9 AzlC family ABC transporter permease compare
MMP_RS02970 +0.3 1.7 hypothetical protein compare
MMP_RS08605 +0.3 1.2 flagellar protein E compare
MMP_RS07335 +0.3 1.6 tRNA (cytidine(56)-2'-O)-methyltransferase compare
MMP_RS07715 +0.3 1.4 YfcE family phosphodiesterase compare
MMP_RS08485 +0.3 1.3 tungstate ABC transporter substrate-binding protein WtpA compare
MMP_RS08160 +0.3 1.3 EamA family transporter compare
MMP_RS07435 +0.3 0.6 GMP synthase subunit A compare
MMP_RS06165 +0.3 1.3 ABC transporter permease compare
MMP_RS00910 +0.3 1.3 2-phosphosulfolactate phosphatase compare
MMP_RS05140 +0.3 1.0 helix-turn-helix transcriptional regulator compare
MMP_RS04850 +0.3 2.1 UPF0254 family protein compare
MMP_RS01430 +0.3 1.0 mechanosensitive ion channel family protein compare
MMP_RS03765 +0.3 1.1 CopG family ribbon-helix-helix protein compare
MMP_RS03440 +0.3 0.4 MoaD/ThiS family protein compare
MMP_RS07590 +0.3 1.8 hypothetical protein compare
MMP_RS00380 +0.3 1.3 P-II family nitrogen regulator compare
MMP_RS06335 +0.2 1.4 HAD family hydrolase compare
MMP_RS06600 +0.2 0.5 class III signal peptide-containing protein compare
MMP_RS00855 +0.2 1.3 DUF367 family protein compare
MMP_RS06080 +0.2 1.6 radical SAM protein compare
MMP_RS05470 +0.2 1.6 DUF523 and DUF1722 domain-containing protein compare
MMP_RS07155 +0.2 1.6 MFS transporter compare
MMP_RS05155 +0.2 1.3 hypothetical protein compare
MMP_RS01935 +0.2 1.8 DUF58 domain-containing protein compare
MMP_RS00325 +0.2 0.5 RNA-binding protein compare
MMP_RS06530 +0.2 0.9 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator compare
MMP_RS04720 +0.2 0.5 DedA family protein compare
MMP_RS07695 +0.2 1.4 DUF3236 domain-containing protein compare
MMP_RS02870 +0.2 1.3 hypothetical protein compare
MMP_RS06545 +0.2 1.2 ferredoxin family protein compare
MMP_RS08325 +0.2 1.5 hypothetical protein compare
MMP_RS02415 +0.2 0.7 site-specific integrase compare
MMP_RS03420 +0.2 0.6 acetolactate synthase small subunit compare
MMP_RS06310 +0.2 0.8 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS08945 +0.2 1.4 hypothetical protein compare
MMP_RS04475 +0.2 1.3 nitrogen fixation compare
MMP_RS01945 +0.2 1.4 DUF4350 domain-containing protein compare
MMP_RS02985 +0.2 1.0 hypothetical protein compare
MMP_RS03150 +0.2 1.5 phosphoglycerate mutase compare
MMP_RS09025 +0.2 0.3 hypothetical protein compare
MMP_RS02675 +0.2 0.7 hypothetical protein compare
MMP_RS00735 +0.2 0.9 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS02360 +0.2 1.2 hypothetical protein compare
MMP_RS00700 +0.2 1.1 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS07150 +0.2 0.9 MTH895/ArsE family thioredoxin-like protein compare
MMP_RS00795 +0.2 1.3 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS02835 +0.2 0.8 CGGC domain-containing protein compare
MMP_RS05275 +0.2 1.5 AI-2E family transporter compare
MMP_RS08260 +0.2 1.1 DUF99 family protein compare
MMP_RS04480 +0.2 1.7 lysine 2 3-aminomutase compare
MMP_RS00280 +0.2 1.3 DUF2118 domain-containing protein compare
MMP_RS06150 +0.2 1.3 hypothetical protein compare
MMP_RS02590 +0.2 1.1 low molecular weight phosphatase family protein compare
MMP_RS01335 +0.2 0.4 prefoldin subunit beta compare
MMP_RS00335 +0.2 0.9 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMP_RS07075 +0.2 0.6 phosphomannomutase/phosphoglucomutase compare
MMP_RS06290 +0.2 0.8 DNA repair and recombination protein RadA compare
MMP_RS01805 +0.2 0.8 NUDIX hydrolase compare
MMP_RS04205 +0.2 1.1 carboxymuconolactone decarboxylase family protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 L-Citrulline across organisms