Experiment set8IT025 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM

200 most important genes:

  gene name fitness t score description  
BWI76_RS04250 -9.4 -6.5 homoserine kinase compare
BWI76_RS18930 -8.3 -5.2 histidinol-phosphate transaminase compare
BWI76_RS04465 -8.0 -5.6 carbamoyl-phosphate synthase small subunit compare
BWI76_RS18920 -8.0 -4.9 ATP phosphoribosyltransferase compare
BWI76_RS05840 -7.9 -5.5 glutamate 5-kinase compare
BWI76_RS05835 -7.7 -4.7 gamma-glutamyl-phosphate reductase compare
BWI76_RS07065 -7.4 -6.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS20895 -7.3 -7.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS00785 -7.2 -7.0 cystathionine gamma-synthase compare
BWI76_RS20965 -7.1 -4.2 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS04470 -7.0 -11.7 carbamoyl phosphate synthase large subunit compare
BWI76_RS10990 -6.9 -3.4 dihydroorotase compare
BWI76_RS09645 -6.9 -2.2 thioredoxin-disulfide reductase compare
BWI76_RS01325 -6.9 -3.6 twin-arginine translocase subunit TatB compare
BWI76_RS01800 -6.8 -4.7 glucose-6-phosphate isomerase compare
BWI76_RS18935 -6.4 -7.4 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS26085 -6.4 -3.5 3-dehydroquinate synthase compare
BWI76_RS11965 -6.3 -4.0 orotidine-5'-phosphate decarboxylase compare
BWI76_RS20350 -6.3 -6.3 amidophosphoribosyltransferase compare
BWI76_RS04665 -6.2 -20.5 3-isopropylmalate dehydratase small subunit compare
BWI76_RS23220 -6.2 -7.4 amino-acid N-acetyltransferase compare
BWI76_RS21475 -6.1 -6.7 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS25225 -6.0 -6.8 ABC transporter permease compare
BWI76_RS04510 -5.9 -3.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS25645 -5.9 -9.1 shikimate dehydrogenase compare
BWI76_RS02995 -5.9 -7.8 aspartate carbamoyltransferase compare
BWI76_RS00990 -5.9 -9.1 ketol-acid reductoisomerase compare
BWI76_RS25115 -5.8 -5.9 argininosuccinate synthase compare
BWI76_RS21265 -5.8 -12.5 phosphoribosylformylglycinamidine synthase compare
BWI76_RS09755 -5.7 -9.5 phosphoserine transaminase compare
BWI76_RS00855 -5.7 -6.9 argininosuccinate lyase compare
BWI76_RS03010 -5.7 -9.5 ornithine carbamoyltransferase compare
BWI76_RS01330 -5.7 -5.1 twin-arginine translocase subunit TatC compare
BWI76_RS11845 -5.6 -1.9 tryptophan synthase subunit beta compare
BWI76_RS25230 -5.6 -8.0 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS02530 -5.6 -3.8 tRNA dimethylallyltransferase compare
BWI76_RS04685 -5.5 -11.0 putative leucine operon leader peptide compare
BWI76_RS04680 -5.5 -11.8 2-isopropylmalate synthase compare
BWI76_RS20355 -5.5 -3.2 colicin V production protein compare
BWI76_RS00965 -5.4 -1.7 acetolactate synthase 2 small subunit compare
BWI76_RS04255 -5.4 -7.4 threonine synthase compare
BWI76_RS04670 -5.4 -8.0 3-isopropylmalate dehydratase large subunit compare
BWI76_RS25220 -5.4 -4.6 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS23920 -5.4 -6.0 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS04675 -5.3 -5.5 3-isopropylmalate dehydrogenase compare
BWI76_RS01615 -5.3 -9.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS11850 -5.3 -7.6 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS04305 -5.3 -1.6 molecular chaperone DnaJ compare
BWI76_RS04245 -5.2 -13.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS00850 -5.2 -7.6 acetylglutamate kinase compare
BWI76_RS19845 -5.2 -7.6 phosphatase compare
BWI76_RS01655 -5.2 -8.4 homoserine O-succinyltransferase compare
BWI76_RS26570 -5.2 -5.1 anion permease compare
BWI76_RS23265 -5.1 -2.6 hypothetical protein compare
BWI76_RS20475 -5.1 -4.7 phospholipid-binding lipoprotein MlaA compare
BWI76_RS18950 -5.1 -3.4 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS08385 -5.1 -4.9 citrate (Si)-synthase compare
BWI76_RS04645 -5.1 -4.6 3-dehydroquinase compare
BWI76_RS26665 -5.1 -4.5 DNA-binding response regulator compare
BWI76_RS11840 -5.0 -5.3 tryptophan synthase subunit alpha compare
BWI76_RS18955 -5.0 -3.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS04160 -4.9 -7.5 phosphoserine phosphatase compare
BWI76_RS09760 -4.9 -5.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS07070 -4.9 -6.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS18940 -4.8 -5.1 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS15225 -4.8 -3.1 DeoR family transcriptional regulator compare
BWI76_RS00985 -4.7 -6.7 transcriptional regulator IlvY compare
BWI76_RS00845 -4.7 -6.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS06530 -4.6 -6.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS00400 -4.6 -2.5 glutamine synthetase compare
BWI76_RS00345 -4.6 -5.4 protein disulfide oxidoreductase DsbA compare
BWI76_RS00975 -4.6 -7.2 dihydroxy-acid dehydratase compare
BWI76_RS05260 -4.5 -2.0 chaperone compare
BWI76_RS00980 -4.5 -8.9 PLP-dependent threonine dehydratase compare
BWI76_RS13920 -4.4 -6.1 magnesium-translocating P-type ATPase compare
BWI76_RS01610 -4.4 -5.4 phosphoribosylamine--glycine ligase compare
BWI76_RS27310 -4.4 -5.1 glycosyltransferase compare
BWI76_RS23360 -4.3 -4.3 diaminopimelate decarboxylase compare
BWI76_RS01200 -4.3 -3.5 diaminopimelate epimerase compare
BWI76_RS24285 -4.3 -5.8 cystathionine beta-lyase compare
BWI76_RS23885 -4.3 -1.8 2-octaprenylphenol hydroxylase compare
BWI76_RS00180 -4.2 -1.9 F0F1 ATP synthase subunit epsilon compare
BWI76_RS09910 -4.2 -13.7 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS00835 -4.2 -12.8 phosphoenolpyruvate carboxylase compare
BWI76_RS23365 -4.2 -7.3 LysR family transcriptional regulator compare
BWI76_RS06525 -4.2 -3.5 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS20435 -4.2 -1.8 chorismate synthase compare
BWI76_RS01185 -4.2 -2.9 adenylate cyclase compare
BWI76_RS27390 -4.1 -4.2 ribonuclease PH compare
BWI76_RS00960 -4.1 -7.1 acetolactate synthase 2 catalytic subunit compare
BWI76_RS25215 -4.1 -5.8 phospholipid-binding protein MlaC compare
BWI76_RS05015 -4.1 -2.7 transcriptional regulator compare
BWI76_RS11860 -4.0 -6.9 anthranilate synthase component I compare
BWI76_RS21465 -4.0 -4.1 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS24400 -4.0 -7.9 outer membrane channel protein TolC compare
BWI76_RS23240 -3.9 -3.7 exonuclease V subunit gamma compare
BWI76_RS18925 -3.8 -3.1 histidinol dehydrogenase compare
BWI76_RS04240 -3.7 -3.2 thr operon leader peptide compare
BWI76_RS15115 -3.7 -6.4 MFS transporter compare
BWI76_RS26670 -3.7 -6.0 two-component sensor histidine kinase compare
BWI76_RS05200 -3.7 -3.6 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS27430 -3.6 -1.6 (p)ppGpp synthetase compare
BWI76_RS09660 -3.6 -2.5 DNA translocase FtsK compare
BWI76_RS23230 -3.6 -2.5 exodeoxyribonuclease V subunit beta compare
BWI76_RS11855 -3.5 -4.3 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS21070 -3.5 -2.2 outer membrane protein assembly factor BamB compare
BWI76_RS01210 -3.5 -3.0 tyrosine recombinase XerC compare
BWI76_RS00805 -3.4 -1.7 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS07185 -3.4 -2.8 hypothetical protein compare
BWI76_RS27385 -3.3 -6.3 orotate phosphoribosyltransferase compare
BWI76_RS20650 -3.3 -3.2 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS18130 -3.2 -2.9 zinc ABC transporter substrate-binding protein compare
BWI76_RS23480 -3.2 -10.8 EAL domain-containing protein compare
BWI76_RS18135 -3.1 -4.9 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS25300 -3.1 -2.1 hybrid sensor histidine kinase/response regulator compare
BWI76_RS04715 -3.1 -1.9 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS02410 -3.0 -3.4 EF-P beta-lysylation protein EpmB compare
BWI76_RS02815 -2.9 -1.9 fructose-bisphosphatase class I compare
BWI76_RS24900 -2.9 -2.6 DeoR family transcriptional regulator compare
BWI76_RS00720 -2.9 -3.3 DNA-binding response regulator compare
BWI76_RS09635 -2.9 -2.9 amino acid ABC transporter ATP-binding protein compare
BWI76_RS04530 -2.8 -2.3 peptidylprolyl isomerase SurA compare
BWI76_RS19840 -2.8 -1.5 hypothetical protein compare
BWI76_RS26000 -2.8 -6.9 aspartate aminotransferase family protein compare
BWI76_RS24850 -2.7 -6.5 DeoR family transcriptional regulator compare
BWI76_RS25065 -2.7 -3.5 polyribonucleotide nucleotidyltransferase compare
BWI76_RS06765 -2.7 -1.7 transcriptional regulator compare
BWI76_RS04705 -2.6 -5.5 DNA-binding transcriptional regulator FruR compare
BWI76_RS12470 -2.6 -2.1 thiosulfate sulfurtransferase PspE compare
BWI76_RS21370 -2.6 -2.8 ATP-dependent RNA helicase SrmB compare
BWI76_RS05450 -2.5 -2.1 ribonuclease HI compare
BWI76_RS00970 -2.4 -3.1 branched chain amino acid aminotransferase compare
BWI76_RS08530 -2.4 -3.2 protein TolA compare
BWI76_RS14650 -2.4 -2.8 helix-turn-helix transcriptional regulator compare
BWI76_RS06780 -2.3 -5.5 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS15955 -2.3 -4.5 transcriptional regulator compare
BWI76_RS04100 -2.3 -3.2 peptide chain release factor 3 compare
BWI76_RS26620 -2.3 -1.4 Fe-S biogenesis protein NfuA compare
BWI76_RS01275 -2.2 -6.6 LysR family transcriptional regulator compare
BWI76_RS18140 -2.2 -2.8 zinc ABC transporter permease compare
BWI76_RS24275 -2.2 -3.8 biopolymer transport protein ExbD compare
BWI76_RS00875 -2.2 -6.3 DNA-binding transcriptional regulator FabR compare
BWI76_RS15850 -2.2 -1.6 DUF1317 domain-containing protein compare
BWI76_RS15110 -2.1 -8.5 putative excinuclease ABC subunit A compare
BWI76_RS21350 -2.1 -1.0 anti-RNA polymerase sigma factor SigE compare
BWI76_RS08495 -2.1 -4.2 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS20140 -2.1 -2.8 NADH-quinone oxidoreductase subunit L compare
BWI76_RS21000 -2.1 -4.2 exopolyphosphatase compare
BWI76_RS20150 -2.0 -2.1 NADH:ubiquinone oxidoreductase subunit J compare
BWI76_RS19805 -2.0 -3.4 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS06770 -2.0 -7.1 Hha toxicity attenuator compare
BWI76_RS13915 -2.0 -3.8 magnesium transport protein MgtC compare
BWI76_RS15660 -2.0 -1.2 hypothetical protein compare
BWI76_RS20440 -2.0 -1.3 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS19905 -2.0 -3.9 OmpK36 porin compare
BWI76_RS25320 -2.0 -4.9 glutamate synthase compare
BWI76_RS22645 -1.9 -5.5 RNA polymerase sigma factor RpoS compare
BWI76_RS16485 -1.9 -2.0 ribonuclease T compare
BWI76_RS06775 -1.9 -9.9 multidrug efflux RND transporter permease subunit compare
BWI76_RS17000 -1.9 -2.8 Fe-S cluster assembly scaffold SufA compare
BWI76_RS20160 -1.9 -3.7 NADH-quinone oxidoreductase subunit H compare
BWI76_RS09650 -1.9 -6.4 hypothetical protein compare
BWI76_RS00600 -1.8 -5.6 LacI family transcriptional regulator compare
BWI76_RS12950 -1.8 -2.3 acriflavin resistance protein AcrA compare
BWI76_RS01125 -1.8 -3.2 4-alpha-L-fucosyltransferase compare
BWI76_RS13595 -1.8 -3.6 transcriptional regulator compare
BWI76_RS01080 -1.8 -6.6 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS07730 -1.7 -1.5 iron-enterobactin transporter membrane protein compare
BWI76_RS20270 -1.7 -4.5 hypothetical protein compare
BWI76_RS09655 -1.7 -3.2 leucine-responsive regulatory protein compare
BWI76_RS01090 -1.7 -6.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS25285 -1.7 -1.4 HPr family phosphocarrier protein compare
BWI76_RS11515 -1.7 -1.5 peptide-methionine (R)-S-oxide reductase compare
BWI76_RS24925 -1.7 -1.5 DnaA initiator-associating protein DiaA compare
BWI76_RS17190 -1.7 -2.1 TonB system transport protein TonB compare
BWI76_RS18360 -1.7 -2.0 aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein compare
BWI76_RS26455 -1.7 -2.4 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS01135 -1.6 -4.9 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS23895 -1.6 -1.9 Xaa-Pro aminopeptidase compare
BWI76_RS19010 -1.6 -2.6 polysaccharide pyruvyl transferase yvff compare
BWI76_RS05135 -1.6 -3.2 iron-hydroxamate transporter substrate-binding subunit compare
BWI76_RS24280 -1.6 -4.6 biopolymer transporter ExbB compare
BWI76_RS08040 -1.6 -2.8 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
BWI76_RS25070 -1.6 -1.6 hypothetical protein compare
BWI76_RS12955 -1.5 -7.2 multidrug efflux RND transporter permease subunit OqxB compare
BWI76_RS16980 -1.5 -4.9 bifunctional cysteine desulfurase/selenocysteine lyase compare
BWI76_RS10400 -1.5 -2.7 hypothetical protein compare
BWI76_RS20180 -1.5 -3.2 NADH-quinone oxidoreductase subunit C/D compare
BWI76_RS16240 -1.5 -1.8 anti-adapter protein IraM compare
BWI76_RS16995 -1.5 -6.8 Fe-S cluster assembly protein SufB compare
BWI76_RS08520 -1.5 -1.5 colicin transporter TolQ compare
BWI76_RS01110 -1.5 -3.5 TDP-fucosamine acetyltransferase compare
BWI76_RS14415 -1.5 -2.0 transcriptional regulator, TetR family protein compare
BWI76_RS26200 -1.5 -7.0 starch synthase compare
BWI76_RS22240 -1.5 -6.0 transcriptional regulator compare
BWI76_RS26075 -1.5 -2.4 DNA adenine methylase compare
BWI76_RS20170 -1.4 -3.3 NADH-quinone oxidoreductase subunit F compare
BWI76_RS05130 -1.4 -3.9 iron-hydroxamate transporter ATP-binding subunit conserved
BWI76_RS07640 -1.4 -1.7 short chain dehydrogenase compare
BWI76_RS05125 -1.4 -7.5 ferrichrome porin FhuA compare


Specific Phenotypes

For 2 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms