Experiment set8IT024 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM

200 most important genes:

  gene name fitness t score description  
BWI76_RS00805 -9.1 -6.3 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS23365 -8.3 -4.9 LysR family transcriptional regulator compare
BWI76_RS21475 -8.0 -7.8 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS01655 -7.8 -9.2 homoserine O-succinyltransferase compare
BWI76_RS18930 -7.7 -3.6 histidinol-phosphate transaminase compare
BWI76_RS18920 -7.7 -5.3 ATP phosphoribosyltransferase compare
BWI76_RS04465 -7.7 -5.3 carbamoyl-phosphate synthase small subunit compare
BWI76_RS05840 -7.6 -5.2 glutamate 5-kinase compare
BWI76_RS04685 -7.6 -9.0 putative leucine operon leader peptide compare
BWI76_RS04470 -7.4 -8.8 carbamoyl phosphate synthase large subunit compare
BWI76_RS05835 -7.3 -5.1 gamma-glutamyl-phosphate reductase compare
BWI76_RS23220 -7.0 -8.4 amino-acid N-acetyltransferase compare
BWI76_RS01615 -7.0 -9.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS00855 -7.0 -8.3 argininosuccinate lyase compare
BWI76_RS20895 -6.9 -6.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS04670 -6.9 -9.6 3-isopropylmalate dehydratase large subunit compare
BWI76_RS09645 -6.7 -2.6 thioredoxin-disulfide reductase compare
BWI76_RS02735 -6.7 -4.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS23360 -6.7 -4.6 diaminopimelate decarboxylase compare
BWI76_RS18950 -6.5 -5.4 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS04675 -6.5 -6.5 3-isopropylmalate dehydrogenase compare
BWI76_RS24285 -6.4 -6.6 cystathionine beta-lyase compare
BWI76_RS04250 -6.3 -7.4 homoserine kinase compare
BWI76_RS20355 -6.3 -3.9 colicin V production protein compare
BWI76_RS09755 -6.3 -9.5 phosphoserine transaminase compare
BWI76_RS23920 -6.2 -4.6 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS07065 -6.2 -7.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS26085 -6.1 -4.0 3-dehydroquinate synthase compare
BWI76_RS20350 -5.9 -6.8 amidophosphoribosyltransferase compare
BWI76_RS00980 -5.9 -10.8 PLP-dependent threonine dehydratase compare
BWI76_RS18940 -5.9 -6.7 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS04665 -5.9 -17.9 3-isopropylmalate dehydratase small subunit compare
BWI76_RS04245 -5.8 -15.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS07070 -5.8 -6.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS04255 -5.8 -7.8 threonine synthase compare
BWI76_RS18955 -5.7 -5.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS01610 -5.7 -7.4 phosphoribosylamine--glycine ligase compare
BWI76_RS25115 -5.5 -5.7 argininosuccinate synthase compare
BWI76_RS11845 -5.5 -2.1 tryptophan synthase subunit beta compare
BWI76_RS04160 -5.4 -4.5 phosphoserine phosphatase compare
BWI76_RS11840 -5.4 -4.5 tryptophan synthase subunit alpha compare
BWI76_RS18925 -5.4 -7.4 histidinol dehydrogenase compare
BWI76_RS00785 -5.3 -7.3 cystathionine gamma-synthase compare
BWI76_RS21265 -5.3 -9.6 phosphoribosylformylglycinamidine synthase compare
BWI76_RS18935 -5.3 -10.0 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS00845 -5.2 -8.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS01200 -5.1 -3.5 diaminopimelate epimerase compare
BWI76_RS00850 -5.1 -7.5 acetylglutamate kinase compare
BWI76_RS11850 -5.1 -8.9 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS22690 -5.1 -3.4 adenylyl-sulfate kinase compare
BWI76_RS00990 -5.0 -8.6 ketol-acid reductoisomerase compare
BWI76_RS27385 -5.0 -7.7 orotate phosphoribosyltransferase compare
BWI76_RS22755 -5.0 -7.6 phosphoadenosine phosphosulfate reductase compare
BWI76_RS13920 -4.9 -8.2 magnesium-translocating P-type ATPase compare
BWI76_RS02995 -4.9 -8.4 aspartate carbamoyltransferase compare
BWI76_RS11860 -4.8 -8.8 anthranilate synthase component I compare
BWI76_RS09760 -4.7 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS25645 -4.7 -7.0 shikimate dehydrogenase compare
BWI76_RS15115 -4.7 -4.6 MFS transporter compare
BWI76_RS04680 -4.7 -11.6 2-isopropylmalate synthase compare
BWI76_RS04645 -4.7 -5.4 3-dehydroquinase compare
BWI76_RS22760 -4.6 -6.7 sulfite reductase subunit beta compare
BWI76_RS20965 -4.6 -3.0 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS21465 -4.5 -4.4 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS09910 -4.5 -14.8 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS11855 -4.5 -9.7 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS10990 -4.4 -4.7 dihydroorotase compare
BWI76_RS03010 -4.3 -5.1 ornithine carbamoyltransferase compare
BWI76_RS11965 -4.3 -4.4 orotidine-5'-phosphate decarboxylase compare
BWI76_RS00985 -4.3 -6.2 transcriptional regulator IlvY compare
BWI76_RS00835 -4.3 -9.9 phosphoenolpyruvate carboxylase compare
BWI76_RS00400 -4.2 -2.8 glutamine synthetase compare
BWI76_RS02530 -4.2 -4.1 tRNA dimethylallyltransferase compare
BWI76_RS00975 -4.1 -5.9 dihydroxy-acid dehydratase compare
BWI76_RS23240 -4.0 -2.8 exonuclease V subunit gamma compare
BWI76_RS20435 -4.0 -2.2 chorismate synthase compare
BWI76_RS00180 -3.9 -2.1 F0F1 ATP synthase subunit epsilon compare
BWI76_RS22765 -3.9 -9.1 sulfite reductase subunit alpha compare
BWI76_RS02410 -3.9 -2.7 EF-P beta-lysylation protein EpmB compare
BWI76_RS04510 -3.8 -3.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS26570 -3.8 -5.1 anion permease compare
BWI76_RS20650 -3.8 -2.6 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS08385 -3.7 -4.3 citrate (Si)-synthase compare
BWI76_RS25315 -3.6 -10.7 glutamate synthase large subunit compare
BWI76_RS25320 -3.6 -6.1 glutamate synthase compare
BWI76_RS06765 -3.4 -2.9 transcriptional regulator compare
BWI76_RS09660 -3.4 -2.3 DNA translocase FtsK compare
BWI76_RS27165 -3.2 -5.9 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS01350 -3.1 -1.6 NAD(P)H-flavin reductase compare
BWI76_RS01800 -3.1 -4.8 glucose-6-phosphate isomerase compare
BWI76_RS04240 -3.0 -3.6 thr operon leader peptide compare
BWI76_RS23480 -3.0 -10.9 EAL domain-containing protein compare
BWI76_RS26055 -2.9 -6.7 siroheme synthase compare
BWI76_RS00960 -2.8 -3.9 acetolactate synthase 2 catalytic subunit compare
BWI76_RS00390 -2.6 -5.1 two-component system sensor histidine kinase NtrB compare
BWI76_RS15225 -2.4 -2.6 DeoR family transcriptional regulator compare
BWI76_RS23230 -2.4 -3.6 exodeoxyribonuclease V subunit beta compare
BWI76_RS19330 -2.3 -1.5 HAD family hydrolase compare
BWI76_RS13915 -2.3 -4.8 magnesium transport protein MgtC compare
BWI76_RS23265 -2.1 -3.8 hypothetical protein compare
BWI76_RS05450 -2.1 -2.1 ribonuclease HI compare
BWI76_RS02580 -2.0 -2.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS01275 -2.0 -4.4 LysR family transcriptional regulator compare
BWI76_RS16955 -2.0 -1.7 hypothetical protein compare
BWI76_RS26000 -1.9 -4.3 aspartate aminotransferase family protein compare
BWI76_RS09655 -1.8 -4.9 leucine-responsive regulatory protein compare
BWI76_RS12145 -1.8 -2.6 hypothetical protein compare
BWI76_RS27390 -1.7 -1.9 ribonuclease PH compare
BWI76_RS21370 -1.7 -2.7 ATP-dependent RNA helicase SrmB compare
BWI76_RS25065 -1.7 -2.0 polyribonucleotide nucleotidyltransferase compare
BWI76_RS22805 -1.7 -5.7 GTP diphosphokinase compare
BWI76_RS20390 -1.7 -3.6 erythronate-4-phosphate dehydrogenase compare
BWI76_RS06530 -1.6 -3.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS04305 -1.6 -1.2 molecular chaperone DnaJ compare
BWI76_RS00385 -1.6 -5.8 nitrogen assimilation regulatory protein compare
BWI76_RS25000 -1.5 -1.6 malonate decarboxylase acyl carrier protein compare
BWI76_RS06525 -1.5 -3.3 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS21345 -1.5 -1.2 sigma-E factor regulatory protein RseB compare
BWI76_RS05200 -1.5 -2.4 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS21140 -1.5 -1.8 molecular chaperone HscA compare
BWI76_RS25600 -1.5 -1.1 tRNA-Thr compare
BWI76_RS23580 -1.4 -3.4 hypothetical protein compare
BWI76_RS24025 -1.4 -7.6 agmatinase compare
BWI76_RS13250 -1.4 -1.4 cytochrome b561 compare
BWI76_RS25070 -1.4 -1.6 hypothetical protein compare
BWI76_RS06015 -1.4 -1.8 hypothetical protein compare
BWI76_RS20640 -1.4 -2.1 cysteine synthase A compare
BWI76_RS04715 -1.4 -1.4 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS25280 -1.4 -2.0 RNase adaptor protein RapZ compare
BWI76_RS15110 -1.3 -7.0 putative excinuclease ABC subunit A compare
BWI76_RS14615 -1.3 -1.5 hypothetical protein compare
BWI76_RS09255 -1.3 -2.0 hypothetical protein compare
BWI76_RS00345 -1.3 -3.1 protein disulfide oxidoreductase DsbA compare
BWI76_RS13240 -1.3 -1.7 hypothetical protein compare
BWI76_RS18710 -1.3 -7.9 GGDEF-domain containing protein compare
BWI76_RS00355 -1.3 -1.0 DNA polymerase I compare
BWI76_RS21565 -1.2 -1.2 outer membrane protein assembly factor BamE compare
BWI76_RS09650 -1.2 -5.2 hypothetical protein compare
BWI76_RS09870 -1.2 -5.9 aromatic amino acid aminotransferase compare
BWI76_RS21460 -1.2 -1.5 translation inhibitor protein RaiA compare
BWI76_RS11130 -1.2 -2.7 PTS glucose transporter subunit IIBC compare
BWI76_RS22125 -1.2 -1.4 membrane protein compare
BWI76_RS15835 -1.2 -1.1 hypothetical protein compare
BWI76_RS20785 -1.2 -1.1 ethanolamine utilization protein EutJ compare
BWI76_RS08665 -1.1 -3.1 6-phosphogluconolactonase compare
BWI76_RS00600 -1.1 -3.2 LacI family transcriptional regulator compare
BWI76_RS13595 -1.1 -2.5 transcriptional regulator compare
BWI76_RS22085 -1.1 -2.7 L-valine transporter subunit YgaH compare
BWI76_RS19865 -1.1 -1.9 ecotin compare
BWI76_RS26775 -1.1 -2.8 endo-1,4-D-glucanase compare
BWI76_RS04705 -1.1 -3.3 DNA-binding transcriptional regulator FruR compare
BWI76_RS05015 -1.1 -2.4 transcriptional regulator compare
BWI76_RS15840 -1.1 -1.8 prophage protein compare
BWI76_RS15760 -1.1 -1.4 hypothetical protein compare
BWI76_RS24100 -1.1 -1.7 YggS family pyridoxal phosphate enzyme compare
BWI76_RS13445 -1.1 -1.3 alpha/beta hydrolase compare
BWI76_RS06770 -1.0 -4.2 Hha toxicity attenuator compare
BWI76_RS01330 -1.0 -2.4 twin-arginine translocase subunit TatC compare
BWI76_RS00970 -1.0 -1.5 branched chain amino acid aminotransferase compare
BWI76_RS15660 -1.0 -0.9 hypothetical protein compare
BWI76_RS19495 -1.0 -1.1 ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein compare
BWI76_RS22705 -1.0 -3.8 siroheme synthase compare
BWI76_RS00965 -1.0 -0.9 acetolactate synthase 2 small subunit compare
BWI76_RS25060 -1.0 -2.1 lipoprotein NlpI compare
BWI76_RS04570 -1.0 -3.3 RNA polymerase-associated protein RapA compare
BWI76_RS21480 -1.0 -1.9 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS18715 -1.0 -3.6 hypothetical protein compare
BWI76_RS19840 -1.0 -1.0 hypothetical protein compare
BWI76_RS12460 -1.0 -2.7 envelope stress response membrane protein PspC compare
BWI76_RS06910 -1.0 -1.3 transcriptional regulator compare
BWI76_RS15060 -1.0 -2.8 MarR family transcriptional regulator compare
BWI76_RS05120 -1.0 -4.9 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS04100 -1.0 -2.8 peptide chain release factor 3 compare
BWI76_RS16000 -1.0 -1.2 multidrug transporter subunit MdtI compare
BWI76_RS08705 -0.9 -2.1 putative LuxR family regulatory protein compare
BWI76_RS23485 -0.9 -4.4 hypothetical protein compare
BWI76_RS25505 -0.9 -4.1 RNase E specificity factor CsrD compare
BWI76_RS06295 -0.9 -3.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
BWI76_RS01195 -0.9 -1.5 membrane protein compare
BWI76_RS01870 -0.9 -2.9 diacylglycerol kinase compare
BWI76_RS04525 -0.9 -0.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS06185 -0.9 -3.8 shikimate kinase II compare
BWI76_RS22090 -0.9 -1.5 transcriptional regulator compare
BWI76_RS08310 -0.9 -1.7 potassium-transporting ATPase subunit C compare
BWI76_RS02985 -0.9 -3.8 reactive intermediate/imine deaminase compare
BWI76_RS20970 -0.9 -1.1 phosphoribosylglycinamide formyltransferase compare
BWI76_RS20440 -0.9 -1.0 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS17975 -0.9 -1.8 tail-specific protease compare
BWI76_RS07785 -0.9 -1.7 transcriptional regulator compare
BWI76_RS07380 -0.9 -1.9 hypothetical protein compare
BWI76_RS15725 -0.9 -1.8 hypothetical protein compare
BWI76_RS00380 -0.9 -3.5 oxygen-independent coproporphyrinogen III oxidase compare
BWI76_RS19025 -0.8 -4.7 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
BWI76_RS01210 -0.8 -1.2 tyrosine recombinase XerC compare
BWI76_RS17195 -0.8 -1.8 hypothetical protein compare
BWI76_RS26175 -0.8 -2.7 DeoR/GlpR family transcriptional regulator compare
BWI76_RS25335 -0.8 -2.3 stringent starvation protein A compare
BWI76_RS16470 -0.8 -1.1 transcriptional repressor NemR compare
BWI76_RS27365 -0.8 -1.6 hypothetical protein compare
BWI76_RS16485 -0.8 -1.4 ribonuclease T compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms