Experiment set8IT025 for Burkholderia phytofirmans PsJN

Compare to:

D-Glucose 20 mM carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17675 -6.8 -2.1 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS04955 -6.6 -2.0 methionyl-tRNA synthetase compare
BPHYT_RS17670 -6.4 -6.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS16245 -6.3 -4.3 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS33915 -6.2 -7.8 isopropylmalate isomerase compare
BPHYT_RS33835 -5.7 -8.0 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS17400 -5.6 -7.3 anthranilate phosphoribosyltransferase compare
BPHYT_RS14190 -5.6 -13.9 carbamoyl phosphate synthase large subunit compare
BPHYT_RS17690 -5.6 -12.4 imidazole glycerol phosphate synthase compare
BPHYT_RS17405 -5.4 -1.6 indole-3-glycerol phosphate synthase compare
BPHYT_RS14845 -5.4 -3.6 cysteine synthase compare
BPHYT_RS17685 -5.3 -10.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS17855 -5.3 -18.8 glutamate synthase compare
BPHYT_RS33900 -5.3 -12.7 3-isopropylmalate dehydrogenase compare
BPHYT_RS33865 -5.2 -10.1 tryptophan synthase alpha chain compare
BPHYT_RS03150 -5.1 -12.7 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS33880 -5.1 -5.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS14895 -5.0 -3.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS06555 -5.0 -11.4 ketol-acid reductoisomerase compare
BPHYT_RS06900 -5.0 -5.9 aspartate aminotransferase compare
BPHYT_RS17715 -5.0 -9.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS16270 -4.9 -4.2 phosphoglycerate kinase compare
BPHYT_RS06545 -4.9 -11.9 acetolactate synthase compare
BPHYT_RS09500 -4.9 -5.3 glucose-6-phosphate isomerase compare
BPHYT_RS02590 -4.9 -7.9 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS15915 -4.8 -12.1 ornithine carbamoyltransferase compare
BPHYT_RS13705 -4.8 -4.3 chorismate synthase compare
BPHYT_RS18320 -4.8 -11.0 orotate phosphoribosyltransferase compare
BPHYT_RS08955 -4.7 -6.1 homoserine dehydrogenase compare
BPHYT_RS14915 -4.7 -8.8 phosphoserine aminotransferase compare
BPHYT_RS04725 -4.6 -7.9 sulfite reductase compare
BPHYT_RS17395 -4.6 -2.8 anthranilate synthase subunit II compare
BPHYT_RS04740 -4.6 -6.6 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS05010 -4.6 -5.9 RpiR family transcriptional regulator compare
BPHYT_RS17680 -4.6 -4.9 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS01595 -4.5 -8.6 homoserine O-acetyltransferase compare
BPHYT_RS17890 -4.5 -2.3 shikimate kinase compare
BPHYT_RS16255 -4.4 -3.1 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS14910 -4.4 -13.7 chorismate mutase compare
BPHYT_RS06685 -4.4 -3.6 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS15920 -4.3 -10.9 argininosuccinate synthase compare
BPHYT_RS09515 -4.3 -4.1 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS17390 -4.1 -15.4 anthranilate synthase subunit I compare
BPHYT_RS17885 -4.1 -7.2 3-dehydroquinate synthase compare
BPHYT_RS16835 -4.0 -6.2 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS16905 -3.8 -7.3 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS05225 -3.8 -7.2 phosphoenolpyruvate carboxylase compare
BPHYT_RS33645 -3.8 -7.1 homoserine kinase compare
BPHYT_RS08850 -3.8 -2.2 transcriptional regulator compare
BPHYT_RS33875 -3.7 -5.8 tryptophan synthase subunit alpha compare
BPHYT_RS04720 -3.7 -8.2 transcriptional regulator compare
BPHYT_RS16735 -3.7 -4.6 phosphogluconate dehydratase compare
BPHYT_RS12845 -3.6 -14.3 ATPase compare
BPHYT_RS06045 -3.6 -7.4 transaldolase compare
BPHYT_RS01590 -3.5 -5.4 methionine biosynthesis protein MetW compare
BPHYT_RS33840 -3.4 -7.0 amidophosphoribosyltransferase compare
BPHYT_RS03640 -3.4 -4.6 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS06405 -3.3 -5.4 phosphoribosylamine--glycine ligase compare
BPHYT_RS16840 -3.3 -3.8 transketolase compare
BPHYT_RS05040 -3.2 -6.8 sugar ABC transporter ATPase compare
BPHYT_RS17700 -3.1 -3.9 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS12530 -3.0 -4.5 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS08960 -3.0 -1.9 threonine synthase compare
BPHYT_RS03645 -2.9 -2.2 tRNA dimethylallyltransferase compare
BPHYT_RS08565 -2.9 -1.2 dihydroorotate dehydrogenase compare
BPHYT_RS05035 -2.9 -7.1 sugar ABC transporter permease compare
BPHYT_RS16675 -2.9 -1.9 dihydroorotase compare
BPHYT_RS04730 -2.8 -4.2 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS20070 -2.8 -5.5 hypothetical protein compare
BPHYT_RS04965 -2.7 -6.8 ATP-binding protein compare
BPHYT_RS10100 -2.6 -3.6 dihydroxy-acid dehydratase compare
BPHYT_RS03535 -2.6 -5.8 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS33920 -2.6 -7.1 type II citrate synthase compare
BPHYT_RS10040 -2.6 -1.8 hypothetical protein compare
BPHYT_RS05030 -2.5 -2.3 sugar ABC transporter permease compare
BPHYT_RS05025 -2.5 -5.3 sugar ABC transporter substrate-binding protein compare
BPHYT_RS04745 -2.5 -3.3 sulfate adenylyltransferase compare
BPHYT_RS14195 -2.4 -2.1 carbamoyl phosphate synthase small subunit compare
BPHYT_RS14400 -2.3 -4.5 anti-sigma factor compare
BPHYT_RS05020 -2.3 -4.8 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS17520 -2.2 -5.3 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS07480 -2.2 -1.7 FAD-dependent oxidoreductase compare
BPHYT_RS13220 -2.2 -9.6 phosphomethylpyrimidine synthase compare
BPHYT_RS05960 -2.2 -5.9 endoribonuclease L-PSP compare
BPHYT_RS14735 -2.2 -1.7 hypothetical protein compare
BPHYT_RS15670 -2.2 -4.9 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS19260 -2.1 -1.0 hypothetical protein compare
BPHYT_RS03725 -2.1 -1.0 serine hydroxymethyltransferase compare
BPHYT_RS02610 -2.0 -2.9 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS02905 -2.0 -13.2 RNA polymerase subunit sigma-54 compare
BPHYT_RS18705 -2.0 -1.6 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS23230 -1.9 -1.1 histidine kinase compare
BPHYT_RS17945 -1.9 -2.4 cytochrome C biogenesis protein compare
BPHYT_RS12150 -1.8 -11.2 PII uridylyl-transferase compare
BPHYT_RS06175 -1.8 -4.3 LPS biosynthesis compare
BPHYT_RS08665 -1.8 -1.1 hypothetical protein compare
BPHYT_RS14865 -1.7 -1.9 UDP-glucose 6-dehydrogenase compare
BPHYT_RS09145 -1.7 -7.1 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS03625 -1.7 -7.0 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS23940 -1.7 -1.7 GntR family transcriptional regulator compare
BPHYT_RS03280 -1.6 -1.6 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS00960 -1.6 -2.5 recombinase RecA compare
BPHYT_RS15650 -1.6 -8.5 quinolinate synthetase compare
BPHYT_RS13390 -1.6 -1.1 IclR family transcriptional regulator compare
BPHYT_RS34655 -1.5 -2.3 2-amino-3-ketobutyrate CoA ligase compare
BPHYT_RS02135 -1.5 -1.9 glyoxylate reductase compare
BPHYT_RS03480 -1.5 -3.7 ferritin compare
BPHYT_RS28705 -1.5 -1.5 IclR family transcriptional regulator compare
BPHYT_RS33905 -1.5 -0.7 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS04750 -1.5 -3.0 uroporphyrin-III C-methyltransferase compare
BPHYT_RS12985 -1.5 -0.8 amino acid acetyltransferase compare
BPHYT_RS18340 -1.4 -1.6 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS17380 -1.4 -7.9 ribulose-phosphate 3-epimerase compare
BPHYT_RS12465 -1.4 -2.3 inositol monophosphatase compare
BPHYT_RS15645 -1.4 -4.9 nicotinate-nucleotide pyrophosphorylase compare
BPHYT_RS29850 -1.4 -1.7 protein tyrosine kinase compare
BPHYT_RS05880 -1.3 -2.2 hypothetical protein compare
BPHYT_RS15620 -1.3 -2.0 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS20665 -1.3 -1.3 LysR family transcriptional regulator compare
BPHYT_RS12925 -1.3 -1.0 exodeoxyribonuclease III compare
BPHYT_RS14060 -1.3 -1.5 peptidase M23 compare
BPHYT_RS31260 -1.3 -1.6 histidine kinase compare
BPHYT_RS06195 -1.3 -2.2 membrane protein compare
BPHYT_RS03830 -1.3 -2.3 hypothetical protein compare
BPHYT_RS30795 -1.3 -1.5 short-chain dehydrogenase compare
BPHYT_RS02285 -1.3 -4.0 cell division protein compare
BPHYT_RS08680 -1.3 -2.1 hypothetical protein compare
BPHYT_RS08340 -1.3 -0.6 chemotaxis protein CheY compare
BPHYT_RS16250 -1.3 -1.2 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS23035 -1.2 -2.9 hypothetical protein compare
BPHYT_RS03730 -1.2 -2.6 transcriptional repressor NrdR compare
BPHYT_RS34490 -1.2 -1.2 hypothetical protein compare
BPHYT_RS17035 -1.2 -2.0 sugar kinase compare
BPHYT_RS19735 -1.2 -2.4 hypothetical protein compare
BPHYT_RS27230 -1.2 -1.6 hypothetical protein compare
BPHYT_RS06610 -1.2 -1.6 triosephosphate isomerase compare
BPHYT_RS12940 -1.2 -3.0 signal transduction histidine kinase compare
BPHYT_RS35100 -1.2 -2.0 ABC transporter substrate-binding protein compare
BPHYT_RS20470 -1.2 -2.5 hypothetical protein compare
BPHYT_RS02690 -1.2 -6.3 protoheme IX farnesyltransferase compare
BPHYT_RS10345 -1.2 -0.8 flagellar motor protein MotB compare
BPHYT_RS08950 -1.2 -3.4 aminotransferase compare
BPHYT_RS15640 -1.2 -6.9 L-aspartate oxidase compare
BPHYT_RS12840 -1.2 -2.3 pyruvate dehydrogenase compare
BPHYT_RS10995 -1.2 -1.7 GntR family transcriptional regulator compare
BPHYT_RS23650 -1.2 -1.0 hypothetical protein compare
BPHYT_RS21025 -1.1 -1.3 cation-binding protein compare
BPHYT_RS33030 -1.1 -0.9 hypothetical protein compare
BPHYT_RS36320 -1.1 -2.3 type IV secretion system family protein compare
BPHYT_RS26470 -1.1 -1.2 MFS transporter compare
BPHYT_RS02685 -1.1 -4.1 cytochrome C oxidase subunit I compare
BPHYT_RS04920 -1.1 -1.8 aspartate 1-decarboxylase compare
BPHYT_RS04820 -1.1 -3.3 LysR family transcriptional regulator compare
BPHYT_RS06410 -1.1 -1.4 transcriptional regulator compare
BPHYT_RS02650 -1.1 -1.3 membrane protein compare
BPHYT_RS17095 -1.1 -1.6 proline--tRNA ligase compare
BPHYT_RS05570 -1.1 -1.8 hypothetical protein compare
BPHYT_RS31255 -1.1 -1.3 cytochrome B561 compare
BPHYT_RS11360 -1.1 -1.5 hypothetical protein compare
BPHYT_RS29520 -1.1 -0.8 hypothetical protein compare
BPHYT_RS33870 -1.1 -3.1 DNA methylase N-4 compare
BPHYT_RS26435 -1.1 -1.0 hypothetical protein compare
BPHYT_RS11265 -1.0 -1.6 hypothetical protein compare
BPHYT_RS22530 -1.0 -1.6 N5,N10-methylene tetrahydromethanopterin reductase compare
BPHYT_RS14900 -1.0 -1.9 prephenate dehydrogenase compare
BPHYT_RS30450 -1.0 -0.8 ABC transporter permease compare
BPHYT_RS28365 -1.0 -1.3 Germin subfamily 1 member 15 compare
BPHYT_RS26415 -1.0 -2.5 glutathione S-transferase compare
BPHYT_RS07055 -1.0 -1.7 sulfotransferase compare
BPHYT_RS14920 -1.0 -1.6 hypothetical protein compare
BPHYT_RS24965 -1.0 -1.5 hypothetical protein compare
BPHYT_RS26540 -1.0 -1.2 hypothetical protein compare
BPHYT_RS24745 -1.0 -1.5 transcriptional regulator compare
BPHYT_RS07900 -1.0 -1.4 hypothetical protein compare
BPHYT_RS32830 -1.0 -2.6 AraC family transcriptional regulator compare
BPHYT_RS30430 -1.0 -1.3 transketolase compare
BPHYT_RS31050 -1.0 -1.0 epimerase compare
BPHYT_RS09725 -1.0 -3.3 exopolysaccharide biosynthesis protein compare
BPHYT_RS25005 -1.0 -1.0 FMN reductase compare
BPHYT_RS23460 -1.0 -1.0 AraC family transcriptional regulator compare
BPHYT_RS00340 -1.0 -2.2 hypothetical protein compare
BPHYT_RS09160 -1.0 -3.2 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS02665 -1.0 -7.6 MFS transporter compare
BPHYT_RS11795 -1.0 -0.9 membrane protein compare
BPHYT_RS05320 -1.0 -1.0 beta-lactamase compare
BPHYT_RS25845 -1.0 -1.0 RND transporter MFP subunit compare
BPHYT_RS02965 -1.0 -1.7 membrane protein compare
BPHYT_RS14855 -1.0 -1.0 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS08245 -1.0 -4.6 anti-sigma factor compare
BPHYT_RS10810 -1.0 -1.5 glucose-methanol-choline oxidoreductase compare
BPHYT_RS30810 -1.0 -1.4 transcriptional regulator compare
BPHYT_RS02570 -1.0 -2.7 phosphocarrier protein HPr compare
BPHYT_RS01625 -1.0 -2.2 chemotaxis protein CheY compare
BPHYT_RS03110 -1.0 -1.4 MarR family transcriptional regulator compare
BPHYT_RS04890 -1.0 -1.1 cobalamin biosynthesis protein CobD compare
BPHYT_RS36450 -1.0 -2.8 hypothetical protein compare
BPHYT_RS26225 -1.0 -1.6 hypothetical protein compare
BPHYT_RS02640 -1.0 -6.9 cytochrome C oxidase compare
BPHYT_RS35205 -1.0 -1.1 hypothetical protein compare
BPHYT_RS00145 -0.9 -1.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in carbon source experiments

For carbon source D-Glucose across organisms