Experiment set8IT024 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS08380 +1.6 3.6 endonuclease VIII compare
BWI76_RS24945 +1.4 2.7 glutamine amidotransferase compare
BWI76_RS19585 +1.1 2.8 gentisate 1,2-dioxygenase compare
BWI76_RS26455 +1.1 3.3 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS07865 +1.1 2.6 methylthioribulose 1-phosphate dehydratase compare
BWI76_RS17720 +1.0 1.4 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS05075 +1.0 1.5 type II secretion system protein GspG compare
BWI76_RS01065 +1.0 2.9 ATP-dependent RNA helicase RhlB compare
BWI76_RS16515 +1.0 3.3 LysR family transcriptional regulator compare
BWI76_RS06465 +0.9 1.4 IclR family transcriptional regulator compare
BWI76_RS26095 +0.9 1.1 shikimate kinase compare
BWI76_RS22815 +0.9 6.6 hybrid sensor histidine kinase/response regulator compare
BWI76_RS27430 +0.9 0.9 (p)ppGpp synthetase compare
BWI76_RS19325 +0.9 2.0 mandelate racemase compare
BWI76_RS04200 +0.9 2.8 phosphoglycerate mutase GpmB compare
BWI76_RS18605 +0.9 1.5 oxidoreductase molybdopterin-binding protein compare
BWI76_RS20180 +0.8 3.5 NADH-quinone oxidoreductase subunit C/D compare
BWI76_RS11770 +0.8 1.5 hypothetical protein compare
BWI76_RS08500 +0.8 1.8 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS16965 +0.8 1.4 murein lipoprotein compare
BWI76_RS09490 +0.8 2.6 DNA-binding response regulator compare
BWI76_RS02180 +0.8 0.8 hypothetical protein compare
BWI76_RS16895 +0.8 1.5 3-(3-hydroxy-phenyl)propionate transporter MhpT compare
BWI76_RS24825 +0.8 2.7 2-hydroxy-3-oxopropionate reductase compare
BWI76_RS26460 +0.8 3.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS13025 +0.8 2.4 histidine phosphatase family protein compare
BWI76_RS07985 +0.8 1.2 fluoride ion transporter CrcB compare
BWI76_RS17770 +0.8 1.2 isomerase/hydrolase compare
BWI76_RS24625 +0.8 3.0 hypothetical protein compare
BWI76_RS18335 +0.8 4.9 DNA-binding response regulator compare
BWI76_RS21245 +0.8 3.5 nitrogen regulatory protein P-II compare
BWI76_RS19770 +0.7 2.1 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS03015 +0.7 3.2 RNase E inhibitor protein compare
BWI76_RS24275 +0.7 1.6 biopolymer transport protein ExbD compare
BWI76_RS14845 +0.7 2.3 hypothetical protein compare
BWI76_RS09195 +0.7 1.9 N-acetyltransferase compare
BWI76_RS06205 +0.7 1.6 recombination-associated protein RdgC compare
BWI76_RS08370 +0.7 2.1 membrane protein compare
BWI76_RS01380 +0.7 2.6 YigZ family protein compare
BWI76_RS22960 +0.7 1.5 YgdI/YgdR family lipoprotein compare
BWI76_RS20375 +0.7 1.7 membrane protein compare
BWI76_RS18580 +0.7 2.0 hypothetical protein compare
BWI76_RS06130 +0.7 1.8 extensin family protein compare
BWI76_RS18175 +0.7 1.6 hydrolase compare
BWI76_RS19460 +0.7 1.4 lipoprotein compare
BWI76_RS20225 +0.7 2.9 hypothetical protein compare
BWI76_RS17470 +0.7 1.4 MerR family transcriptional regulator compare
BWI76_RS21675 +0.7 1.1 hypothetical protein compare
BWI76_RS09615 +0.7 2.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
BWI76_RS09440 +0.7 2.0 hypothetical protein compare
BWI76_RS02870 +0.7 2.8 hypothetical protein compare
BWI76_RS16660 +0.6 1.7 SfnB family sulfur acquisition oxidoreductase compare
BWI76_RS05950 +0.6 1.5 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS03835 +0.6 1.5 4-hydroxyphenylacetate catabolism regulatory protein HpaA compare
BWI76_RS20880 +0.6 1.9 esterase compare
BWI76_RS21075 +0.6 1.7 membrane protein compare
BWI76_RS09895 +0.6 2.2 aliphatic sulfonates ABC transporter ATP-binding protein compare
BWI76_RS09720 +0.6 2.2 PTS ascorbate transporter subunit IIB compare
BWI76_RS17045 +0.6 1.3 hypothetical protein compare
BWI76_RS11675 +0.6 1.8 arginine N-succinyltransferase compare
BWI76_RS14915 +0.6 1.3 hypothetical protein compare
BWI76_RS07645 +0.6 1.7 short-chain dehydrogenase/reductase compare
BWI76_RS20330 +0.6 2.3 histidine/lysine/arginine/ornithine ABC transporter permease HisQ compare
BWI76_RS09520 +0.6 1.6 arginine ABC transporter ATP-binding protein ArtP compare
BWI76_RS12780 +0.6 1.2 hypothetical protein compare
BWI76_RS21235 +0.6 1.2 hypothetical protein compare
BWI76_RS05785 +0.6 2.9 CI repressor compare
BWI76_RS18830 +0.6 1.9 protein NifY compare
BWI76_RS12090 +0.6 1.5 HNH endonuclease compare
BWI76_RS06175 +0.6 1.3 DUF188 domain-containing protein compare
BWI76_RS05260 +0.6 1.2 chaperone compare
BWI76_RS15825 +0.6 1.4 hypothetical protein compare
BWI76_RS11735 +0.6 2.0 PTS N,N'-diacetylchitobiose transporter subunit IIA compare
BWI76_RS25285 +0.6 1.0 HPr family phosphocarrier protein compare
BWI76_RS27605 +0.6 1.0 hypothetical protein compare
BWI76_RS09305 +0.6 1.0 hypothetical protein compare
BWI76_RS26920 +0.6 2.7 DNA-3-methyladenine glycosylase I compare
BWI76_RS06805 +0.6 1.8 primosomal replication protein N'' compare
BWI76_RS27015 +0.6 1.5 hypothetical protein compare
BWI76_RS20145 +0.6 1.3 NADH-quinone oxidoreductase subunit K compare
BWI76_RS13050 +0.6 1.7 transcriptional regulator compare
BWI76_RS18455 +0.6 1.2 tRNA-Ser compare
BWI76_RS27905 +0.6 1.2 heat-shock protein IbpB compare
BWI76_RS09530 +0.6 1.0 hypothetical protein compare
BWI76_RS09635 +0.6 0.9 amino acid ABC transporter ATP-binding protein compare
BWI76_RS24575 +0.6 0.9 hypothetical protein compare
BWI76_RS22855 +0.6 2.1 hypothetical protein compare
BWI76_RS04560 +0.6 2.4 holo-ACP synthase CitX compare
BWI76_RS21325 +0.6 1.8 hypothetical protein compare
BWI76_RS09325 +0.6 2.1 putative bacteriophage tail completion protein compare
BWI76_RS21165 +0.6 1.3 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS26290 +0.6 2.4 glycerol-3-phosphate ABC transporter ATP-binding protein compare
BWI76_RS00415 +0.6 2.5 glucose-1-phosphatase compare
BWI76_RS08515 +0.6 1.5 acyl-CoA thioesterase YbgC compare
BWI76_RS09625 +0.6 1.2 hypothetical protein compare
BWI76_RS14670 +0.6 1.9 hypothetical protein compare
BWI76_RS10500 +0.6 1.3 flavoprotein monooxygenase compare
BWI76_RS21445 +0.6 1.3 hypothetical protein compare
BWI76_RS23205 +0.6 2.7 propanediol utilization protein PduX compare
BWI76_RS14965 +0.6 2.3 AraC family transcriptional regulator compare
BWI76_RS22130 +0.6 2.2 fructose-1-phosphate/6-phosphogluconate phosphatase compare
BWI76_RS07545 +0.6 2.4 amidase compare
BWI76_RS08395 +0.6 1.5 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS08390 +0.6 2.2 hypothetical protein compare
BWI76_RS23535 +0.5 2.2 hypothetical protein compare
BWI76_RS19365 +0.5 2.6 ribulokinase compare
BWI76_RS17955 +0.5 0.9 hypothetical protein compare
BWI76_RS04710 +0.5 1.2 hypothetical protein compare
BWI76_RS16190 +0.5 1.8 universal stress protein UspE compare
BWI76_RS14610 +0.5 1.4 putative hydrolase compare
BWI76_RS15190 +0.5 1.9 GGDEF domain-containing protein compare
BWI76_RS10770 +0.5 1.9 pyrimidine utilization protein C compare
BWI76_RS04095 +0.5 1.8 dUMP phosphatase compare
BWI76_RS22450 +0.5 1.4 selenoprotein W-related protein compare
BWI76_RS23245 +0.5 2.7 hypothetical protein compare
BWI76_RS08650 +0.5 1.7 molybdate ABC transporter permease compare
BWI76_RS08215 +0.5 1.5 glucosamine-6-phosphate deaminase compare
BWI76_RS21210 +0.5 2.7 hypothetical protein compare
BWI76_RS10950 +0.5 1.4 MFS transporter compare
BWI76_RS05010 +0.5 1.6 tRNA glutamyl-Q synthetase compare
BWI76_RS25375 +0.5 1.8 hypothetical protein compare
BWI76_RS06325 +0.5 1.0 hypothetical protein compare
BWI76_RS24920 +0.5 1.1 YraN family protein compare
BWI76_RS08645 +0.5 1.3 molybdate ABC transporter substrate-binding protein compare
BWI76_RS20190 +0.5 2.1 NADH-quinone oxidoreductase subunit A compare
BWI76_RS11755 +0.5 2.0 catalase HPII compare
BWI76_RS17750 +0.5 1.3 Na+/H+ antiporter NhaB compare
BWI76_RS07185 +0.5 1.0 hypothetical protein compare
BWI76_RS21650 +0.5 2.0 hypothetical protein compare
BWI76_RS09960 +0.5 1.2 Lon protease compare
BWI76_RS09970 +0.5 1.3 porin OmpA compare
BWI76_RS17530 +0.5 1.2 hypothetical protein compare
BWI76_RS24035 +0.5 2.3 hypothetical protein compare
BWI76_RS25035 +0.5 1.2 malonate transporter subunit MadM compare
BWI76_RS07465 +0.5 1.4 TetR family transcriptional regulator compare
BWI76_RS24750 +0.5 1.2 membrane protein compare
BWI76_RS11520 +0.5 0.9 hypothetical protein compare
BWI76_RS16030 +0.5 1.1 malonate decarboxylase acyl carrier protein compare
BWI76_RS15695 +0.5 1.4 hypothetical protein compare
BWI76_RS21350 +0.5 2.7 anti-RNA polymerase sigma factor SigE compare
BWI76_RS10735 +0.5 1.5 hypothetical protein compare
BWI76_RS00080 +0.5 1.3 N-acetylmannosamine kinase compare
BWI76_RS16705 +0.5 1.9 glucose dehydrogenase compare
BWI76_RS06290 +0.5 1.4 ACP phosphodiesterase compare
BWI76_RS00060 +0.5 1.4 N-acetylneuraminate lyase compare
BWI76_RS15865 +0.5 1.1 hypothetical protein compare
BWI76_RS04895 +0.5 1.3 hypothetical protein compare
BWI76_RS11245 +0.5 3.2 spermidine/putrescine ABC transporter permease PotC compare
BWI76_RS20085 +0.5 2.4 GNAT family N-acetyltransferase compare
BWI76_RS11230 +0.5 2.4 NAD-dependent deacylase compare
BWI76_RS06560 +0.5 1.1 7-cyano-7-deazaguanine synthase QueC compare
BWI76_RS24680 +0.5 2.1 23S rRNA (guanine(1835)-N(2))-methyltransferase compare
BWI76_RS12625 +0.5 2.5 isoflavone reductase compare
BWI76_RS06635 +0.5 1.1 methylated-DNA--protein-cysteine methyltransferase compare
BWI76_RS18390 +0.5 1.9 hypothetical protein compare
BWI76_RS04975 +0.5 2.2 PTS fructose subfamily transporter subunit IIA compare
BWI76_RS12825 +0.5 1.5 hypothetical protein compare
BWI76_RS02655 +0.5 1.2 hypothetical protein compare
BWI76_RS07475 +0.5 0.7 DNA-binding transcriptional regulator RamA compare
BWI76_RS03045 +0.5 0.7 hypothetical protein compare
BWI76_RS11810 +0.5 1.5 outer membrane protein OmpW compare
BWI76_RS27735 +0.5 1.5 hypothetical protein compare
BWI76_RS20025 +0.5 2.3 HAMP domain-containing histidine kinase compare
BWI76_RS04995 +0.5 1.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
BWI76_RS23470 +0.5 3.9 hypothetical protein compare
BWI76_RS11265 +0.5 1.3 peptidase T compare
BWI76_RS17330 +0.5 1.2 nitrate reductase subunit beta compare
BWI76_RS11490 +0.5 1.8 MltA-interacting protein MipA compare
BWI76_RS19310 +0.5 1.4 ABC transporter permease compare
BWI76_RS16495 +0.5 2.0 endopeptidase compare
BWI76_RS17800 +0.5 2.3 long-chain-fatty-acid--CoA ligase compare
BWI76_RS25510 +0.5 1.7 oxidoreductase compare
BWI76_RS11790 +0.5 1.6 acyl-CoA thioesterase compare
BWI76_RS05860 +0.5 1.6 alkanesulfonates-binding protein compare
BWI76_RS16860 +0.5 2.3 acyl-CoA dehydrogenase compare
BWI76_RS01835 +0.5 1.6 chemotaxis protein CheW compare
BWI76_RS19700 +0.5 1.0 deoxyribonuclease IV compare
BWI76_RS27610 +0.5 1.2 hydroxyacid dehydrogenase compare
BWI76_RS18350 +0.5 1.6 L-cystine ABC transporter ATP-binding protein YecC compare
BWI76_RS09275 +0.5 1.8 major capsid protein compare
BWI76_RS01840 +0.5 2.0 maltose ABC transporter, ATPase component (MalK) (from data) compare
BWI76_RS15030 +0.5 1.9 ABC transporter compare
BWI76_RS23505 +0.5 3.9 ferrous iron transporter B compare
BWI76_RS21490 +0.5 3.2 GGDEF domain-containing protein compare
BWI76_RS22850 +0.5 1.5 tRNA pseudouridine synthase TruC compare
BWI76_RS16900 +0.5 1.5 4-hydroxy-2-oxovalerate aldolase compare
BWI76_RS27875 +0.5 0.7 membrane protein compare
BWI76_RS13180 +0.5 1.9 multidrug transporter EmrA compare
BWI76_RS22325 +0.5 2.0 hydrogenase 3 membrane subunit compare
BWI76_RS27560 +0.5 1.5 hypothetical protein compare
BWI76_RS06520 +0.5 2.0 trigger factor compare
BWI76_RS20430 +0.5 1.6 penicillin-insensitive murein endopeptidase compare
BWI76_RS23745 +0.5 2.2 arsenate reductase compare
BWI76_RS09375 +0.5 2.0 phage tail protein compare
BWI76_RS05570 +0.5 0.8 hypothetical protein compare
BWI76_RS14805 +0.5 1.5 hypothetical protein compare
BWI76_RS11820 +0.5 0.8 short-chain dehydrogenase/reductase SDR compare
BWI76_RS11260 +0.5 1.2 hypothetical protein compare
BWI76_RS27820 +0.5 1.0 ilvB operon leader peptide IvbL compare
BWI76_RS20610 +0.5 1.0 LysR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms